Sed0005000 (gene) Chayote v1

Overview


Name	Sed0005000
Type	gene
Organism	Sechium edule (Chayote v1)
Description	chaperonin-like RbcX protein 2, chloroplastic
Location	LG05: 12016378 .. 12018213 (-)
RNA-Seq Expression	Sed0005000
Synteny	Sed0005000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAAGCTCCTAAAATCTTGGTTCTGTGAAGCTTTTTTGTGCTCTTCGAATCAGAATGGTGGGGGCTTTGTTCGTTGCGGGTGCGGCGGTGGTGGACTTGCCGGTTACCAATATGAGTCTCACAAGTGGTGGAGATTTGGTTTTGAGAAGGAATTTTAAGGCTAACAACCACTTGGATTTGAGTAGTTCGTTCATGAATTCCGGTGCCCAGTGCCGGCCCTCCGCCGCTGGTGGTGGCTGCCGGATTCGGCGGCACCGACGGAGGAATGGCAGGCTCGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTCAAAACGGTATCAATTTCATATTATATGACTCTTCTTCAGCGCAAAATCTCTCTTTTTTTGTTTTTTTTTAATTCAACCATAATTGGGCATTCCAACTAAATATCTTTTGATTTTTAGTTTTTTTTTTAAATCATTGTTTTAAAATGCTGGTCTCTTTTTCTGCTTACTGAATGTTGAGTAGGTTCTAGGAACTTGAATTCAAAGTCGAGCAATTTAGAGAATAAATAAATTATGGATCCAACTTATGGTGGTCACTTATCTACCAATTGTTATAGGGTCATATAGATTATCTCGATGAGAAAAAATTACCTACTTGTTCATGCTTAGGCGTTTTTATATTTTACTTATCTATGACTATTTGATGTCACACAATTTTTTTTCCTCATAATATTATTTTGTTTATAAAAAAAATATAAATATAAATATTCAATGATGCCACATAGATAAAATGTAGGAACAAACTACACATGAACAAGTAGTCTGAGTTTTTCTCTTATCCGGATGAATAGTTGTTGAGGTGCGCGAGTAAGCTGACTTGTATACATAAAAGGGGAATAAGGAAAGAAAAAAAAAACAGAACTTGTTAGTATGAGCTTCCCATGTTGTTACATCTCCTCCTCTGTTTCTGTTTCTTCAGTTGAGCAAGTTCTATAGAATGTATAGTGTAAGCTAACTAGAGGCTTTCCTACTTGCAGCAAATACAGAATTATTTCACATACAAGGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATAAGTAAGTGAAGCATTTCACTTCAGTTTTTTATCAAGTGAACACACTAATTCCAGAACATATTCCATTTCCTAAACTAATCTTGAATTTCATTAATTTTTCTATACCAACAGTTTTGTTGTTAATCACAAGCCAGGGGATGGGAAGCGTTTCATCCGCACCCTAGTAAAGGTAGAGTCGAAATCGCTAGATTTTCTAGATCTATCTTCCAACGACCTAAAAAGAGGTCAACCTAAGCATAACTCAACTAATTAAGACATAATATTGTCGATCAATAAGTCTATTTGAATTAGGTGAAAGTTATGTAAATAATAAAGATATTGGATATGTATGTGTGTTTAACAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACAAGGCTTCATCTCTATAACAAATGGGTTAAGGTAAAGAACAAAACATGGTATTTTGAAGACAAATTCTTAGTTTGGATCCATATATTGTTGATTGTGATTTTGTGTTATTGTAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGACGACTAGAGCTTTTACGAGATTGGCTAACTTGGAACAACAAGATTATTTTATTTCTCATTTATTTTCCCTGTAGTTTCAACCCCAATCTCTGGCCATATCCTTGGTTCTCATTCCCATTCATATTATTTTCCAC

mRNA sequence

ATTAAAGCTCCTAAAATCTTGGTTCTGTGAAGCTTTTTTGTGCTCTTCGAATCAGAATGGTGGGGGCTTTGTTCGTTGCGGGTGCGGCGGTGGTGGACTTGCCGGTTACCAATATGAGTCTCACAAGTGGTGGAGATTTGGTTTTGAGAAGGAATTTTAAGGCTAACAACCACTTGGATTTGAGTAGTTCGTTCATGAATTCCGGTGCCCAGTGCCGGCCCTCCGCCGCTGGTGGTGGCTGCCGGATTCGGCGGCACCGACGGAGGAATGGCAGGCTCGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTCAAAACGCAAATACAGAATTATTTCACATACAAGGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATAATTTTGTTGTTAATCACAAGCCAGGGGATGGGAAGCGTTTCATCCGCACCCTAGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGACGACTAGAGCTTTTACGAGATTGGCTAACTTGGAACAACAAGATTATTTTATTTCTCATTTATTTTCCCTGTAGTTTCAACCCCAATCTCTGGCCATATCCTTGGTTCTCATTCCCATTCATATTATTTTCCAC

Coding sequence (CDS)

ATGGTGGGGGCTTTGTTCGTTGCGGGTGCGGCGGTGGTGGACTTGCCGGTTACCAATATGAGTCTCACAAGTGGTGGAGATTTGGTTTTGAGAAGGAATTTTAAGGCTAACAACCACTTGGATTTGAGTAGTTCGTTCATGAATTCCGGTGCCCAGTGCCGGCCCTCCGCCGCTGGTGGTGGCTGCCGGATTCGGCGGCACCGACGGAGGAATGGCAGGCTCGTTATTTCTAATGAATTTGCAGGGCAGTATGAGGATAGTTTTGATGATGTCAAAACGCAAATACAGAATTATTTCACATACAAGGCTGTGAAGACAGTTCTAAATCAGCTTTATGAGATGAACCCTACCCAATACAGATGGTTTTATAATTTTGTTGTTAATCACAAGCCAGGGGATGGGAAGCGTTTCATCCGCACCCTAGTAAAGGAGAAGCAGGATTTGGCTGAGAGAGTGATGGTAACAAGGCTTCATCTCTATAACAAATGGGTTAAGAAATGTGATCATGCTGAAATATACAAAGAGATATCTGATGAGAACTTGGAGTTGATGCGAGAGCGACTAATGGAGACTGTGATATGGCCTTCAGACGACTAG

Protein sequence

MVGALFVAGAAVVDLPVTNMSLTSGGDLVLRRNFKANNHLDLSSSFMNSGAQCRPSAAGGGCRIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERLMETVIWPSDD

Homology

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BLAST of Sed0005000 vs. NCBI nr
Match: XP_004142113.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypothetical protein Csa_018190 [Cucumis sativus])

HSP 1 Score: 313.9 bits (803), Expect = 9.7e-82
Identity = 166/214 (77.57%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNHL------DLSS 60
           MVGALFV GA VVD           PVTNMSL SGGDLVL+R  KA ++L      DL S
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGCRIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAV 120
           SF+N G + + S AGGG + +R++RRN RLV+ NEFAGQYEDSFDDVK QIQNYFTYKAV
Sbjct: 61  SFVNLGDEWQLS-AGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           KKCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

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BLAST of Sed0005000 vs. NCBI nr
Match: XP_008449714.1 (PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.7e-82
Identity = 167/215 (77.67%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNH------LDLSS 60
           MVGALFV GA V+D           PVTNMSL SGGDLVL+R  K  ++      +DL S
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGCR-IRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKA 120
           SF+N G + + SA  GGCR  RR++RRN RLVI NEFAGQYEDSFDDVK QIQNYFTYKA
Sbjct: 61  SFVNFGDEWQLSA--GGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKW 180
           VKTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKW
Sbjct: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180

Query: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Sed0005000 vs. NCBI nr
Match: KAA0041415.1 (RcbX domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 313.9 bits (803), Expect = 9.7e-82
Identity = 167/215 (77.67%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNH------LDLSS 60
           MVGALFV GA V+D           PVTNMSL SGGDLVL+R  K  ++      +DL S
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGC-RIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKA 120
           SF+N G + + SA  GGC R RR++RRN RLVI NEFAGQYEDSFDDVK QIQNYFTYKA
Sbjct: 61  SFVNFGDEWQLSA--GGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKW 180
           VKTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKW
Sbjct: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180

Query: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

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BLAST of Sed0005000 vs. NCBI nr
Match: XP_023512052.1 (chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 3.7e-81
Identity = 166/215 (77.21%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD-----------LPVTNMSLTSGGDLVLRRNFKANNHL------DLS 60
           MVGALFVAGA V+D            PVTNMSL S GDLVL R  KA +HL      DL 
Sbjct: 1   MVGALFVAGAPVIDSPPCPCLCLDSSPVTNMSLRSRGDLVLPRRSKAKSHLAVSRLVDLR 60

Query: 61  SSFMNSGAQCRPSAAGGGCRIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKA 120
           SSF+NSG++ + SA+GG  R RR++RRN RLV+ NEFAGQYE+SFDDVK QI NYFTYKA
Sbjct: 61  SSFVNSGSEWQLSASGGH-RRRRNQRRNRRLVVVNEFAGQYEESFDDVKMQILNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKW 180
           VKTVLNQLYEMNPTQYRWFY+FVVNHKP DGKRFIRTLVKEKQDLAERVM+TRLHLYNKW
Sbjct: 121 VKTVLNQLYEMNPTQYRWFYDFVVNHKPRDGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180

Query: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 214

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BLAST of Sed0005000 vs. NCBI nr
Match: XP_022148835.1 (chaperonin-like RbcX protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 311.6 bits (797), Expect = 4.8e-81
Identity = 162/212 (76.42%), Postives = 175/212 (82.55%), Query Frame = 0


Query: 2   VGALFVAGAAVVDL--------PVTNMSLTSGGDLVLRRNFKANNH-------LDLSSSF 61
           VGA FV GA V+D         P+T+MSL SGGDLVLRR  KA N        LDL SSF
Sbjct: 4   VGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSSF 63

Query: 62  MNSGAQCRPSAAGGGCRIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAVKT 121
           +NSG + R SA   G R RR++RRN RLVI+NEFAGQYEDSFDDVK QIQNYFTYKAV+T
Sbjct: 64  VNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVRT 123

Query: 122 VLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKK 181
           VLNQLYEMNPTQYRWFY+FV NHKPGDGKRFIRTLVKEKQDLAERVM+TRLHLY KWVKK
Sbjct: 124 VLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVKK 183

Query: 182 CDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           CDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 184 CDHAEIYKEISDENLDLMRERLMETVIWPSED 215

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BLAST of Sed0005000 vs. ExPASy Swiss-Prot
Match: Q8L9X2 (Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCX2 PE=1 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.4e-53
Identity = 110/203 (54.19%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD---LPVTNMSLTSGGDLVLRRNFKANNHLDLSSSFMNSGAQCRPSA 60
           MV A FV G+ V+D    P   +   + G +  ++      +L+L SSF  S    R S 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRKKILGKARNLELGSSFTGSRIVFRLSP 60

Query: 61  AGGGCRIRR--HRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAVKTVLNQLYEMN 120
                R+ R  +R+    L+++ + AG Y+D+F DV+ QI NYFTYKAV+TVL+QLYEMN
Sbjct: 61  K----RVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMN 120

Query: 121 PTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKE 180
           P QY WFYN ++ ++P DGKRF+R L KE Q+LAERVM+TRLHLY KW+KKCDH +IY+E
Sbjct: 121 PPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQE 180

Query: 181 ISDENLELMRERLMETVIWPSDD 199
           ISDENL LMRERLMETVIWPSDD
Sbjct: 181 ISDENLALMRERLMETVIWPSDD 199

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BLAST of Sed0005000 vs. ExPASy Swiss-Prot
Match: Q44212 (RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-08
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 90  DVKTQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLA 149
           D    +Q+Y TY+A++TVL QL E NP    W +NF    K  DG+++I  L  EK DLA
Sbjct: 9   DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAG-KVQDGEKYIEELFLEKPDLA 68

Query: 150 ERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERL 189
            R+M  R H+  + + +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-IAEFLPEMVVTGIQQANMEKRRQHL 105

[Close]

BLAST of Sed0005000 vs. ExPASy Swiss-Prot
Match: O86418 (RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rbcX PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-07
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 90  DVKTQIQNYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLA 149
           D    +Q+Y TY+A+ TVL QL E NP    W + F V  K  DG+ +++ L +E+ DLA
Sbjct: 9   DTAKTLQSYLTYQALMTVLAQLGETNPPLALWLHTFSVG-KVQDGEAYVKELFREQPDLA 68

Query: 150 ERVMVTRLHLYNKWVKKCDHAEIYKEISDENLELMRERL 189
            R+M  R H+  + V +     +   I   N+E  R+ L
Sbjct: 69  LRIMTVREHIAEE-VAEFLPEMVRSGIQQANMEQRRQHL 105

[Close]

BLAST of Sed0005000 vs. ExPASy Swiss-Prot
Match: Q8DIS6 (RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rbcX PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.2e-07
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 97  NYFTYKAVKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTR 156
           +Y TY+AV+TV+ QL E +P +  W + F       DG+R++  L +E+ DL  R++  R
Sbjct: 16  SYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVR 75

Query: 157 LHL 160
            HL
Sbjct: 76  EHL 78

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BLAST of Sed0005000 vs. ExPASy TrEMBL
Match: A0A5A7TJ10 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00620 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 167/215 (77.67%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNH------LDLSS 60
           MVGALFV GA V+D           PVTNMSL SGGDLVL+R  K  ++      +DL S
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGC-RIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKA 120
           SF+N G + + SA  GGC R RR++RRN RLVI NEFAGQYEDSFDDVK QIQNYFTYKA
Sbjct: 61  SFVNFGDEWQLSA--GGCRRSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKW 180
           VKTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKW
Sbjct: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180

Query: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Sed0005000 vs. ExPASy TrEMBL
Match: A0A5D3BAI6 (RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001050 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 167/215 (77.67%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNH------LDLSS 60
           MVGALFV GA V+D           PVTNMSL SGGDLVL+R  K  ++      +DL S
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGCR-IRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKA 120
           SF+N G + + SA  GGCR  RR++RRN RLVI NEFAGQYEDSFDDVK QIQNYFTYKA
Sbjct: 61  SFVNFGDEWQLSA--GGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKW 180
           VKTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKW
Sbjct: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180

Query: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Sed0005000 vs. ExPASy TrEMBL
Match: A0A0A0KX19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 166/214 (77.57%), Postives = 179/214 (83.64%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNHL------DLSS 60
           MVGALFV GA VVD           PVTNMSL SGGDLVL+R  KA ++L      DL S
Sbjct: 1   MVGALFVVGAPVVDSLPPCLSFDSSPVTNMSLRSGGDLVLQRKSKAKSYLTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGCRIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAV 120
           SF+N G + + S AGGG + +R++RRN RLV+ NEFAGQYEDSFDDVK QIQNYFTYKAV
Sbjct: 61  SFVNLGDEWQLS-AGGGRQSKRNQRRNRRLVVVNEFAGQYEDSFDDVKMQIQNYFTYKAV 120

Query: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWV 180
           KTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKWV
Sbjct: 121 KTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKWV 180

Query: 181 KKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           KKCDHAEIYK ISDENLELMRERLMETVIWPSDD
Sbjct: 181 KKCDHAEIYKGISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Sed0005000 vs. ExPASy TrEMBL
Match: A0A1S3BNA7 (uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.7e-82
Identity = 167/215 (77.67%), Postives = 179/215 (83.26%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD----------LPVTNMSLTSGGDLVLRRNFKANNH------LDLSS 60
           MVGALFV GA V+D           PVTNMSL SGGDLVL+R  K  ++      +DL S
Sbjct: 1   MVGALFVVGAPVIDSPPPCFSFDSSPVTNMSLRSGGDLVLQRKSKTKSYSTVSKSVDLRS 60

Query: 61  SFMNSGAQCRPSAAGGGCR-IRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKA 120
           SF+N G + + SA  GGCR  RR++RRN RLVI NEFAGQYEDSFDDVK QIQNYFTYKA
Sbjct: 61  SFVNFGDEWQLSA--GGCRQSRRNQRRNRRLVIVNEFAGQYEDSFDDVKMQIQNYFTYKA 120

Query: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKW 180
           VKTVLNQLYEMNPTQYRWFYNFVVNHKPG+GKRFIRTLVKEKQDLAERVM+TRLHLYNKW
Sbjct: 121 VKTVLNQLYEMNPTQYRWFYNFVVNHKPGEGKRFIRTLVKEKQDLAERVMITRLHLYNKW 180

Query: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD
Sbjct: 181 VKKCDHAEIYKEISDENLELMRERLMETVIWPSDD 213

[Close]

BLAST of Sed0005000 vs. ExPASy TrEMBL
Match: A0A6J1D422 (chaperonin-like RbcX protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017395 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.3e-81
Identity = 162/212 (76.42%), Postives = 175/212 (82.55%), Query Frame = 0


Query: 2   VGALFVAGAAVVDL--------PVTNMSLTSGGDLVLRRNFKANNH-------LDLSSSF 61
           VGA FV GA V+D         P+T+MSL SGGDLVLRR  KA N        LDL SSF
Sbjct: 4   VGASFVVGAPVLDSPALCLDSPPITSMSLRSGGDLVLRRKSKAKNRLAMPGSTLDLRSSF 63

Query: 62  MNSGAQCRPSAAGGGCRIRRHRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAVKT 121
           +NSG + R SA   G R RR++RRN RLVI+NEFAGQYEDSFDDVK QIQNYFTYKAV+T
Sbjct: 64  VNSGGEWRLSAGAVGHRSRRNQRRNRRLVIANEFAGQYEDSFDDVKMQIQNYFTYKAVRT 123

Query: 122 VLNQLYEMNPTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKK 181
           VLNQLYEMNPTQYRWFY+FV NHKPGDGKRFIRTLVKEKQDLAERVM+TRLHLY KWVKK
Sbjct: 124 VLNQLYEMNPTQYRWFYDFVTNHKPGDGKRFIRTLVKEKQDLAERVMITRLHLYGKWVKK 183

Query: 182 CDHAEIYKEISDENLELMRERLMETVIWPSDD 199
           CDHAEIYKEISDENL+LMRERLMETVIWPS+D
Sbjct: 184 CDHAEIYKEISDENLDLMRERLMETVIWPSED 215

[Close]

BLAST of Sed0005000 vs. TAIR 10
Match: AT5G19855.1 (Chaperonin-like RbcX protein )

HSP 1 Score: 209.1 bits (531), Expect = 3.1e-54
Identity = 110/203 (54.19%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 1   MVGALFVAGAAVVD---LPVTNMSLTSGGDLVLRRNFKANNHLDLSSSFMNSGAQCRPSA 60
           MV A FV G+ V+D    P   +   + G +  ++      +L+L SSF  S    R S 
Sbjct: 1   MVSAWFVVGSPVMDSSSSPCLCLDAHTTGTIRRKKILGKARNLELGSSFTGSRIVFRLSP 60

Query: 61  AGGGCRIRR--HRRRNGRLVISNEFAGQYEDSFDDVKTQIQNYFTYKAVKTVLNQLYEMN 120
                R+ R  +R+    L+++ + AG Y+D+F DV+ QI NYFTYKAV+TVL+QLYEMN
Sbjct: 61  K----RVSRIANRKSKKLLIVNEDVAGNYDDTFGDVQKQIVNYFTYKAVRTVLHQLYEMN 120

Query: 121 PTQYRWFYNFVVNHKPGDGKRFIRTLVKEKQDLAERVMVTRLHLYNKWVKKCDHAEIYKE 180
           P QY WFYN ++ ++P DGKRF+R L KE Q+LAERVM+TRLHLY KW+KKCDH +IY+E
Sbjct: 121 PPQYTWFYNHIITNRPTDGKRFLRALGKESQELAERVMITRLHLYGKWIKKCDHGKIYQE 180

Query: 181 ISDENLELMRERLMETVIWPSDD 199
           ISDENL LMRERLMETVIWPSDD
Sbjct: 181 ISDENLALMRERLMETVIWPSDD 199

The following BLAST results are available for this feature:

BLAST of Sed0005000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142113.1	9.7e-82	77.57	chaperonin-like RbcX protein 2, chloroplastic [Cucumis sativus] >KGN54180.1 hypo...	[more]
XP_008449714.1	9.7e-82	77.67	PREDICTED: uncharacterized protein LOC103491510 [Cucumis melo] >TYJ96137.1 RcbX ...	[more]
KAA0041415.1	9.7e-82	77.67	RcbX domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_023512052.1	3.7e-81	77.21	chaperonin-like RbcX protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022148835.1	4.8e-81	76.42	chaperonin-like RbcX protein 2, chloroplastic [Momordica charantia]	[more]

BLAST of Sed0005000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9X2	4.4e-53	54.19	Chaperonin-like RbcX protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q44212	4.3e-08	36.36	RuBisCO chaperone RbcX OS=Anabaena sp. (strain CA / ATCC 33047) OX=52271 GN=rbcX...	[more]
O86418	2.2e-07	35.35	RuBisCO chaperone RbcX OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) O...	[more]
Q8DIS6	8.2e-07	38.10	RuBisCO chaperone RbcX OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 ...	[more]

BLAST of Sed0005000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJ10	4.7e-82	77.67	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3BAI6	4.7e-82	77.67	RcbX domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KX19	4.7e-82	77.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291920 PE=4 SV=1	[more]
A0A1S3BNA7	4.7e-82	77.67	uncharacterized protein LOC103491510 OS=Cucumis melo OX=3656 GN=LOC103491510 PE=...	[more]
A0A6J1D422	2.3e-81	76.42	chaperonin-like RbcX protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Sed0005000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19855.1	3.1e-54	54.19	Chaperonin-like RbcX protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038052	Chaperonin-like RbcX superfamily	GENE3D	1.10.1200.210		coord: 77..198 e-value: 1.5E-48 score: 165.8
IPR038052	Chaperonin-like RbcX superfamily	SUPERFAMILY	158615	RbcX-like	coord: 83..198
IPR003435	Chaperonin-like RbcX	PFAM	PF02341	RcbX	coord: 92..191 e-value: 6.0E-21 score: 74.8
IPR003435	Chaperonin-like RbcX	PANTHER	PTHR33791	FAMILY NOT NAMED	coord: 1..198
None	No IPR available	PANTHER	PTHR33791:SF1	CHAPERONIN-LIKE RBCX PROTEIN 2, CHLOROPLASTIC	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0005000.1	Sed0005000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006457	protein folding
biological_process	GO:0110102	ribulose bisphosphate carboxylase complex assembly
molecular_function	GO:0044183	protein folding chaperone