Sed0005033 (gene) Chayote v1

Overview


Name	Sed0005033
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	LG06: 5632001 .. 5632318 (-)
RNA-Seq Expression	Sed0005033
Synteny	Sed0005033

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGAACCTTGATGGAGAGAGTAAGGTGTATGTTGTCTTGGTCAAAGCTTCCTCAAACGTTTTGGGGTGAAGCGGTGACCACGGCTTGTTATATAATCAATAGGAGTCCTTCCACCGCCATAGGTTTTAAAACACCTCAAGAACTATGGCAAGGTAGTCCCCCCGATCTATCTCAATTAAATGTTTTTGGATGTCTAGCCTATGCCCATTGCAAAGAGGGTAAGTTAGATCCAAGAGCTAAAAAGTGTATATTCTTAGGATACCCCGAAGGTGTTAAAGGCTATAAATTGTGGTGCCTAGGTCAAGATGCTTAA

mRNA sequence

ATGAATAGAACCTTGATGGAGAGAGTAAGGTGTATGTTGTCTTGGTCAAAGCTTCCTCAAACGTTTTGGGGTGAAGCGGTGACCACGGCTTGTTATATAATCAATAGGAGTCCTTCCACCGCCATAGGTTTTAAAACACCTCAAGAACTATGGCAAGGTAGTCCCCCCGATCTATCTCAATTAAATGTTTTTGGATGTCTAGCCTATGCCCATTGCAAAGAGGGTAAGTTAGATCCAAGAGCTAAAAAGTGTATATTCTTAGGATACCCCGAAGGTGTTAAAGGCTATAAATTGTGGTGCCTAGGTCAAGATGCTTAA

Coding sequence (CDS)

ATGAATAGAACCTTGATGGAGAGAGTAAGGTGTATGTTGTCTTGGTCAAAGCTTCCTCAAACGTTTTGGGGTGAAGCGGTGACCACGGCTTGTTATATAATCAATAGGAGTCCTTCCACCGCCATAGGTTTTAAAACACCTCAAGAACTATGGCAAGGTAGTCCCCCCGATCTATCTCAATTAAATGTTTTTGGATGTCTAGCCTATGCCCATTGCAAAGAGGGTAAGTTAGATCCAAGAGCTAAAAAGTGTATATTCTTAGGATACCCCGAAGGTGTTAAAGGCTATAAATTGTGGTGCCTAGGTCAAGATGCTTAA

Protein sequence

MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQLNVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCLGQDA

Homology

[Close]

BLAST of Sed0005033 vs. NCBI nr
Match: KAA0043826.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 1.9e-36
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 476 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 535

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KCIF+GYP+GVKGYKLWC+
Sbjct: 536 RVFGCTAYAHVKDGKLNKRALKCIFIGYPQGVKGYKLWCI 575

[Close]

BLAST of Sed0005033 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.3e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 416 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 475

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 476 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 515

[Close]

BLAST of Sed0005033 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.3e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 586 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 645

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 646 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 685

[Close]

BLAST of Sed0005033 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.3e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 586 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 645

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 646 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 685

[Close]

BLAST of Sed0005033 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 4.3e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 586 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 645

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 646 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 685

[Close]

BLAST of Sed0005033 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-26
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1   MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQ 60
           MNRT++E+VR ML  +KLP++FWGEAV TACY+INRSPS  + F+ P+ +W       S 
Sbjct: 588 MNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSH 647

Query: 61  LNVFGCLAYAHC---KEGKLDPRAKKCIFLGYPEGVKGYKLW 100
           L VFGC A+AH    +  KLD ++  CIF+GY +   GY+LW
Sbjct: 648 LKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLW 689

[Close]

BLAST of Sed0005033 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.3e-21
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQ 60
          MNRT++E+VR ML    LP+TF  +A  TA +IIN+ PSTAI F  P E+W  S P  S 
Sbjct: 1  MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 61 LNVFGCLAYAHCKEGKLDPRAKK 84
          L  FGC+AY HC EGKL PRAKK
Sbjct: 61 LRRFGCVAYIHCDEGKLKPRAKK 83

[Close]

BLAST of Sed0005033 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-20
Identity = 50/103 (48.54%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 1   MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAI--GFKTPQELWQGSPPDL 60
           M RT+ E+ R M+S +KL ++FWGEAV TA Y+INR PS A+    KTP E+W    P L
Sbjct: 588 MIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYL 647

Query: 61  SQLNVFGCLAYAHC--KEGKLDPRAKKCIFLGYPEGVKGYKLW 100
             L VFG   Y H   K+GK D ++ K IF+GY     G+KLW
Sbjct: 648 KHLRVFGATVYVHIKNKQGKFDDKSFKSIFVGYEP--NGFKLW 688

[Close]

BLAST of Sed0005033 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-11
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           +R ++E    +LS + +P+T+W  A + A Y+INR P+  +  ++P +   G PP+  +L
Sbjct: 608 HRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKL 667

Query: 62  NVFGCLAYAHCK---EGKLDPRAKKCIFLGY 90
            VFGC  Y   +     KL+ ++K+C F+GY
Sbjct: 668 KVFGCACYPWLRPYNRHKLEDKSKQCAFMGY 698

[Close]

BLAST of Sed0005033 vs. ExPASy TrEMBL
Match: A0A5A7TP18 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001600 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.3e-37
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 476 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 535

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KCIF+GYP+GVKGYKLWC+
Sbjct: 536 RVFGCTAYAHVKDGKLNKRALKCIFIGYPQGVKGYKLWCI 575

[Close]

BLAST of Sed0005033 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 586 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 645

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 646 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 685

[Close]

BLAST of Sed0005033 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 586 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 645

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 646 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 685

[Close]

BLAST of Sed0005033 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 416 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 475

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 476 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 515

[Close]

BLAST of Sed0005033 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.1e-36
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 2   NRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQL 61
           NRT+MER RC+L+ + LP  FWGEA  TACY+INRSPSTA+  KTPQE+W G  P L  L
Sbjct: 586 NRTIMERTRCLLTNASLPLKFWGEAAQTACYLINRSPSTALNLKTPQEVWTGKAPSLEHL 645

Query: 62  NVFGCLAYAHCKEGKLDPRAKKCIFLGYPEGVKGYKLWCL 102
            VFGC AYAH K+GKL+ RA KC+F+GYP+GVKGYKLWC+
Sbjct: 646 RVFGCTAYAHVKDGKLNKRALKCMFIGYPQGVKGYKLWCI 685

[Close]

BLAST of Sed0005033 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.7e-22
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 1  MNRTLMERVRCMLSWSKLPQTFWGEAVTTACYIINRSPSTAIGFKTPQELWQGSPPDLSQ 60
          MNRT++E+VR ML    LP+TF  +A  TA +IIN+ PSTAI F  P E+W  S P  S 
Sbjct: 1  MNRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60

Query: 61 LNVFGCLAYAHCKEGKLDPRAKK 84
          L  FGC+AY HC EGKL PRAKK
Sbjct: 61 LRRFGCVAYIHCDEGKLKPRAKK 83

The following BLAST results are available for this feature:

BLAST of Sed0005033 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043826.1	1.9e-36	68.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK13826.1	4.3e-36	67.00	putative polyprotein [Cucumis melo var. makuwa]	[more]
TYK25306.1	4.3e-36	67.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	4.3e-36	67.00	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
KAA0050719.1	4.3e-36	67.00	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0005033 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.4e-26	50.98	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92512	5.3e-21	57.83	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	3.4e-20	48.54	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.7e-11	34.07	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Sed0005033 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TP18	9.3e-37	68.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3DNU1	2.1e-36	67.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7U2U7	2.1e-36	67.00	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3CTV2	2.1e-36	67.00	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	2.1e-36	67.00	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]

BLAST of Sed0005033 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	3.7e-22	57.83	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..65 e-value: 9.0E-11 score: 43.4
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005033.1	Sed0005033.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008670	2,4-dienoyl-CoA reductase (NADPH) activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003953	NAD+ nucleosidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding