Sed0004947 (gene) Chayote v1

Overview


Name	Sed0004947
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING/U-box superfamily protein
Location	LG07: 5325321 .. 5328167 (+)
RNA-Seq Expression	Sed0004947
Synteny	Sed0004947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGAATCCAGGCTCTGAATCGTCGGCTCGGAAGCTTTGTGAGATTTGTGCGGAGAAAAGAAAGAAAGAAGAAATGTATAGAATGGAGACGTGTTCTCACTCGTTTTGCTGCGATTGTATAATCAAACACGTCTCTGCAAAGATCGCCGATGGCTATTCCTCTGTTTCCTGCCCCAGTTTCAACTGCCCGACTGCCCTACAATTCGATACCTTCTGGTAATTTTTTGTTTCTCCCATTTATCTTTTTTTTTTCTTCTTTCTTAATTTAAGGATATAAAATAAAATTTGAGGCATTTGGTTTTGTAAAGGAATTAAGAGTAAAAATCTTTTTTTAACGTAAATTTAAAATAAATAATTCTATTAAAAATGAGTCATTTTAATTTATTAAAAATAAACTATTAAAAATGAGTGATTTGAAAATAATGAGTTAATAGTTAGAAATAAGGAATTGTTTTTAATAGTAAAAATAAAGGTGTTGAATTGTTATACAATTTTGTTTAGTTGTAATTTTTGAAAGAAGAATTAGTAAACATTCTTCGATCTAAATTATCCTTAAATATGGAAAACAAACACCCCTAATTGAGCAATTTAAAAGCTGTCTTGAACGATAGTAGTTAGGATTTTAAAGGATTCACTAGTAAGTGTGCTGCAATTCAAGTACATAAGGAGTCTGAAAACGATGAGATATATTAAAATCGGATTCAAATATTCTAAAAGTTGAGGACATTTTAGCTCATAAATTAATTGTTTCAATCAAGTGAAATTGATGGAAGCAATTTAGAATGAAGTCAATTGTGTACTAAAAAAAAGACAACTGAAGTTGATCAATTTTTTATTAAAATTTACTATCTACAATAAATTTTCTACTTTTTTTTTTATTAAAGTATTATTTGATTAATGTACTTAAGTTTGTTCCATTTGTCTAAAGAGAGTTTCATTTTAGACGTTACTTTCAAAATATCTCATTATAATTTATGTATTAAATTAACATAAGTTTATTGTTAGTTTTTTAATTAAAAAACTAATATTTCTCTTGAGAAATTTTATAGATAAGGTCACATTGTATTAAAATTTACTGTTAAATTATCATAATGACTAATATTAGACTATATTAAAAATAAAAATTGAGCATTTAAAAGTGAGCAAACCTCACTTCTTTTTTATAACTAATGGACAAACCTCACAAGAAAGTGTTTCAGCTTTTGTTTTCTGAACTCTAACATTATATTATAGTCTATTTAGAGGAACCATTATTTGAGTTTTTGTTAGATTTCGTTCTTTGAAATTACAAATTTCCAATCTTAGTTTATGTGTTTAATTATTCTGGTTTCTTTCTAGTTAATTTTTCTTAAAAAATTTAATCTCAATTTAGTCATGTCAACAATTTTAATACAAAAGTAATAAGACCAACCCTCTTGCTCCAGCTAACAAGAGCAATAGCTAAGTATTAGTATATATCCAATGATTAGAACGATAGATTGTAGCTTGCTCAATATTTGAGTTTACTTAATTCTCTTAGTGTACACCTTAAGCATGGTCCTTAATCTTGTATAGTATTTTCTTTGCTACTGTCTTTTTTTTGCGTAATTGTCGAGTCTGCTTATGTGTACACTGACTATTATCCCTCAACCCTTTTTTCTGTTTTAGCTTAGATCGTTTATGAACGATTGAATGTGAACATACTTATGAAAAGAGCATTTTTTAACTTTTCTTTTTCGACTAAAAAGCAACCAAATTCCAAGAAATATTACTTTGATCAGGAAAAAAAAAGATTTCTTGTTGATTTGTTTGTGCAGTAAAATGGTACCGAAGGCAGTGGCTGAGAAGTGGGACAAAGCGCTTTGCGAAGCGCTTTTTTCCGAAATGGAGAAGGTGTATTGCCCGTTCAAGGACTGCTCTGCGCCCATGATTCTGGAAAAAGATGAACACATAACGGATTGCGAGTGTCCGGATTGCCACCGACTGTTCTGTGCCGCATGCGGGGTGCCTTGGCATGCGGACGCAACCTGCGAGGAATATAAGATTCTGAAAGAAGATGAGAGGGGTAGAGATGACATTTTGATGAACAAACTTGCCTCTAAAATGAAGTGGAGGAGATGCCCTAGCTGCAAGTTCATGGTTGAGAAGATTGATGGTTGCTTGCACATCACTTGCAGGTTTCTTCCTTTCTCTCATACCATATATTTTGTGTGTTTTTAACTTTTCTTAGCATTTATTGACAATTAATTATGATAAGAATTTTTAATCTACGATTAGATTATTACAAATATTGAAGTGTAGGACCAAATTGTTACCTGTTAAAAATTATGGATTAAAATTATTACAAATTTAGAACTATATAGATTAAAATGTTATATTTATGAAGTTATTTGTTAGAATTATGAGTAATGTTTCTAGCTCTTAGTTGTCCTATCTACATATATTATTTCGGGTCGACTACGAAAATAGTTACATCTCAATGCATTGATATTTTTTCTAGATTCTAGAAAAAGAAATATTTTCTTTTTCTAGATTGTAATCTTTAACTATACATATATTCTATATAACTTAGTTCTCAAGAAAGTATATGAATGCTAACTAAGTTTCAAAAATAAAAACAAATTTTTGGTTTGGTTTCTTAAAATATAGGTAAGATGTGGGTATGCAAGCCGAAAAACACAAAATAAAATAGCTATTGTAGGCAATTTTAAAAATAAAAAACTATAAACAAAATGATTATAGAACGGGTCTTTGTGAAATTAATTTTGTGTATTGTTGATGAAATTGTTGTAGGTGTCGATTCCAGTTCTGCTATGCCTGTGGATCACCTTGGTCTTCCACCCATGGTGCCTGCCAACCCTAA

mRNA sequence

ATGTCGTCGAATCCAGGCTCTGAATCGTCGGCTCGGAAGCTTTGTGAGATTTGTGCGGAGAAAAGAAAGAAAGAAGAAATGTATAGAATGGAGACGTGTTCTCACTCGTTTTGCTGCGATTGTATAATCAAACACGTCTCTGCAAAGATCGCCGATGGCTATTCCTCTGTTTCCTGCCCCAGTTTCAACTGCCCGACTGCCCTACAATTCGATACCTTCTGTAAAATGGTACCGAAGGCAGTGGCTGAGAAGTGGGACAAAGCGCTTTGCGAAGCGCTTTTTTCCGAAATGGAGAAGGTGTATTGCCCGTTCAAGGACTGCTCTGCGCCCATGATTCTGGAAAAAGATGAACACATAACGGATTGCGAGTGTCCGGATTGCCACCGACTGTTCTGTGCCGCATGCGGGGTGCCTTGGCATGCGGACGCAACCTGCGAGGAATATAAGATTCTGAAAGAAGATGAGAGGGGTAGAGATGACATTTTGATGAACAAACTTGCCTCTAAAATGAAGTGGAGGAGATGCCCTAGCTGCAAGTTCATGGTTGAGAAGATTGATGGTTGCTTGCACATCACTTGCAGGTGTCGATTCCAGTTCTGCTATGCCTGTGGATCACCTTGGTCTTCCACCCATGGTGCCTGCCAACCCTAA

Coding sequence (CDS)

ATGTCGTCGAATCCAGGCTCTGAATCGTCGGCTCGGAAGCTTTGTGAGATTTGTGCGGAGAAAAGAAAGAAAGAAGAAATGTATAGAATGGAGACGTGTTCTCACTCGTTTTGCTGCGATTGTATAATCAAACACGTCTCTGCAAAGATCGCCGATGGCTATTCCTCTGTTTCCTGCCCCAGTTTCAACTGCCCGACTGCCCTACAATTCGATACCTTCTGTAAAATGGTACCGAAGGCAGTGGCTGAGAAGTGGGACAAAGCGCTTTGCGAAGCGCTTTTTTCCGAAATGGAGAAGGTGTATTGCCCGTTCAAGGACTGCTCTGCGCCCATGATTCTGGAAAAAGATGAACACATAACGGATTGCGAGTGTCCGGATTGCCACCGACTGTTCTGTGCCGCATGCGGGGTGCCTTGGCATGCGGACGCAACCTGCGAGGAATATAAGATTCTGAAAGAAGATGAGAGGGGTAGAGATGACATTTTGATGAACAAACTTGCCTCTAAAATGAAGTGGAGGAGATGCCCTAGCTGCAAGTTCATGGTTGAGAAGATTGATGGTTGCTTGCACATCACTTGCAGGTGTCGATTCCAGTTCTGCTATGCCTGTGGATCACCTTGGTCTTCCACCCATGGTGCCTGCCAACCCTAA

Protein sequence

MSSNPGSESSARKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLHITCRCRFQFCYACGSPWSSTHGACQP

Homology

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BLAST of Sed0004947 vs. NCBI nr
Match: KAA0058684.1 (putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.4e-78
Identity = 130/205 (63.41%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 12  RKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFD 71
           +KLCEIC E +++  M+ ++TC HSFC DC+IKHVS KI DGYSSVSC + NC + + F 
Sbjct: 2   KKLCEICLEYKEEGNMFEIKTCLHSFCRDCVIKHVSTKIGDGYSSVSCLTLNCSSIIDFH 61

Query: 72  TFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLF 131
           +   M+P   AEKW+KALCE ++ E EKV CPFKDCS  MI+E+D  I DCECP CHRLF
Sbjct: 62  SCWTMLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLF 121

Query: 132 CAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLHI 191
           C  C VPWH   TCE+YK L + E GRD+ILM KLAS+MKW +CP C+F VEK+ GCLHI
Sbjct: 122 CGTCRVPWHEGVTCEDYKRLYKYEDGRDEILMKKLASQMKWMKCPKCQFFVEKVSGCLHI 181

Query: 192 TCRCRFQFCYACGSPWSSTHGACQP 217
           TCRCRF+FCYACGS WSSTHG C P
Sbjct: 182 TCRCRFEFCYACGSAWSSTHGGCLP 206

[Close]

BLAST of Sed0004947 vs. NCBI nr
Match: TYK10490.1 (putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 7.1e-78
Identity = 129/205 (62.93%), Postives = 155/205 (75.61%), Query Frame = 0


Query: 12  RKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFD 71
           +KLCEIC E +++  M+ ++TC HSFC DC+IKHVS KI DGYSSVSC + NC + + F 
Sbjct: 2   KKLCEICLEYKEEGNMFEIKTCLHSFCRDCVIKHVSTKIGDGYSSVSCLTLNCSSIIDFH 61

Query: 72  TFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLF 131
           +   M+P   AEKW+KALCE ++ E EKV CPFKDCS  MI+E+D  I DCECP CHRLF
Sbjct: 62  SCWTMLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLF 121

Query: 132 CAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLHI 191
           C  C VPWH   TCE+YK L + E GRD+ILM KLAS+MKW +CP C+  VEK+ GCLHI
Sbjct: 122 CGTCRVPWHEGVTCEDYKRLYKYEEGRDEILMKKLASQMKWMKCPKCQLFVEKVSGCLHI 181

Query: 192 TCRCRFQFCYACGSPWSSTHGACQP 217
           TCRCRF+FCYACGS WSSTHG C P
Sbjct: 182 TCRCRFEFCYACGSAWSSTHGGCLP 206

[Close]

BLAST of Sed0004947 vs. NCBI nr
Match: KAE8646419.1 (hypothetical protein Csa_016113 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 9.6e-75
Identity = 125/190 (65.79%), Postives = 147/190 (77.37%), Query Frame = 0


Query: 27  MYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFCKMVPKAVAEKWD 86
           M+ + TC HSFC DC+IKHVS KI +GYSSVSC + NCP+ + F +  +M+PK + EKW+
Sbjct: 1   MFEINTCLHSFCRDCVIKHVSTKIENGYSSVSCLALNCPSIIDFHSCWRMLPKEIGEKWN 60

Query: 87  KALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLFCAACGVPWHADATCE 146
           KALCE L+S  EKV CPFKDCS  + LE+   I DCECP CHRLFCA C VPWH   TCE
Sbjct: 61  KALCEVLYSTEEKVVCPFKDCSVGITLERGASIRDCECPLCHRLFCATCEVPWHDGVTCE 120

Query: 147 EYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLHITCRCRFQFCYACGSP 206
           EYK L ++E GR++ILM KLAS+MKW +CP C F VEKI GCLHITCRCRF+FCYACGS 
Sbjct: 121 EYKRLYKNEEGRNEILMKKLASQMKWMKCPKCNFFVEKIYGCLHITCRCRFEFCYACGSA 180

Query: 207 WSSTHGACQP 217
           WSSTHG CQP
Sbjct: 181 WSSTHGGCQP 190

[Close]

BLAST of Sed0004947 vs. NCBI nr
Match: PNX98112.1 (putative E3 ubiquitin-protein ligase RNF144A-like protein [Trifolium pratense])

HSP 1 Score: 276.2 bits (705), Expect = 2.5e-70
Identity = 120/211 (56.87%), Postives = 155/211 (73.46%), Query Frame = 0


Query: 7   SESSARKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPT 66
           S SS+  +CEICAE +K EEM+  ++CSHSFC +C+IK V  KI +  ++VSCP  NC  
Sbjct: 82  SSSSSIIICEICAETKKTEEMFNNQSCSHSFCSECVIKQVETKINEKIANVSCPGLNCKG 141

Query: 67  ALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKD--EHITDCEC 126
            L+ ++   ++PK + +KW+ ALCEALF  + K YCPFKDCSA ++ E +  E I + EC
Sbjct: 142 VLELESCISLLPKELIDKWNDALCEALFCSVPKFYCPFKDCSAMLLDENEGVEDIRESEC 201

Query: 127 PDCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEK 186
           P CHRLFCA+C VPWH    CEEY+ L  DERG DD+++ +LA++ +WRRCP+CKF VEK
Sbjct: 202 PFCHRLFCASCHVPWHPGIGCEEYQKLNVDERGSDDLVVRELANQKQWRRCPTCKFYVEK 261

Query: 187 IDGCLHITCRCRFQFCYACGSPWSSTHGACQ 216
             GCLHITCRCRF+FCYACG  WSSTHG CQ
Sbjct: 262 NGGCLHITCRCRFEFCYACGEQWSSTHGGCQ 292

[Close]

BLAST of Sed0004947 vs. NCBI nr
Match: XP_027367068.1 (probable E3 ubiquitin-protein ligase RNF217 [Abrus precatorius])

HSP 1 Score: 275.4 bits (703), Expect = 4.2e-70
Identity = 119/217 (54.84%), Postives = 151/217 (69.59%), Query Frame = 0


Query: 1   MSSNPGSESSARKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCP 60
           M+   G   S+  LCEICAE ++ +EM+R + C HSFC  C+IKHV+ KI D  + VSCP
Sbjct: 98  MTEEAGEPCSSLILCEICAEAKETDEMFRNQRCDHSFCSQCVIKHVATKIQDKITVVSCP 157

Query: 61  SFNCPTALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMIL--EKDEH 120
             NC   L+ D    M+PK + ++W  ALCEALF    K YCPF+DCSA +++  E  + 
Sbjct: 158 GLNCKGVLEVDACMAMLPKELLDRWSDALCEALFLTAHKFYCPFRDCSAMLLVDGEGGKD 217

Query: 121 ITDCECPDCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSC 180
           I + ECP CHRLFCA C VPWHA   CEE++ L EDERGR+D+L+ +  +K KW RCP C
Sbjct: 218 IRESECPFCHRLFCARCYVPWHAGVGCEEFETLNEDERGREDLLVREFINKKKWSRCPQC 277

Query: 181 KFMVEKIDGCLHITCRCRFQFCYACGSPWSSTHGACQ 216
           KF VEK +GCLHITCRC+F+FCYACG  W+STHG CQ
Sbjct: 278 KFFVEKTEGCLHITCRCQFEFCYACGEQWTSTHGGCQ 314

[Close]

BLAST of Sed0004947 vs. ExPASy Swiss-Prot
Match: Q9LVW9 (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI4 PE=5 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 6.6e-18
Identity = 62/202 (30.69%), Postives = 97/202 (48.02%), Query Frame = 0


Query: 15  CEICAEK-RKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSS-VSCPSFNCPTALQFDT 74
           C+IC E+   K  M RME C H FC DC  +H + +I +G    + C ++ C T    D 
Sbjct: 119 CDICMEEDLSKYAMTRME-CGHRFCNDCWKEHFTVRINEGEGKRIRCMAYKCNTIC--DE 178

Query: 75  FCKMVPKAVAEKWDKALCEALFSEMEKV-YCPFKDCSAPMI--LEKDEHITDCECPDCHR 134
             ++V   +AEK+D+ L E+   +   V +CP        I  ++ D  + + EC  C  
Sbjct: 179 ARQLVSTELAEKFDRFLIESYVEDNNMVKWCPSTPHCGNAIRNIKDDGDVDEVEC-SCGL 238

Query: 135 LFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCL 194
            FC +C    H+  +C  +K+ K+      +  +N +    K   CP C   ++K DGC 
Sbjct: 239 QFCFSCLSESHSPCSCLMWKLWKKKCEDESE-TVNWMTVNTK--LCPKCSKPIQKRDGCN 298

Query: 195 HITCRCRFQFCYACGSPWSSTH 212
           H+TC+C   FC+ CG      H
Sbjct: 299 HMTCKCGQHFCWLCGQATGRDH 313

[Close]

BLAST of Sed0004947 vs. ExPASy Swiss-Prot
Match: Q54CX4 (Uncharacterized protein DDB_G0292642 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0292642 PE=4 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 6.6e-18
Identity = 62/209 (29.67%), Postives = 92/209 (44.02%), Query Frame = 0


Query: 15  CEIC-AEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADG-YSSVSCPSFNCPTALQFDT 74
           C+IC  E  +  E++ +E C H +C DCI +H+   I +G    +SCP   C   ++   
Sbjct: 616 CKICYMEYDQSNEVFTLE-CDHVYCFDCITEHLRILITEGRVLDISCPHPQCKKEIKESE 675

Query: 75  FCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLFC 134
              +  +    K+ K    A        +CP  DC  P +    E      CP C   FC
Sbjct: 676 IYMLTNEKNWLKYQKFSMIASLKTEPIKWCPTPDCDTP-VRGGSERNPILNCPKCSNDFC 735

Query: 135 AACGVPWHADATC---------EEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVE 194
             CG   H  A C          + K ++       D L    ++K   + CP+CK  +E
Sbjct: 736 WICGEYSHEGAKCGTEAMELQGRKNKSIESAATAYIDFLE---SNKHFVKPCPTCKSHIE 795

Query: 195 KIDGCLHITC-RCRFQFCYACGSPWSSTH 212
           K DGC H+TC  C+ QFC+ C +P+ S H
Sbjct: 796 KHDGCNHMTCINCQHQFCWLCMNPYQSGH 819

[Close]

BLAST of Sed0004947 vs. ExPASy Swiss-Prot
Match: Q9LVX0 (Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana OX=3702 GN=ARI3 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 57/201 (28.36%), Postives = 92/201 (45.77%), Query Frame = 0


Query: 15  CEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSS-VSCPSFNCPTALQFDTF 74
           C++C E      +     C H FC DC I H + KI +G S  + C +  C      D  
Sbjct: 121 CDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHECKAICDEDVV 180

Query: 75  CKMVPKAVAEKWDKALCEALFSEMEKV-YCPFK-DCSAPMILEKDEH-ITDCECPDCHRL 134
            K+V   +A+++D+ L E+   +   V +CP K  C + +   +D H + +  C  C   
Sbjct: 181 RKLVSPELADRYDRFLIESYVEDNNMVKWCPSKPHCGSAIRKIEDGHDVVEVGC-SCGLQ 240

Query: 135 FCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLH 194
           FC +C    H+  +C  +K+ K+      +  +N +    K   CP C   ++K DGC  
Sbjct: 241 FCFSCLSESHSPCSCLMWKLWKKKCEDESE-TVNWITVNTK--LCPKCSKPIQKRDGCNL 300

Query: 195 ITCRCRFQFCYACGSPWSSTH 212
           +TC+C   FC+ CG      H
Sbjct: 301 MTCKCGQHFCWLCGQATGRDH 317

[Close]

BLAST of Sed0004947 vs. ExPASy Swiss-Prot
Match: Q4KLT0 (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.5e-17
Identity = 53/205 (25.85%), Postives = 89/205 (43.41%), Query Frame = 0


Query: 15  CEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFC 74
           C +C E R    +  +  C    C +C+ +++S+++  G + + CP   C   L   T  
Sbjct: 3   CRVCLEDR---SIKPLPCCKKPVCDECLKRYLSSQVQLGQAEIQCPITECNKHLDESTIL 62

Query: 75  KMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITD---------CECP 134
             +P     K+   L     S M+    P   C      ++  HI +          +CP
Sbjct: 63  YSLPHDDIIKYKYFL---ELSRMDSSTKPCPQCKHFTTFKRKTHIPNPTKSENKLKIQCP 122

Query: 135 DCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKW-----RRCPSCKF 194
            C  ++C  C  PWH    C EYK        + D L+   A++++      ++CP CK 
Sbjct: 123 SCQFIWCFRCHAPWHEGVNCREYK--------KGDKLLRHWANEIEHGQRNAQKCPRCKV 182

Query: 195 MVEKIDGCLHITC-RCRFQFCYACG 205
            +++ +GC H+TC +C   FCY CG
Sbjct: 183 HIQRTEGCDHMTCSQCNTNFCYRCG 193

[Close]

BLAST of Sed0004947 vs. ExPASy Swiss-Prot
Match: Q9P3U4 (E3 ubiquitin-protein ligase dbl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dbl4 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.6e-17
Identity = 52/204 (25.49%), Postives = 94/204 (46.08%), Query Frame = 0


Query: 15  CEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFC 74
           CEIC ++      +    C H FC  C  +++ ++I++G S + CP  +C   +   +  
Sbjct: 131 CEICYDEGCLP--FFSAECDHEFCLACYRQYLDSRISEGESVIQCPEESCTQIVSIQSIT 190

Query: 75  KMVPKAVAEKWDKALCEALFSEMEKV-YCPFKDCSAPMILEKDEHITDCECP----DCHR 134
           K++ +   +++ + L  +   + + + +CP  DC   +     +       P    +C +
Sbjct: 191 KVLDEKSLDRYHRLLDRSFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCNCGK 250

Query: 135 LFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCL 194
            FC  CG   H    C   KI  +  +  D    N + +  K   CP C   +EK  GC 
Sbjct: 251 QFCFGCGHDNHQPTICPLVKIWLQKCQD-DSETANWIHANTK--ECPKCSTTIEKNGGCN 310

Query: 195 HITC-RCRFQFCYACGSPWSSTHG 213
           H+TC +C+++FC+ C  PW+  HG
Sbjct: 311 HMTCKKCKYEFCWVCLGPWTE-HG 328

[Close]

BLAST of Sed0004947 vs. ExPASy TrEMBL
Match: A0A5A7UU31 (Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G001540 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.2e-78
Identity = 130/205 (63.41%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 12  RKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFD 71
           +KLCEIC E +++  M+ ++TC HSFC DC+IKHVS KI DGYSSVSC + NC + + F 
Sbjct: 2   KKLCEICLEYKEEGNMFEIKTCLHSFCRDCVIKHVSTKIGDGYSSVSCLTLNCSSIIDFH 61

Query: 72  TFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLF 131
           +   M+P   AEKW+KALCE ++ E EKV CPFKDCS  MI+E+D  I DCECP CHRLF
Sbjct: 62  SCWTMLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLF 121

Query: 132 CAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLHI 191
           C  C VPWH   TCE+YK L + E GRD+ILM KLAS+MKW +CP C+F VEK+ GCLHI
Sbjct: 122 CGTCRVPWHEGVTCEDYKRLYKYEDGRDEILMKKLASQMKWMKCPKCQFFVEKVSGCLHI 181

Query: 192 TCRCRFQFCYACGSPWSSTHGACQP 217
           TCRCRF+FCYACGS WSSTHG C P
Sbjct: 182 TCRCRFEFCYACGSAWSSTHGGCLP 206

[Close]

BLAST of Sed0004947 vs. ExPASy TrEMBL
Match: A0A5D3CGK1 (Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001400 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.4e-78
Identity = 129/205 (62.93%), Postives = 155/205 (75.61%), Query Frame = 0


Query: 12  RKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFD 71
           +KLCEIC E +++  M+ ++TC HSFC DC+IKHVS KI DGYSSVSC + NC + + F 
Sbjct: 2   KKLCEICLEYKEEGNMFEIKTCLHSFCRDCVIKHVSTKIGDGYSSVSCLTLNCSSIIDFH 61

Query: 72  TFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPDCHRLF 131
           +   M+P   AEKW+KALCE ++ E EKV CPFKDCS  MI+E+D  I DCECP CHRLF
Sbjct: 62  SCWTMLPNETAEKWNKALCEVVYREEEKVVCPFKDCSVGMIVERDAKIRDCECPLCHRLF 121

Query: 132 CAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGCLHI 191
           C  C VPWH   TCE+YK L + E GRD+ILM KLAS+MKW +CP C+  VEK+ GCLHI
Sbjct: 122 CGTCRVPWHEGVTCEDYKRLYKYEEGRDEILMKKLASQMKWMKCPKCQLFVEKVSGCLHI 181

Query: 192 TCRCRFQFCYACGSPWSSTHGACQP 217
           TCRCRF+FCYACGS WSSTHG C P
Sbjct: 182 TCRCRFEFCYACGSAWSSTHGGCLP 206

[Close]

BLAST of Sed0004947 vs. ExPASy TrEMBL
Match: A0A2K3N511 (Putative E3 ubiquitin-protein ligase RNF144A-like protein OS=Trifolium pratense OX=57577 GN=L195_g021354 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.2e-70
Identity = 120/211 (56.87%), Postives = 155/211 (73.46%), Query Frame = 0


Query: 7   SESSARKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPT 66
           S SS+  +CEICAE +K EEM+  ++CSHSFC +C+IK V  KI +  ++VSCP  NC  
Sbjct: 82  SSSSSIIICEICAETKKTEEMFNNQSCSHSFCSECVIKQVETKINEKIANVSCPGLNCKG 141

Query: 67  ALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKD--EHITDCEC 126
            L+ ++   ++PK + +KW+ ALCEALF  + K YCPFKDCSA ++ E +  E I + EC
Sbjct: 142 VLELESCISLLPKELIDKWNDALCEALFCSVPKFYCPFKDCSAMLLDENEGVEDIRESEC 201

Query: 127 PDCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEK 186
           P CHRLFCA+C VPWH    CEEY+ L  DERG DD+++ +LA++ +WRRCP+CKF VEK
Sbjct: 202 PFCHRLFCASCHVPWHPGIGCEEYQKLNVDERGSDDLVVRELANQKQWRRCPTCKFYVEK 261

Query: 187 IDGCLHITCRCRFQFCYACGSPWSSTHGACQ 216
             GCLHITCRCRF+FCYACG  WSSTHG CQ
Sbjct: 262 NGGCLHITCRCRFEFCYACGEQWSSTHGGCQ 292

[Close]

BLAST of Sed0004947 vs. ExPASy TrEMBL
Match: A0A6J1CX43 (probable E3 ubiquitin-protein ligase RNF217 OS=Momordica charantia OX=3673 GN=LOC111015371 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 2.6e-70
Identity = 130/215 (60.47%), Postives = 156/215 (72.56%), Query Frame = 0


Query: 7   SESSARKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPT 66
           S  S+R+LCEIC E++  + M+ +E C HSFC  C+IKHV+AKI  G S VSCPS +C  
Sbjct: 29  SSRSSRQLCEICLERKAIDNMFTIEACLHSFCRKCVIKHVAAKINGGSSRVSCPSLDCSR 88

Query: 67  ALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMI-LEK--DEHITDCE 126
            ++F+T   M+PK VAEKWD+ALCEALF E EKV CPFKDCSA M+ LEK     I + E
Sbjct: 89  FVEFETCWGMLPKRVAEKWDRALCEALFVEAEKVMCPFKDCSAAMVNLEKGRSADILESE 148

Query: 127 CPDCHRLFCAACGVPWHADATCEEYKILKED-ERGR--DDILMNKLASKMKWRRCPSCKF 186
           CP CHRLFCA C VPWHA  TCEEY+  K+  +RGR  DD L+  +A KM+W RCP CKF
Sbjct: 149 CPICHRLFCAKCRVPWHARVTCEEYQRQKKSKKRGREDDDALLKDMARKMEWMRCPRCKF 208

Query: 187 MVEKIDGCLHITCRCRFQFCYACGSPWSSTHGACQ 216
            VEK  GCLHITCRC+F+FCYACGS WS  HG C+
Sbjct: 209 FVEKTYGCLHITCRCKFEFCYACGSQWSHNHGGCR 243

[Close]

BLAST of Sed0004947 vs. ExPASy TrEMBL
Match: A0A5B6ZBQ4 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_011173 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.9e-69
Identity = 115/209 (55.02%), Postives = 155/209 (74.16%), Query Frame = 0


Query: 8   ESSARKLCEICAEKRKKEEMYRMETCS-HSFCCDCIIKHVSAKIADGYSSVSCPSFNCPT 67
           ES++   CEICAE+R+ EEM+R  +C+ HS+C DCI KHV+ KI +    V+CPS NC  
Sbjct: 101 ESASHSFCEICAEQRESEEMFRNGSCNHHSYCNDCIGKHVATKIQENIKIVTCPSLNCKG 160

Query: 68  ALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCECPD 127
            L+ DT   M+PK V  +WD+ALCE+L    +K+YCPF+DCSA ++ +  E I + ECP 
Sbjct: 161 VLELDTCRAMIPKEVLARWDEALCESLILASQKIYCPFRDCSAMLVNDGVEVIRESECPI 220

Query: 128 CHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKID 187
           C RLFCA C VPWH+   CEE++IL EDE+GR+D+++ +LA    W RCP+CKF+VEK +
Sbjct: 221 CRRLFCAQCDVPWHSGVECEEFQILNEDEKGREDLMVRELARDKHWMRCPNCKFIVEKSE 280

Query: 188 GCLHITCRCRFQFCYACGSPWSSTHGACQ 216
           GCLH+TCRC+FQFCY CG+ WS+THG+CQ
Sbjct: 281 GCLHMTCRCQFQFCYQCGATWSNTHGSCQ 309

[Close]

BLAST of Sed0004947 vs. TAIR 10
Match: AT3G14250.1 (RING/U-box superfamily protein )

HSP 1 Score: 218.8 bits (556), Expect = 4.3e-57
Identity = 95/211 (45.02%), Postives = 138/211 (65.40%), Query Frame = 0


Query: 11  ARKLCEICAEKRKKEEMYRMET-CSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQ 70
           +R+LC IC +++   +++R  T C+H++C DC +++V+ KI +  S + CP   C   ++
Sbjct: 91  SRRLCMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENASRIKCPDVECTRLIE 150

Query: 71  FDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEK--DEHITDCECPDC 130
             T   ++PK V ++W+K LCE+L S  +K YCPFKDCSA M+  +  D ++T  EC  C
Sbjct: 151 PYTCRDLIPKDVFDRWEKILCESLISSWDKFYCPFKDCSAMMVNNENGDANVTQTECRSC 210

Query: 131 HRLFCAACGVPWHADATCEEYKIL---KEDERGRDDILMNKLASKMKWRRCPSCKFMVEK 190
           HRLFC  C V WHA   C+E++     K+     DD L+ ++A   +WRRCPSCKF V+K
Sbjct: 211 HRLFCVQCKVTWHAGIGCDEFQRFGNTKKKSSDEDDALLIQMAKNKQWRRCPSCKFYVDK 270

Query: 191 IDGCLHITCRCRFQFCYACGSPWSSTHGACQ 216
           ++GC HI CRC +QFCY CGS WSS+H ACQ
Sbjct: 271 VEGCQHIKCRCGYQFCYGCGSVWSSSH-ACQ 300

[Close]

BLAST of Sed0004947 vs. TAIR 10
Match: AT3G53690.1 (RING/U-box superfamily protein )

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-56
Identity = 94/201 (46.77%), Postives = 131/201 (65.17%), Query Frame = 0


Query: 7   SESSARKLCEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPT 66
           S  +A   CEIC + +   E +R+  CSH +C DC+ K+++AK+ D   S+ CP   C  
Sbjct: 107 SSKTATFDCEICVDSKSIIESFRIGGCSHFYCNDCVSKYIAAKLQDNILSIECPVSGCSG 166

Query: 67  ALQFDTFCKMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDE-HITDCECP 126
            L+ D   +++PK V ++W  ALCEA+    +K YCP+KDCSA + LE+ E  + D ECP
Sbjct: 167 RLEPDQCRQILPKEVFDRWGDALCEAVVMRSKKFYCPYKDCSALVFLEESEVKMKDSECP 226

Query: 127 DCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKI 186
            CHR+ C  CG  WH + TCEE++ L  +ERGRDDIL+  +A + KW+RCPSCKF +EK 
Sbjct: 227 HCHRMVCVECGTQWHPEMTCEEFQKLAANERGRDDILLATMAKQKKWKRCPSCKFYIEKS 286

Query: 187 DGCLHITCRCRFQFCYACGSP 207
            GCL++ CRC   FCY CG+P
Sbjct: 287 QGCLYMKCRCGLAFCYNCGTP 307

[Close]

BLAST of Sed0004947 vs. TAIR 10
Match: AT5G37560.1 (RING/U-box superfamily protein )

HSP 1 Score: 154.8 bits (390), Expect = 7.7e-38
Identity = 74/208 (35.58%), Postives = 111/208 (53.37%), Query Frame = 0


Query: 15  CEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFC 74
           C IC++K   E M   + C H  C  C+ + V  K+  G     C    C + L  ++  
Sbjct: 181 CSICSDKTDAEHMLLNDKCLHRHCFSCVKQQVKVKLRSGIVP-PCLEDGCKSELTLESCS 240

Query: 75  KMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITDCE------CPDCH 134
            ++   + E W + + E L  + EK+YCP++ CS  M++ K E   + E      C  C 
Sbjct: 241 MVLTPKLIEMWKRKMEEDLIPDAEKIYCPYRSCS--MLMSKTELSREAEQSNVRACIKCS 300

Query: 135 RLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSCKFMVEKIDGC 194
            LFC  C VPWH+D +C +YK +   ER  +D+++  LA+   WR+C  CK M+E  +GC
Sbjct: 301 ELFCIDCKVPWHSDLSCADYKRI-HSERLVNDMMLKVLANDQMWRQCSECKHMIELTEGC 360

Query: 195 LHITCRCRFQFCYACGSPWSSTHG-ACQ 216
            HITCRC ++FCY CG  W+  H  +CQ
Sbjct: 361 NHITCRCGYEFCYRCGHKWTKYHHYSCQ 384

[Close]

BLAST of Sed0004947 vs. TAIR 10
Match: AT4G19670.1 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-37
Identity = 74/216 (34.26%), Postives = 108/216 (50.00%), Query Frame = 0


Query: 15  CEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFC 74
           C IC E R+ E M  ++ C+H FC  C+  +V  K+      + CP   C   L      
Sbjct: 207 CSICCEDRQSEMMLSLK-CTHKFCSHCMKTYVEGKVKTSEVPIRCPQVQCKHYLSAAECK 266

Query: 75  KMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITD------------- 134
             +P    + +++A          K+YCP+ +CS   +L+  E ++              
Sbjct: 267 SFLPVTTFKSFEEA--NVCSKNNGKIYCPYPNCS--FLLDPQECLSSGRASSSSSTQSEN 326

Query: 135 ---CECPDCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSC 194
               ECP C R  C  CGVPWHA  +CEE++IL  DER  DDI +++LA   +WRRC  C
Sbjct: 327 SCCVECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPDDITLHRLARYKRWRRCQQC 386

Query: 195 KFMVEKIDGCLHITCRCRFQFCYACGSPWSSTHGAC 215
           + M+E   GC H+TCRC  +FCY+CG+ +      C
Sbjct: 387 RIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTC 417

[Close]

BLAST of Sed0004947 vs. TAIR 10
Match: AT4G19670.2 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-37
Identity = 74/216 (34.26%), Postives = 108/216 (50.00%), Query Frame = 0


Query: 15  CEICAEKRKKEEMYRMETCSHSFCCDCIIKHVSAKIADGYSSVSCPSFNCPTALQFDTFC 74
           C IC E R+ E M  ++ C+H FC  C+  +V  K+      + CP   C   L      
Sbjct: 207 CSICCEDRQSEMMLSLK-CTHKFCSHCMKTYVEGKVKTSEVPIRCPQVQCKHYLSAAECK 266

Query: 75  KMVPKAVAEKWDKALCEALFSEMEKVYCPFKDCSAPMILEKDEHITD------------- 134
             +P    + +++A          K+YCP+ +CS   +L+  E ++              
Sbjct: 267 SFLPVTTFKSFEEA--NVCSKNNGKIYCPYPNCS--FLLDPQECLSSGRASSSSSTQSEN 326

Query: 135 ---CECPDCHRLFCAACGVPWHADATCEEYKILKEDERGRDDILMNKLASKMKWRRCPSC 194
               ECP C R  C  CGVPWHA  +CEE++IL  DER  DDI +++LA   +WRRC  C
Sbjct: 327 SCCVECPVCERFVCVDCGVPWHASMSCEEFQILPVDERYPDDITLHRLARYKRWRRCQQC 386

Query: 195 KFMVEKIDGCLHITCRCRFQFCYACGSPWSSTHGAC 215
           + M+E   GC H+TCRC  +FCY+CG+ +      C
Sbjct: 387 RIMIELAQGCNHMTCRCGHEFCYSCGAEYREGQQTC 417

The following BLAST results are available for this feature:

BLAST of Sed0004947 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058684.1	2.4e-78	63.41	putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]	[more]
TYK10490.1	7.1e-78	62.93	putative E3 ubiquitin-protein ligase RNF217 [Cucumis melo var. makuwa]	[more]
KAE8646419.1	9.6e-75	65.79	hypothetical protein Csa_016113 [Cucumis sativus]	[more]
PNX98112.1	2.5e-70	56.87	putative E3 ubiquitin-protein ligase RNF144A-like protein [Trifolium pratense]	[more]
XP_027367068.1	4.2e-70	54.84	probable E3 ubiquitin-protein ligase RNF217 [Abrus precatorius]	[more]

BLAST of Sed0004947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVW9	6.6e-18	30.69	Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana OX=3702 GN=ARI...	[more]
Q54CX4	6.6e-18	29.67	Uncharacterized protein DDB_G0292642 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]
Q9LVX0	1.1e-17	28.36	Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana OX=3702 GN=ARI...	[more]
Q4KLT0	2.5e-17	25.85	Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 ...	[more]
Q9P3U4	5.6e-17	25.49	E3 ubiquitin-protein ligase dbl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of Sed0004947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UU31	1.2e-78	63.41	Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3CGK1	3.4e-78	62.93	Putative E3 ubiquitin-protein ligase RNF217 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A2K3N511	1.2e-70	56.87	Putative E3 ubiquitin-protein ligase RNF144A-like protein OS=Trifolium pratense ...	[more]
A0A6J1CX43	2.6e-70	60.47	probable E3 ubiquitin-protein ligase RNF217 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5B6ZBQ4	2.9e-69	55.02	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_011173 PE=3 SV=1	[more]

BLAST of Sed0004947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14250.1	4.3e-57	45.02	RING/U-box superfamily protein	[more]
AT3G53690.1	1.3e-56	46.77	RING/U-box superfamily protein	[more]
AT5G37560.1	7.7e-38	35.58	RING/U-box superfamily protein	[more]
AT4G19670.1	2.2e-37	34.26	RING/U-box superfamily protein	[more]
AT4G19670.2	2.2e-37	34.26	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002867	IBR domain	SMART	SM00647	ibrneu5	coord: 155..214 e-value: 4.9E-4 score: 29.4 coord: 83..145 e-value: 1.3E-13 score: 61.2
IPR002867	IBR domain	PFAM	PF01485	IBR	coord: 84..145 e-value: 8.1E-11 score: 42.0 coord: 164..212 e-value: 3.7E-9 score: 36.7
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 15..60 e-value: 6.8E-5 score: 22.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 8..96 e-value: 4.8E-18 score: 66.9
None	No IPR available	GENE3D	1.20.120.1750		coord: 142..215 e-value: 9.9E-19 score: 70.2
None	No IPR available	PANTHER	PTHR11685:SF350	RBR-TYPE E3 UBIQUITIN TRANSFERASE	coord: 13..207
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 85..149
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 12..97
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 156..214
IPR031127	E3 ubiquitin ligase RBR family	PANTHER	PTHR11685	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	coord: 13..207
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 33..42
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 15..60 score: 10.143551
IPR044066	TRIAD supradomain	PROSITE	PS51873	TRIAD	coord: 11..216 score: 27.780682

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004947.1	Sed0004947.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000151	ubiquitin ligase complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0031624	ubiquitin conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity