Sed0004959 (gene) Chayote v1

Overview


Name	Sed0004959
Type	gene
Organism	Sechium edule (Chayote v1)
Description	binding partner of ACD11 1-like
Location	LG06: 40249512 .. 40252470 (+)
RNA-Seq Expression	Sed0004959
Synteny	Sed0004959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCTTTCATCAGAAGCTTTCTCGAACTTATTCTTTTTTACAGAGATTTCATTTTCTGAAAGAGTCAATTCGTTCATCTTCATCTGCAAGTTCTTCACATTTCAACGAACGAAGAGTCGAATCAATTTGCCGTTGCAGCGAAGCCATGAATCCCGGTGGCTACACGGTTGAAGTGACGGGCTTGTCTCCCAAAGCAACGGAGAAGGATGTCCTCGATTTCTTCGCTTTCTCCGGCGCAATCGAGCTCGTTGAGATTGTGAGGTATTCGTTTCTTCCGATTCTGATTCCATGTTCTTGAGTCTGTAATTTCACGATCCTAGCATCTGTGTTTAGGTCAACAACTCGTTTGCTTAATTGATGGTTTTGAGGTTCGAAGAATCGGCTGGTTTACTGTTTCGTAATGCATACTTGAAGTTTGTGGTGTTTTTGTTCGATTTTGTTTTAGTTTTGTTAGAAATTGCTTGTTGTGAGGTTTTTAGTTTGATGGAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACGTTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGTGAGTAATTTGATCTCCAAACAAGCTTCACGCCTACAATACAGCATTTGATTGCATTCTTAAATTACTCTTTTTTTTACTGGTTCTATGAAAACATTTGATGTTTATCTATTTTTTGTTTTTTTTTCTTTATAGTATTTGTTTCTCTGACATTTGATATTAATATAAACAGGAGAATCTTTCGGATGTTCTAGTTTTAAAGAATATAATGATATGGAATCTGGATTTAATATTGTATTGGATCGGTAGAATAGTGAAAACGCAATCTTGACTTATGAAGCACATGTATAGTTTATTTAAATGCCAGATTAAATCGTTCTTTTTATATGAACAAACTCTTGAAATGCGGTAATGGTTTAGTAGGCATTGTTATGTGGTTAACTTGTGTCGATGTGGCACATATGTGGCAATTTGATTGTAAAAATAAATGCAATGGCGTCCCCAAGGGTTGACGCAGTGGTTGAAGACTTGGGCTTTAAGGGTATGCTGTCCTCAAGGTTCCGAGTTTGAGTCTTCCCAGTGACAGTACTCTTTTGATGTCTCTGGTGCCTTGCCTAAGGATGGGCGTGGTTACCCTTGTTTCAAAAATAAATGCAATGACACTTATTTTTTGTCGATTGTGAAAACTATATGCACAATTTGCTCTGGCTTCCTTCATTTTAATTTGGTGAATTATCTCTGTCTTTCCTTGATGAAGCAACCAACTGCCTCTGTGGAGGATAAGGATTAAACCCCTCTTTTTCTGGATTCCTATTAATAGTGAAGAGGTGCATTCGTTTTCTCTAGTTAGGCCCTTTTGTTAAATAATATATTAATAGAAAGCAATTATTAAAATGGAAATAATGTAACAGAAGTTGGCTTTCAAATAATGGATGTTGTTCTTTAGTATTGAACCGAAAAAGTATGGTTTTGGCTTCATCAAATTTGAAAAAGCCTTGATAGGTGGCATTGGAATGTTCTAAGAAGCACGGGCATGGATATAACTGTGCATCCTATTGAAAAAGCCTTAAAGGACCTGTTTATTATTGTGTATACGTGGCACTTAAAATATGTTAGGCTTATGAGATATCAGAATCTTCTTATTAACAAGAAAAAGAATACATTAGAGATTATAACATTGTTGTTGTTAAATCTGTGATTATAGATAACAGCTTTGTTGTTGTTTAGATTCCATAATTTGTTTTATTTATAGTGAATCTGCTAGACAAATTTATCTCAACATCTCTTTTGCTGCAAATTTGCATTACTTTACGAAATTAACTTAATGGAATTTTAACTACATAAGAATAAGATCAATTTCCTCTTGGATGCAAATGATTAAGGAGTTCTATATGGATAGTTTCAGTATGTCAAGTAGCAACTGTTCTGGTTTGATCATTCTGTTTATTCTTTGTCTACTATTAGTTTTTCATTCAACGTTCATTTCTTGTCATGTGCTTAATGATGTTTTTAATACCATTATTTACCTAATCGTACTTCATGCTGTTAAATTTTCTCCGAAGACACAATGATGTTTTTCATCCCTTGCTTTTCCACCCGATAACAATGATCATGTTCTAGACATCAATATCTGATTATTTCAGGGGGCGACAATTGTTGACCAACCCGTGTGCATAACACGGTGGGGACATTTTGATGAAGAATATGATTTTTGGAGTAGGTCTTCCAGTTACCATGAAGAAGACAGCTCTTCTGCTGTAAGTATAAAAATATTGATTATTTCAAAAAAAAAAGTATTAAAATATTGATATTTATTAATATTAACTACCTTTTGATTTGTTATTGAATTCTCTTCCTACTTGTAGTCGGCTCAAGGAAGTCAGTTTGTTTCCACTGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGCAAAGATACATTGACCAAAGCCAAAGCCTTAGATGAATCTCACCAGGTCTCAGCAATGGCAGCAGCTAAGGTAGCTGATATGAGTAATAGAATTGGCCTTACCGACATGATCGGTGCGGGTTATGAAGCGGTTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACGAAATCAGCCATATCAGCCACTGGAAGAACGGCTGCTGCTGCTGCCGATACCGTAGTCAAGAGTAGCTACTTCTCCAAAGGAGCTCTTTTCATGTCTGATGCACTGAATCGGGCAGCCAAATTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAAGACATTAGATAGTCCTGCTCATTCAATGTAAATACAAACTGTAGAATTTGTAAAAGTTAATACTGATATTTTATCAGAGTGTAAACTTGTATGCATAAATTTTACATTTCATAGAGTTTAATCTCACTAATCATTTAAATTCCACAAATATTCGGTAAAATATAT

mRNA sequence

TAGCTTTCATCAGAAGCTTTCTCGAACTTATTCTTTTTTACAGAGATTTCATTTTCTGAAAGAGTCAATTCGTTCATCTTCATCTGCAAGTTCTTCACATTTCAACGAACGAAGAGTCGAATCAATTTGCCGTTGCAGCGAAGCCATGAATCCCGGTGGCTACACGGTTGAAGTGACGGGCTTGTCTCCCAAAGCAACGGAGAAGGATGTCCTCGATTTCTTCGCTTTCTCCGGCGCAATCGAGCTCGTTGAGATTGTGAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACGTTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGGGCGACAATTGTTGACCAACCCGTGTGCATAACACGGTGGGGACATTTTGATGAAGAATATGATTTTTGGAGTAGGTCTTCCAGTTACCATGAAGAAGACAGCTCTTCTGCTTCGGCTCAAGGAAGTCAGTTTGTTTCCACTGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGCAAAGATACATTGACCAAAGCCAAAGCCTTAGATGAATCTCACCAGGTCTCAGCAATGGCAGCAGCTAAGGTAGCTGATATGAGTAATAGAATTGGCCTTACCGACATGATCGGTGCGGGTTATGAAGCGGTTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACGAAATCAGCCATATCAGCCACTGGAAGAACGGCTGCTGCTGCTGCCGATACCGTAGTCAAGAGTAGCTACTTCTCCAAAGGAGCTCTTTTCATGTCTGATGCACTGAATCGGGCAGCCAAATTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAAGACATTAGATAGTCCTGCTCATTCAATGTAAATACAAACTGTAGAATTTGTAAAAGTTAATACTGATATTTTATCAGAGTGTAAACTTGTATGCATAAATTTTACATTTCATAGAGTTTAATCTCACTAATCATTTAAATTCCACAAATATTCGGTAAAATATAT

Coding sequence (CDS)

ATGAATCCCGGTGGCTACACGGTTGAAGTGACGGGCTTGTCTCCCAAAGCAACGGAGAAGGATGTCCTCGATTTCTTCGCTTTCTCCGGCGCAATCGAGCTCGTTGAGATTGTGAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACGTTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGGGCGACAATTGTTGACCAACCCGTGTGCATAACACGGTGGGGACATTTTGATGAAGAATATGATTTTTGGAGTAGGTCTTCCAGTTACCATGAAGAAGACAGCTCTTCTGCTTCGGCTCAAGGAAGTCAGTTTGTTTCCACTGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGCAAAGATACATTGACCAAAGCCAAAGCCTTAGATGAATCTCACCAGGTCTCAGCAATGGCAGCAGCTAAGGTAGCTGATATGAGTAATAGAATTGGCCTTACCGACATGATCGGTGCGGGTTATGAAGCGGTTAAAACCATGGATGAGAAGTACCACGTATTGCAGACAACGAAATCAGCCATATCAGCCACTGGAAGAACGGCTGCTGCTGCTGCCGATACCGTAGTCAAGAGTAGCTACTTCTCCAAAGGAGCTCTTTTCATGTCTGATGCACTGAATCGGGCAGCCAAATTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAA

Protein sequence

MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVSTAVTMAQEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVKTMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSRGLEH

Homology

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BLAST of Sed0004959 vs. NCBI nr
Match: XP_022945905.1 (binding partner of ACD11 1-like [Cucurbita moschata])

HSP 1 Score: 420.2 bits (1079), Expect = 1.2e-113
Identity = 220/244 (90.16%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S YHEED +  SAQ SQFVS   TAV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. NCBI nr
Match: KAG7013155.1 (Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 420.2 bits (1079), Expect = 1.2e-113
Identity = 220/244 (90.16%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 98  MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 157

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S YHEED +  SAQ SQFVS   TAV+MA
Sbjct: 158 CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMA 217

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 218 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 277

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 278 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 337

Query: 241 GLEH 242
           GLEH
Sbjct: 338 GLEH 341

[Close]

BLAST of Sed0004959 vs. NCBI nr
Match: XP_022968306.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 419.1 bits (1076), Expect = 2.6e-113
Identity = 219/244 (89.75%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S YHEED + ASAQ SQF S   TAV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPASAQRSQFASTTGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALF+SDALNRAAK AADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFISDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. NCBI nr
Match: KAG6574098.1 (Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 418.7 bits (1075), Expect = 3.4e-113
Identity = 219/244 (89.75%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 98  MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 157

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S YHEED +  SAQ SQFVS   TAV+MA
Sbjct: 158 CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMA 217

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 218 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 277

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 278 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 337

Query: 241 GLEH 242
           GL+H
Sbjct: 338 GLKH 341

[Close]

BLAST of Sed0004959 vs. NCBI nr
Match: XP_023541311.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 418.3 bits (1074), Expect = 4.5e-113
Identity = 220/244 (90.16%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S  HEED + ASAQ SQFVS   TAV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGDHEEDGTPASAQRSQFVSTAGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.6e-31
Identity = 91/238 (38.24%), Postives = 137/238 (57.56%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I +S E   +AYVTFK+    ETA LLSGA
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEH--SAYVTFKETQGAETAVLLSGA 66

Query: 67  TIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVSTAVTMAQEVVKTMLA 126
           +I DQ V I       E    +S  ++ H E  SS +        + V  A++VV +MLA
Sbjct: 67  SIADQSVII-------ELAPNYSPPAAPHAETQSSGA-------ESVVQKAEDVVSSMLA 126

Query: 127 MGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAG----YEAVKTMDEK 186
            G++LGKD + KAKA DE H  ++ A A VA +  +IGL+  + AG     E +K +D+ 
Sbjct: 127 KGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQN 186

Query: 187 YHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSRGLE 241
           + V + TKS  +A  +T ++A   V+K+ Y   G  + + A NR A+ A ++G +  E
Sbjct: 187 FQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKE 227

[Close]

BLAST of Sed0004959 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.5e-07
Identity = 54/214 (25.23%), Postives = 90/214 (42.06%), Query Frame = 0


Query: 8   VEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGAT 67
           V VT +SP+ TEK + DFF+F G +  +   +SGE   TA + F+   + +TA LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGETQ-TAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSAS------AQGSQFVSTAVTMAQEVV 127
           +    + IT                    ED  +AS      A G Q           ++
Sbjct: 65  LGQNKIQIT-------------------SEDGGAASTTDQGGAGGDQAARQEDKPRSAII 124

Query: 128 KTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVKTMDE 187
             +L+ GY L   TL K+  LD+S+ VS+                 ++ +    V++++E
Sbjct: 125 SELLSRGYHLSDVTLEKSIQLDQSYGVSSK-------------FKGILESALSGVRSVNE 184

Query: 188 KYHVLQTTKSAISATGRTAAAAADTVVKSSYFSK 216
           +YHV +      +    +      + + S+YF K
Sbjct: 185 RYHVTEKANEVDNKFAISDKLNRTSSLVSTYFHK 185

[Close]

BLAST of Sed0004959 vs. ExPASy TrEMBL
Match: A0A6J1G2B1 (binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450009 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 5.7e-114
Identity = 220/244 (90.16%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S YHEED +  SAQ SQFVS   TAV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. ExPASy TrEMBL
Match: A0A6J1HUH9 (binding partner of ACD11 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467575 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.3e-113
Identity = 219/244 (89.75%), Postives = 229/244 (93.85%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPKATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVS---TAVTMA 120
           CLLSGATIVDQ VCITRWGHFDEE+DFWSR S YHEED + ASAQ SQF S   TAV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPASAQRSQFASTTGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+SNRIGLTDMIGAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           TMDEKYHVLQTTKSAISATGRTAAAAADTVV+SSYFS+GALF+SDALNRAAK AADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFISDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. ExPASy TrEMBL
Match: A0A0A0KSM6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604930 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.5e-110
Identity = 214/244 (87.70%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPVATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVST---AVTMA 120
           CLLSGA IVDQ VCITRWGHFD+E+ FWSR   + EEDS+ ASAQ SQF+S+   AVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           QEVVKTMLAMGYVLGKDTLTKAKA DESHQVSA AAAKVAD+S+RIGLTDM+GAGYEAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. ExPASy TrEMBL
Match: A0A5D3CVI0 (Binding partner of ACD11 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00120 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.2e-109
Identity = 212/244 (86.89%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIVRSG+DACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGDDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVST---AVTMA 120
           CLLSGA IVDQ VCITRWGHFD+E+ FWSR   + EEDS+SASAQ SQF+S+   AVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           QEVVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+S+RIGLTDM+GAG+EAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGFEAVK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. ExPASy TrEMBL
Match: A0A1S3BET5 (binding partner of ACD11 1 OS=Cucumis melo OX=3656 GN=LOC103489100 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.2e-109
Identity = 212/244 (86.89%), Postives = 228/244 (93.44%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKDVLDFFAFSGAIELVEIVRSG+DACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGDDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVST---AVTMA 120
           CLLSGA IVDQ VCITRWGHFD+E+ FWSR   + EEDS+SASAQ SQF+S+   AVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           QEVVKTMLAMGYVLGKDT TKAKA DESHQVSA AAAKVAD+S+RIGLTDM+GAG+EAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGFEAVK 180

Query: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVV+SSYFS+GALFMSDALNRAAK AADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 242
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Sed0004959 vs. TAIR 10
Match: AT1G14340.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-75
Identity = 152/236 (64.41%), Postives = 181/236 (76.69%), Query Frame = 0


Query: 5   GYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLS 64
           GY VEVTGLSP  T  D++DFF+FSG I+ ++IVRSGE ACTAYV FKD+YSQETA LL+
Sbjct: 6   GYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETAVLLT 65

Query: 65  GATIVDQPVCITRWGHFDEEYDFWSRSS-SYHEEDSSSASAQGSQF-VSTAVTMAQEVVK 124
           GATI+DQ VCITRWG   EE+DFW+ +S  + +E  S   AQ S+F    AVT AQEVVK
Sbjct: 66  GATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQRSEFNAGEAVTKAQEVVK 125

Query: 125 TMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVKTMDEK 184
            MLA G+VLGKD L+KAKA DESH VSA A A+V+ +  RIGLTD I  G EAV+  D++
Sbjct: 126 IMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTDKIFTGLEAVRMTDQR 185

Query: 185 YHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSRG 239
           YHV  T KSA+ ATGRTAAAAA +VV SSYFS GAL++S AL RAAK A+DLG+RG
Sbjct: 186 YHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLSGALERAAKAASDLGTRG 241

[Close]

BLAST of Sed0004959 vs. TAIR 10
Match: AT3G01210.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 203.0 bits (515), Expect = 2.7e-52
Identity = 126/252 (50.00%), Postives = 163/252 (64.68%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           M P GY  +VT LSP+ATEKDV  FF+  G +ELVEI     DA TAYVTF+DAY+ + A
Sbjct: 1   MYPCGYVAQVTNLSPQATEKDVHRFFSHCGIVELVEITGCQGDALTAYVTFRDAYALDMA 60

Query: 61  CLLSGATIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVST---AVTMA 120
            LLSGATIVDQ V I+ +G +  E      ++   EED S    +   F S+   A+T+A
Sbjct: 61  VLLSGATIVDQTVWISVYGVYLHE-----SNNLRQEEDYSVTVTRSDAFASSPGEAITVA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGYEAVK 180
           Q+VV+TMLA GYVL KD + KAKALDES + S++ A K+A++S+ +GLT  I +  E V+
Sbjct: 121 QQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQNIQSSMELVR 180

Query: 181 TMDEKYHVLQTTKSAI-----------SATGRTAAAAADTVVKSSYFSKGALFMSDALNR 239
           + DEKYH    TKSA+           + TG+ AAAAA +VV S YF+ GAL+ SDAL R
Sbjct: 181 SADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYFANGALWFSDALGR 240

[Close]

BLAST of Sed0004959 vs. TAIR 10
Match: AT5G46870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 92/238 (38.66%), Postives = 141/238 (59.24%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           TV+V+ +S +ATE+D+ +FF+FSG I  +E     + +  AYVTFKD    ETA LL+G+
Sbjct: 5   TVKVSNVSLEATERDLKEFFSFSGDIAYLETQSENDGSKLAYVTFKDLQGAETAVLLTGS 64

Query: 67  TIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVSTAVTMAQEVVKTMLA 126
           TIVD  V +T    +    D  +   S  E + SS+  +    V      A++VV  M++
Sbjct: 65  TIVDSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSV---FRKAEDVVSGMIS 124

Query: 127 MGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAG----YEAVKTMDEK 186
            G+VLGKD + KAK+LDE HQ+++ A+A+V     RIG T+ I  G     E VK +D+K
Sbjct: 125 KGFVLGKDAIAKAKSLDEKHQLTSTASARVTSFDKRIGFTEKINTGTTVVSEKVKEVDQK 184

Query: 187 YHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSRGLE 241
           + V + TKSAI+A  +T + A   ++K+ Y   GA +++ A NR +K A ++G +  E
Sbjct: 185 FQVTEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNRVSKAAEEVGQKAKE 239

[Close]

BLAST of Sed0004959 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-36
Identity = 94/239 (39.33%), Postives = 143/239 (59.83%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           TV+V+ +S  AT++D+ +FF+FSG I  +E     E    AYVTFKD    ETA LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  TIVDQPVCITRWGHFDEEYDFWSRS-SSYHEEDSSSASAQGSQFVSTAVTMAQEVVKTML 126
           TIVD  V ++       +Y     + +S   +DS+ +   G     + +  A++VV +ML
Sbjct: 65  TIVDSSVIVS----MAPDYQLSPEALASLEPKDSNKSPKAG----DSVLRKAEDVVSSML 124

Query: 127 AMGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAGY----EAVKTMDE 186
           A G++LGKD + KAK++DE HQ+++ A+AKVA    +IG TD I  G     E V+ +D+
Sbjct: 125 AKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKVREVDQ 184

Query: 187 KYHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSRGLE 241
           KY V + TKSAI+A  +T + A   ++K+ Y   GA +++ A N+ AK A ++G +  E
Sbjct: 185 KYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKE 235

[Close]

BLAST of Sed0004959 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-33
Identity = 91/238 (38.24%), Postives = 136/238 (57.14%), Query Frame = 0


Query: 7   TVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I  S E   +AYVTFK+    ETA LLSGA
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEH--SAYVTFKETQGAETAVLLSGA 66

Query: 67  TIVDQPVCITRWGHFDEEYDFWSRSSSYHEEDSSSASAQGSQFVSTAVTMAQEVVKTMLA 126
           +I DQ V I       E    +S  ++ H E  SS +        + V  A++VV +MLA
Sbjct: 67  SIADQSVII-------ELAPNYSPPAAPHAETQSSGA-------ESVVQKAEDVVSSMLA 126

Query: 127 MGYVLGKDTLTKAKALDESHQVSAMAAAKVADMSNRIGLTDMIGAG----YEAVKTMDEK 186
            G++LGKD + KAKA DE H  ++ A A VA +  +IGL+  + AG     E +K +D+ 
Sbjct: 127 KGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAVDQN 186

Query: 187 YHVLQTTKSAISATGRTAAAAADTVVKSSYFSKGALFMSDALNRAAKFAADLGSRGLE 241
           + V + TKS  +A  +T ++A   V+K+ Y   G  + + A NR A+ A ++G +  E
Sbjct: 187 FQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTKE 228

The following BLAST results are available for this feature:

BLAST of Sed0004959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945905.1	1.2e-113	90.16	binding partner of ACD11 1-like [Cucurbita moschata]	[more]
KAG7013155.1	1.2e-113	90.16	Binding partner of ACD11 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022968306.1	2.6e-113	89.75	binding partner of ACD11 1-like isoform X1 [Cucurbita maxima]	[more]
KAG6574098.1	3.4e-113	89.75	Binding partner of ACD11 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023541311.1	4.5e-113	90.16	binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0004959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	7.6e-31	38.24	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	4.5e-07	25.23	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Sed0004959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2B1	5.7e-114	90.16	binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450009 PE...	[more]
A0A6J1HUH9	1.3e-113	89.75	binding partner of ACD11 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A0A0KSM6	6.5e-110	87.70	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604930 PE=4 SV...	[more]
A0A5D3CVI0	4.2e-109	86.89	Binding partner of ACD11 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BET5	4.2e-109	86.89	binding partner of ACD11 1 OS=Cucumis melo OX=3656 GN=LOC103489100 PE=4 SV=1	[more]

BLAST of Sed0004959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14340.1	1.4e-75	64.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G01210.1	2.7e-52	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G46870.1	1.2e-36	38.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	2.1e-36	39.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	8.3e-33	38.24	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..76 e-value: 0.0027 score: 26.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..68 e-value: 1.6E-5 score: 24.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..75 score: 8.91048
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..78 e-value: 1.6E-7 score: 33.4
None	No IPR available	PANTHER	PTHR32343:SF26	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..239
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..239
IPR034360	Vip1-like, RNA recognition motif, plant	CDD	cd12269	RRM_Vip1_like	coord: 8..76 e-value: 2.29926E-35 score: 118.702
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004959.1	Sed0004959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding