Sed0004960 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTATAGTAGACCGTTGGTTACCAACCACGTGGAATGATAATGTGGAAAAATTGGAGGTATATACTTAGGCTTGATATGTGATAAAAGAAAGGCATATCATAATTAATAAAAATTAGAAACTATGGAGAGGTGCAAGCAAGAAGCAAAATGGGTATTCGTGGCGTGGCTGGTGATAGGCTCGATCACGATGGTTAAGTCGACTCAATTCACCGAGTGCTACTTGCCTTGCACCCTCAGATGTGTCCCTTTTATAGCACTATGTCCCGATTATTGCTTGCGTGGCTGCGTCATGCCCGGCGCGCGAGTCAACGACCACAACATTGAATTCCATACCGCTCAACAAAATCAACTCTTCTGTCGGCTCGGATGCGCGTCTTCCACTTGTTCCATCCTTAGCACCAAGGAAAATCCAGGTTCTATTTCTTTTTTTAATTTATTTATGAGTGTTCTGATTAGACGTAAGTCAATTTTTTTCATTAGATGGTCTGTGAGTGCTCGAAGCAACTTAATTCTTATGTAGGTGGTCATTAGGTATGTTCAATTGATTCGATCGACCGAATATGGGAGATCAGTCGATTTTCAAATGTATAGAGGTTGGTGTTAGTAAGAAAAATATTTAATAAAAAACATTTCAATTATGTCGACCGGTTAGAAAAATAAATTATTTATATAATATTAATATTTTTATATTTAATAGACTTCTTATTAATTTTAAACTTAAATGTGTTTAAAAAAATTATTGGTTATGCTTAATTTTTTTTAAATAATTCTTAAAATTTCATTTAAAATTTTAGAATAAATATGTTTTTAATTAAAGAAAAATAAATTAATTAATTAACCAACTTACGTCGACCGAACCGACCGACTTAACCAATAAGTCAGTTTCGGTGCCATTTTTAAGCATTTTAATATATTGGTTTCGGTGTTGATTTTTACCAAAAAATTGACATCAACCGATTGATGAATACCTCGAATGATAGTCATATTTTAATATAACCTTTTAGTTTTCCAAGATTCACTATATCACTAAGGCTAATCGGTTAGATTCTAAACCTTAATCATCATAATTTTAATATAGGAAGCTAAAAAAAACATTTTCCCTAAAATTTCGAGAGGTTGATTTTTGAAGAAACAAACTCTTTTGTTTTCAACTAATTACGTTTAAAGTCTACGCATTTTTTTTTTAAATATGATTTCTTTTTTATGGTTCTGAAGAAAGTGGTGGAAAATTAATTTCTAACCGAATGCTTACATGATTCGACCTTTAATTTTTTAGTTTTCCAAAACTCTCTAGATGACTAAGCGAATCCATAATTGAAGTATAGCATTTTCGAACTTATTATAAAAGTGTAGTTGTTATTATTAAATATCAACAAGAGTAGTAATTGAGCAGTATCAGACACATTATGATTGTAAGGTCATGTGTTCGAATTCTCCAATCTTTAATAGCAATCTAAATAAAAAAATATTATTATTAAATTATAAGTTTCGTATTAGGAGAAAATTTAGAATTTAGATCTCGTAATTTTAAAAACTAGATAAACTTAATAAATAATCTAACAATAATGTCATTGGATAATAAATGAAATGATATTTCATAAATAAGGAAAAAAAACCCTTTGGAGCATTACACTCTACTTTTTTTGCCGTAGAATTTTTTAAATAATTTATCTATAATACATAATTTTTTATTATTGATAGAACTCAGTCAGTGATAGGATGAGTCTACCACCGATTGAGCTCTATGACAAATTAATGATAGAAATCAATTTTCTATCAATTTTAAAACTTGGTGATAGAATGAATCTACCACTGATTAAATTTTATTAGTGTTAGAATTAGAATTCAACCAGTAATATAACTCAATTGATGGATTTCATGCTACAAATGAATTAGTTTTGATGGTGTGTTGTAGATGGAAATATTTTGCTATTTTTAATTATAGATGCAAAATACTCAAAATTAAAATTAATATTTAAAGACCAAAACTAAATAAATTATAGATGGAAATATTTTGCTATTTTTAGGTATAATATTTAAGTTTAGATCTTTTTAGACTTTAACATAAAAGAAACATTTTTTCTAAGTTCATTAATTTTATTGTAAATAATTTACGTCTATGGATTTGCCTAATATATATTTTGATTATGTTGATGCAGATGCCGATGAAGTGGAGTCTTGTACGAATTCCTGCAACCAAACATGCTCCCTCACTTATCCAAAATAATTCCTTTTTATTCATTTATTTACTTTTGGTATAAAGTTCTACTAATGTTGTACTATATTTACTTATCATCAATCAATTTCACATTTTATTACCAAGAAAGAAA GTATAGTAGACCGTTGGTTACCAACCACGTGGAATGATAATGTGGAAAAATTGGAGGTATATACTTAGGCTTGATATGTGATAAAAGAAAGGCATATCATAATTAATAAAAATTAGAAACTATGGAGAGGTGCAAGCAAGAAGCAAAATGGGTATTCGTGGCGTGGCTGGTGATAGGCTCGATCACGATGGTTAAGTCGACTCAATTCACCGAGTGCTACTTGCCTTGCACCCTCAGATGTGTCCCTTTTATAGCACTATGTCCCGATTATTGCTTGCGTGGCTGCGTCATGCCCGGCGCGCGAGTCAACGACCACAACATTGAATTCCATACCGCTCAACAAAATCAACTCTTCTGTCGGCTCGGATGCGCGTCTTCCACTTGTTCCATCCTTAGCACCAAGGAAAATCCAGATGCCGATGAAGTGGAGTCTTGTACGAATTCCTGCAACCAAACATGCTCCCTCACTTATCCAAAATAATTCCTTTTTATTCATTTATTTACTTTTGGTATAAAGTTCTACTAATGTTGTACTATATTTACTTATCATCAATCAATTTCACATTTTATTACCAAGAAAGAAA ATGGAGAGGTGCAAGCAAGAAGCAAAATGGGTATTCGTGGCGTGGCTGGTGATAGGCTCGATCACGATGGTTAAGTCGACTCAATTCACCGAGTGCTACTTGCCTTGCACCCTCAGATGTGTCCCTTTTATAGCACTATGTCCCGATTATTGCTTGCGTGGCTGCGTCATGCCCGGCGCGCGAGTCAACGACCACAACATTGAATTCCATACCGCTCAACAAAATCAACTCTTCTGTCGGCTCGGATGCGCGTCTTCCACTTGTTCCATCCTTAGCACCAAGGAAAATCCAGATGCCGATGAAGTGGAGTCTTGTACGAATTCCTGCAACCAAACATGCTCCCTCACTTATCCAAAATAA MERCKQEAKWVFVAWLVIGSITMVKSTQFTECYLPCTLRCVPFIALCPDYCLRGCVMPGARVNDHNIEFHTAQQNQLFCRLGCASSTCSILSTKENPDADEVESCTNSCNQTCSLTYPK Homology
BLAST of Sed0004960 vs. NCBI nr
Match: XP_008461039.1 (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 108.6 bits (270), Expect = 3.7e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 0
BLAST of Sed0004960 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida]) HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19 Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Sed0004960 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus]) HSP 1 Score: 105.5 bits (262), Expect = 3.2e-19 Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 0
BLAST of Sed0004960 vs. NCBI nr
Match: XP_022992447.1 (thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2 [Cucurbita maxima]) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18 Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 0
BLAST of Sed0004960 vs. NCBI nr
Match: XP_023547567.1 (thionin-like protein 2 [Cucurbita pepo subsp. pepo] >XP_023547568.1 thionin-like protein 2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 102.4 bits (254), Expect = 2.7e-18 Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 0
BLAST of Sed0004960 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 9.0e-09 Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0
BLAST of Sed0004960 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = 0
BLAST of Sed0004960 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19 Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 0
BLAST of Sed0004960 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 7.6e-19 Identity = 55/122 (45.08%), Postives = 75/122 (61.48%), Query Frame = 0
BLAST of Sed0004960 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.2e-18 Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 0
BLAST of Sed0004960 vs. ExPASy TrEMBL
Match: A0A498J1L7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000154 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 7.3e-14 Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = 0
BLAST of Sed0004960 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. ) HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10 Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0
BLAST of Sed0004960 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). ) HSP 1 Score: 52.4 bits (124), Expect = 3.0e-07 Identity = 22/64 (34.38%), Postives = 38/64 (59.38%), Query Frame = 0
BLAST of Sed0004960 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 3.6e-05 Identity = 17/40 (42.50%), Postives = 28/40 (70.00%), Query Frame = 0
BLAST of Sed0004960 vs. TAIR 10
Match: AT5G36910.1 (thionin 2.2 ) HSP 1 Score: 41.2 bits (95), Expect = 6.8e-04 Identity = 18/42 (42.86%), Postives = 27/42 (64.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|