Sed0004980 (gene) Chayote v1

Overview


Name	Sed0004980
Type	gene
Organism	Sechium edule (Chayote v1)
Description	HIG1 domain-containing protein
Location	LG08: 820965 .. 823914 (-)
RNA-Seq Expression	Sed0004980
Synteny	Sed0004980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAATAATTATTTCGTCAATCTTTTGGTCCAAATTCAAAACCCTAATTTAGTTTTCTGCCTTTTGTCATGCACCAGATCGACGGTATACTTTGATCTTCCGATTTCAAAGAATCGTAAATTTCTTGAATTAATCGTAGATATTCAAAAAGATGGTCGCCGCAGAACCCGATTTGGACGAGTTCTTCGATGGGAAGAAGCGCGTTAGAAATCCTCTGGTTCCAATTGGTAACAGCAAACATTTGATTCTATTTGTTTTTTTCTTGAATTTTGTAGTAAATTTATGTTGGGATTTAGGTTTTTGGCATCCATTTCATGTTCATTGATCAATTTGAAGTTCTCGATCTTTAGAATTGGAAGATATAGGTTTGTGTGTGAGTTGCAAGTTCGTTCGTTATTTTAAATGAATTCGATTAGATCAGAGTAATCTAAAACTTGATGCTTATTGAAGTTAGAAAAGGGGTTCCAATAATATTGGATTTCATTGAGGATTCTGAAGAATAGGCTGATTTAATTCTTCATTATAGTCGTCAATGATGCCGATGAACCTTGCTGTTAGTTTGGGTTGGCTTGAACGACGTTTTTATTATTAGTTATTGCAATCTTTTTTGTCAATTGCCGTTGGAAGGTGGTTGTGCTTCTGAATTTTTGTTCTTGCCCCTTTGATGTATGGTCGTCAACTAATCTTGGTATAAAGGAATTGATTTGGTGGGTTTGTATCTGACTTTCATTTTCGTAAAACTATCATGGTTAATCTAGGGGTGAAATGAATAATAGGTTCTATACATGCCACGAATTTAGGATTTGATATCACAAATATGATAGGTTTGGATAGTGTTTTAAAAGTTGAGCTTTAAATAAGGTGCGTGCCTTGTGGAACTTTTCGTGAAACCCTGAGGCGCGCCAAGGCGTGCACCTTGTGGACTTCGCTTTTTTACTTAAAGTTTAATAAATAACTCAATTCTTCAATGCAAGCCGACTTCATTTCTTATTTAAGTTGAATCTTATTTATTTATTTATTTTATATATATATATATATATATTATTCTTAGTTAAGCTTCATTTCTATTAATGAAATGAAGGTTAGTTGAATCTTCTGTGTGCTTAATATATTATTTTTGGTTAAGACTTTATTTATTTTGATGAAAGTGTTATTGTGTGTTCACACACACATATATATACAGTGTGCCTTGAGTAAAGAAGCCCACCCCCTTTAGTGTGCCTTGCACCTTCATGCTCCAGAAGCCTTTGCACCTTAGTGTACTTTGAGCTTTTTAAAACACAGGGTTTAAGCGTTAGTTTGAACTCGAAGAAATGCACTCAAATTGGCGTGAACACTCATACACACACACACATATACAACATTCTGTGATAATCATTCATAAGCAATTTTAGCATATATGTATTGGGATCTGAATCTTGGCTGATTTTGTTATGAAGTTTCGAGTGCTTAATGGCTACTTAGACAGTTATACTCTTTTCTTTCATGTGTGTTCTACCCAAGGCCTTAAATGTCGATGTTGACAGAAATGTTGAGGTCTCGACTTTGTGGAACTATAGATAAAATGCCAAGGTTGATGAATATTTCTGAAAAATCATAAATAAAAAAGTTCATAAAATATTGAAATTAACAAAATCCCCCTATCCCAAATGTTGTTGAATTAAAAAAAAAGTTTAAATTTCTTACTATTAATATTAAGTTTACCATAATGATATTTTAGTTATAATTTGACAATTTTTCTATGATACAATGGAAATGTGGACTCACCTCATATCGATGTCAACGCATAGATGTGTGAAAAATGTTAGCATGTCAACGAACATTTAAAACCTTGGTTATGTTCTAACTTCTCTTTTCTTTGTTGTGTATTGTATCTTTTGTGTGTGTTGTATCTTGGTTGGCTGGAGATTGTTATGAATTTTTTAAGGTTTATTAACTTCTTTTTAATTTTGGACATTTGAGAGGGTCCAGATACCTGTAAAAAATTAATTTTTAAATAGGTGACTACTATAGATTGAATCTCATTTCCTTTTCGTTCCCGATACCCTTTTTACAACAAGACCAACCTATAATGGTTTCTTTGCCATGTATTGTATCTTGGTTGGTTGGATTATTATTAAGTTTTGAAGGGTTAATGTCTCTTCGTACTCTTTCCTGTCATCTGGGTTCTATCTTGTTTATTGAAAGCCCGTATTGTATCTGGGTTATATCTTTTATTTTTAAGTTGGTGACTACCATATATTGTGTGGAGTTTTGAAAGGTTAATGACTCTTCATGCTCTTTTCTTTGATTTGTGTTGTACATTGGCTGGATTTGATTTGTGTTGTACCTTGGCTGGATTGTTGAGTTTAGAGGGATTTGATTTGGGTTGTACCTTGGTTGGATTGTTGTAAAGTTTTGAAGGGTTAATGGCTCCTTATACCCTGTTCTTTGATGGGTGTTGATTTTTCAGGTGCACTCATCACAGCTGGAGTTCTTACAGCAGGGTTGATCAGTTTTCGGCAAGGCAACTCTCACTTGGGACAGAAGCTAATGAGAGGTCGGGTGGTCGTCCAAGGTGTGACGGTGGCGCTTATGGTTGGCTCTGCCTACTACTATGGGGACAATCCATGGAATCGAAGCTAGACATTATAATGTGCATTATCAACAGCAGGAGATCTGTGTATCATTTAAATTCTCAGACTCGAAACTAAATTCCATCGCCTCTTTGCCGATCCATGCCCTGTTTTTATTTTACTGCATAATGGGCAGATCAAATTGCATCACTGAGTACTATTGTTCACTTAACCTAGCCTTAGAGGAGTCTGTCTAAGCTTCTCACAACAGTGGGGGATGCTATTGACATAGACTCTGAACTTATTGATTTGACTCAATTATGGGTCTATAATGTTGTTACATCAATATTCCTCAATTAAATAGCAAAAAGATAACAATTTCTTGTTTGGCCCAA

mRNA sequence

GTAAATAATTATTTCGTCAATCTTTTGGTCCAAATTCAAAACCCTAATTTAGTTTTCTGCCTTTTGTCATGCACCAGATCGACGGTATACTTTGATCTTCCGATTTCAAAGAATCGTAAATTTCTTGAATTAATCGTAGATATTCAAAAAGATGGTCGCCGCAGAACCCGATTTGGACGAGTTCTTCGATGGGAAGAAGCGCGTTAGAAATCCTCTGGTTCCAATTGGTGCACTCATCACAGCTGGAGTTCTTACAGCAGGGTTGATCAGTTTTCGGCAAGGCAACTCTCACTTGGGACAGAAGCTAATGAGAGGTCGGGTGGTCGTCCAAGGTGTGACGGTGGCGCTTATGGTTGGCTCTGCCTACTACTATGGGGACAATCCATGGAATCGAAGCTAGACATTATAATGTGCATTATCAACAGCAGGAGATCTGTGTATCATTTAAATTCTCAGACTCGAAACTAAATTCCATCGCCTCTTTGCCGATCCATGCCCTGTTTTTATTTTACTGCATAATGGGCAGATCAAATTGCATCACTGAGTACTATTGTTCACTTAACCTAGCCTTAGAGGAGTCTGTCTAAGCTTCTCACAACAGTGGGGGATGCTATTGACATAGACTCTGAACTTATTGATTTGACTCAATTATGGGTCTATAATGTTGTTACATCAATATTCCTCAATTAAATAGCAAAAAGATAACAATTTCTTGTTTGGCCCAA

Coding sequence (CDS)

ATGGTCGCCGCAGAACCCGATTTGGACGAGTTCTTCGATGGGAAGAAGCGCGTTAGAAATCCTCTGGTTCCAATTGGTGCACTCATCACAGCTGGAGTTCTTACAGCAGGGTTGATCAGTTTTCGGCAAGGCAACTCTCACTTGGGACAGAAGCTAATGAGAGGTCGGGTGGTCGTCCAAGGTGTGACGGTGGCGCTTATGGTTGGCTCTGCCTACTACTATGGGGACAATCCATGGAATCGAAGCTAG

Protein sequence

MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNPWNRS

Homology

[Close]

BLAST of Sed0004980 vs. NCBI nr
Match: KAF7838353.1 (RING-H2 finger protein ATL48-like [Senna tora])

HSP 1 Score: 140.6 bits (353), Expect = 6.1e-30
Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 5  EPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTV 64
          +P L+EFF  KKRVRNP VPIGALITAGVLTAGLISFRQGNSHLGQKLMR RVVVQG TV
Sbjct: 8  DPTLEEFFPEKKRVRNPFVPIGALITAGVLTAGLISFRQGNSHLGQKLMRARVVVQGATV 67

Query: 65 ALMVGSAYYYGDNPWNRS 83
          ALMVG+AYYYGDNPW  S
Sbjct: 68 ALMVGTAYYYGDNPWRSS 85

[Close]

BLAST of Sed0004980 vs. NCBI nr
Match: XP_028781744.1 (LOW QUALITY PROTEIN: RING-H2 finger protein ATL48-like [Prosopis alba])

HSP 1 Score: 140.6 bits (353), Expect = 6.1e-30
Identity = 67/82 (81.71%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M A +  L+EFF+ KKRVRNPLVP+GA ITAGVLTAGLISFRQGNSHLGQKLMR RVVVQ
Sbjct: 4  MGADDRSLEEFFEEKKRVRNPLVPVGAFITAGVLTAGLISFRQGNSHLGQKLMRARVVVQ 63

Query: 61 GVTVALMVGSAYYYGDNPWNRS 83
          G TVALMVG+AYYYGDNPW  S
Sbjct: 64 GATVALMVGTAYYYGDNPWQSS 85

[Close]

BLAST of Sed0004980 vs. NCBI nr
Match: XP_031276990.1 (RING-H2 finger protein ATL48-like [Pistacia vera])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          MVA EP  ++ ++ KKRVRNPLVP+GAL+TAGVLTAGLISFR+GNSHLGQKLMR RVVVQ
Sbjct: 5  MVAVEPSFEDLYEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSHLGQKLMRARVVVQ 64

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYGDNPW
Sbjct: 65 GATVALMVGTAYYYGDNPW 83

[Close]

BLAST of Sed0004980 vs. NCBI nr
Match: XP_018831560.1 (RING-H2 finger protein ATL48-like [Juglans regia])

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M  AEP+L++FF+ KKRVRNPLVPIGAL+TAGVLTAGLISF+QGNSHLGQ LMR RVV Q
Sbjct: 1  MGTAEPNLEKFFEEKKRVRNPLVPIGALLTAGVLTAGLISFKQGNSHLGQVLMRARVVAQ 60

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYGDNPW
Sbjct: 61 GATVALMVGTAYYYGDNPW 79

[Close]

BLAST of Sed0004980 vs. NCBI nr
Match: XP_040985753.1 (RING-H2 finger protein ATL48-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M  AEP+L+ FF+ KKRVRNPLVPIGAL+TAGVLTAGLISF+QGNSHLGQ LMR RVV Q
Sbjct: 1  MGTAEPNLENFFEEKKRVRNPLVPIGALLTAGVLTAGLISFKQGNSHLGQVLMRARVVAQ 60

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYGDNPW
Sbjct: 61 GATVALMVGTAYYYGDNPW 79

[Close]

BLAST of Sed0004980 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-30
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M + EPD+++ F  KKRVRNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ LMR RVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GVTVALMVGSAYYYGDNPWNR 82
          G TVALMVG+ YYYGDNPW +
Sbjct: 61 GATVALMVGTGYYYGDNPWKK 81

[Close]

BLAST of Sed0004980 vs. ExPASy Swiss-Prot
Match: Q9BW72 (HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 15 KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMV 69
          +K   NP+VPIG L TA  LT GL SF +GNS   Q +MR R+  QG TVA ++
Sbjct: 41 RKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAIL 94

[Close]

BLAST of Sed0004980 vs. ExPASy Swiss-Prot
Match: Q9CQJ1 (HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-07
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 15 KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVT-VALMVGSA 72
          +K   NP+VPIG L TA  LT GL  F +G SH  Q +MR R+  QG T VA+++G A
Sbjct: 41 RKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLA 98

[Close]

BLAST of Sed0004980 vs. ExPASy Swiss-Prot
Match: Q2GMG9 (Respiratory supercomplex factor 1, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=RCF1 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 25/63 (39.68%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 15 KKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYY 74
          +K    PLVPIG ++T    T    + R+G+ H  Q++ R RV  QG TV  MVG   YY
Sbjct: 28 RKLKEEPLVPIGCILTIAAFTNAYRAMRRGDHHKVQRMFRARVAAQGFTVLAMVGGGMYY 87

Query: 75 GDN 78
           ++
Sbjct: 88 AED 90

[Close]

BLAST of Sed0004980 vs. ExPASy Swiss-Prot
Match: Q6CBQ8 (Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RCF1 PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-07
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 21 PLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQGVTVALMVGSAYYYGDNP 79
          PLVP+G L T G L     + R GN     ++   RV  QG+TVA ++G A YYG +P
Sbjct: 34 PLVPLGCLATCGALILSARALRVGNKRQANRMFFARVAFQGLTVAALIGGAMYYGQDP 91

[Close]

BLAST of Sed0004980 vs. ExPASy TrEMBL
Match: A0A2I4FIT1 (RING-H2 finger protein ATL48-like OS=Juglans regia OX=51240 GN=LOC108999200 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 8.6e-30
Identity = 65/79 (82.28%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M  AEP+L++FF+ KKRVRNPLVPIGAL+TAGVLTAGLISF+QGNSHLGQ LMR RVV Q
Sbjct: 1  MGTAEPNLEKFFEEKKRVRNPLVPIGALLTAGVLTAGLISFKQGNSHLGQVLMRARVVAQ 60

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYGDNPW
Sbjct: 61 GATVALMVGTAYYYGDNPW 79

[Close]

BLAST of Sed0004980 vs. ExPASy TrEMBL
Match: A0A2N9FS75 (HIG1 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17802 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M  AEP+L+EFF+ KKRVRNPLVP+GA +TAGVLTAGLISFRQGNS LGQ LMR RVVVQ
Sbjct: 1  MGTAEPNLEEFFEEKKRVRNPLVPVGAFVTAGVLTAGLISFRQGNSRLGQVLMRARVVVQ 60

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYGDNPW
Sbjct: 61 GATVALMVGTAYYYGDNPW 79

[Close]

BLAST of Sed0004980 vs. ExPASy TrEMBL
Match: A0A2P2KAW7 (HIG1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M AAEP+L++ F+ KKRVRNPLVP+GAL+TAGVLTAGLISFRQGNS LGQ LMR RVVVQ
Sbjct: 4  MGAAEPNLEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRQGNSQLGQVLMRARVVVQ 63

Query: 61 GVTVALMVGSAYYYGDNPWNRS 83
          G TVALMVG+A+YYGDNPW +S
Sbjct: 64 GATVALMVGTAFYYGDNPWKKS 85

[Close]

BLAST of Sed0004980 vs. ExPASy TrEMBL
Match: A0A2P5CJ67 (Hypoxia induced protein, domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_148650 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M +AEPD ++FF+ KKRVRNPLVP+GAL+TAGVLTAGLISFRQGNS LGQ LMR RVV Q
Sbjct: 1  MGSAEPDFEDFFEEKKRVRNPLVPVGALLTAGVLTAGLISFRQGNSQLGQMLMRARVVAQ 60

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYGDNPW
Sbjct: 61 GATVALMVGTAYYYGDNPW 79

[Close]

BLAST of Sed0004980 vs. ExPASy TrEMBL
Match: A0A5N6RP69 (HIG1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019085 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-29
Identity = 67/79 (84.81%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M  A P+LDEFF  KKRVRNPLVP+GALITAGVLTAGLISFRQGNS LGQKLMR RVVVQ
Sbjct: 1  MGEATPNLDEFFPEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQKLMRARVVVQ 60

Query: 61 GVTVALMVGSAYYYGDNPW 80
          G TVALMVG+AYYYG NPW
Sbjct: 61 GATVALMVGTAYYYGGNPW 79

[Close]

BLAST of Sed0004980 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-31
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MVAAEPDLDEFFDGKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRGRVVVQ 60
          M + EPD+++ F  KKRVRNPLVP+GAL+TAGVLTAGLISFR+GNS LGQ LMR RVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 61 GVTVALMVGSAYYYGDNPWNR 82
          G TVALMVG+ YYYGDNPW +
Sbjct: 61 GATVALMVGTGYYYGDNPWKK 81

The following BLAST results are available for this feature:

BLAST of Sed0004980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7838353.1	6.1e-30	85.90	RING-H2 finger protein ATL48-like [Senna tora]	[more]
XP_028781744.1	6.1e-30	81.71	LOW QUALITY PROTEIN: RING-H2 finger protein ATL48-like [Prosopis alba]	[more]
XP_031276990.1	1.0e-29	81.01	RING-H2 finger protein ATL48-like [Pistacia vera]	[more]
XP_018831560.1	1.8e-29	82.28	RING-H2 finger protein ATL48-like [Juglans regia]	[more]
XP_040985753.1	2.3e-29	82.28	RING-H2 finger protein ATL48-like [Juglans microcarpa x Juglans regia]	[more]

BLAST of Sed0004980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X843	1.7e-30	75.31	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q9BW72	5.2e-08	51.85	HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE...	[more]
Q9CQJ1	2.0e-07	50.00	HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1	[more]
Q2GMG9	3.4e-07	39.68	Respiratory supercomplex factor 1, mitochondrial OS=Chaetomium globosum (strain ...	[more]
Q6CBQ8	3.4e-07	43.10	Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain ...	[more]

BLAST of Sed0004980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I4FIT1	8.6e-30	82.28	RING-H2 finger protein ATL48-like OS=Juglans regia OX=51240 GN=LOC108999200 PE=4...	[more]
A0A2N9FS75	1.1e-29	82.28	HIG1 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17802 PE=...	[more]
A0A2P2KAW7	1.1e-29	79.27	HIG1 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A2P5CJ67	1.5e-29	81.01	Hypoxia induced protein, domain containing protein OS=Parasponia andersonii OX=3...	[more]
A0A5N6RP69	1.5e-29	84.81	HIG1 domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019085 PE...	[more]

BLAST of Sed0004980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48030.1	1.2e-31	75.31	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 20..69 e-value: 5.3E-18 score: 65.0
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..82 score: 21.0769
None	No IPR available	GENE3D	6.10.140.1320		coord: 20..81 e-value: 2.0E-16 score: 61.5
None	No IPR available	PANTHER	PTHR12297	HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED	coord: 4..78
None	No IPR available	PANTHER	PTHR12297:SF3	HIG1 DOMAIN FAMILY MEMBER 2A	coord: 4..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004980.1	Sed0004980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane