Sed0004872 (gene) Chayote v1

Overview


Name	Sed0004872
Type	gene
Organism	Sechium edule (Chayote v1)
Description	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Location	LG10: 4241427 .. 4241905 (-)
RNA-Seq Expression	Sed0004872
Synteny	Sed0004872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACAAACCCATATACTCCATCCCAAATCACCATATATATAGAACATTAGGTTCAAAGCTTTTTGTCAAGCTTCTTTCTTTCTTTCTTACTCAATCTTACATTTCTTTTTTTTTACTCTCTTTCCCTATAATGATGAAGACAACTCAAACACTTTCCAAACTTTGTGTTATGATTCTTTTTTTGATTTTATGTTTAAGTCGTGAGAGTATTTACGTAGAATGTCGACATCTCAAGTCTTCGAGATGCAAAAAATGCTCGAAATTTATCGGTTCGACGCCGGTTGCTGTTGCGGCCGCCCATGCGGGCTTCGGCGGAAATCAACAAGTGAAGACGAGCAAGGCAGAACAACCTGAAGAATTTCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCACCATATTAACACCTGAAAAAGCTTCTGATTTCTGTGTGCTAAATTTTAGTTCATATGCATTTCATTGTTTTCCCTCTCG

mRNA sequence

ATAACAAACCCATATACTCCATCCCAAATCACCATATATATAGAACATTAGGTTCAAAGCTTTTTGTCAAGCTTCTTTCTTTCTTTCTTACTCAATCTTACATTTCTTTTTTTTTACTCTCTTTCCCTATAATGATGAAGACAACTCAAACACTTTCCAAACTTTGTGTTATGATTCTTTTTTTGATTTTATGTTTAAGTCGTGAGAGTATTTACGTAGAATGTCGACATCTCAAGTCTTCGAGATGCAAAAAATGCTCGAAATTTATCGGTTCGACGCCGGTTGCTGTTGCGGCCGCCCATGCGGGCTTCGGCGGAAATCAACAAGTGAAGACGAGCAAGGCAGAACAACCTGAAGAATTTCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCACCATATTAACACCTGAAAAAGCTTCTGATTTCTGTGTGCTAAATTTTAGTTCATATGCATTTCATTGTTTTCCCTCTCG

Coding sequence (CDS)

ATGATGAAGACAACTCAAACACTTTCCAAACTTTGTGTTATGATTCTTTTTTTGATTTTATGTTTAAGTCGTGAGAGTATTTACGTAGAATGTCGACATCTCAAGTCTTCGAGATGCAAAAAATGCTCGAAATTTATCGGTTCGACGCCGGTTGCTGTTGCGGCCGCCCATGCGGGCTTCGGCGGAAATCAACAAGTGAAGACGAGCAAGGCAGAACAACCTGAAGAATTTCGTCCCACATCGCCTGGGCACAGTCCTGGAGTTGGCCACCATATTAACACCTGA

Protein sequence

MMKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHINT

Homology

[Close]

BLAST of Sed0004872 vs. NCBI nr
Match: KAG6595044.1 (hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-26
Identity = 68/98 (69.39%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 2  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHA--- 61
          MKTTQ LS +CV ILFLILCLS E +YVECRHLKSSRCKKC+KFI    V +    A   
Sbjct: 1  MKTTQRLSGVCVFILFLILCLSHEVVYVECRHLKSSRCKKCTKFINPPAVNLGGKKADPG 60

Query: 62 --GFGGN-QQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
            G  GN Q+ KTSKAEQP++FRPTSPGHSPGVGHHIN
Sbjct: 61 DVGLAGNRQEFKTSKAEQPQDFRPTSPGHSPGVGHHIN 98

[Close]

BLAST of Sed0004872 vs. NCBI nr
Match: KAE8647497.1 (hypothetical protein Csa_004238, partial [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MMKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSR-CKKCSKFIGSTPVAVAAAHAG 60
          MMK       +C++I+ L+LCLS E +YVECRHLKSSR CKKCSK IG++P    A    
Sbjct: 6  MMKRNGRACGVCIIIV-LVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKS 65

Query: 61 FGGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
           G  QQ  T KAE P++FRPTSPGHSPGVGHHIN
Sbjct: 66 AGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHIN 98

[Close]

BLAST of Sed0004872 vs. NCBI nr
Match: KAG5241395.1 (encoded peptide [Salix suchowensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 2  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFG 61
          M TT+ +   CV++ FLILC  RE++ VE R LKS  C+KCS    ++       + G  
Sbjct: 1  MATTRAIMVACVVLFFLILC--REAVRVEGRPLKSELCEKCSTNNDNSVNVPENGNHGLA 60

Query: 62 GNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
            Q+ KTSK    E+FRPT PGHSPGVGH +N
Sbjct: 61 VGQE-KTSKVNYVEDFRPTEPGHSPGVGHSVN 89

[Close]

BLAST of Sed0004872 vs. NCBI nr
Match: EOX91365.1 (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 71.6 bits (174), Expect = 4.0e-09
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8  LSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSK---FIGSTPVAVAAAHAGFGGNQ 67
          L  +CV++L LILC       VE RHL+S  CKKCS+      +  +    +H+  G  Q
Sbjct: 6  LKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTGSGQ 65

Query: 68 QVKTSKAEQPEEFRPTSPGHSPGVGHHI 93
          + +TSKAE  ++FRPTSPGHSPGVGH I
Sbjct: 66 E-QTSKAENIDDFRPTSPGHSPGVGHSI 92

[Close]

BLAST of Sed0004872 vs. NCBI nr
Match: PNT27018.1 (hypothetical protein POPTR_007G041400 [Populus trichocarpa])

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 2  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKS-SRCKKCSKFIGSTPVAVAAAHAGF 61
          M TT+ ++  C+++ FLILC   E ++VE R LKS   CKKCS    ++       + G 
Sbjct: 1  MATTRVITGACIVLFFLILC--HEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGL 60

Query: 62 GGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
             Q+ +TSK +  ++FRPT PGHSPGVGH +N
Sbjct: 61 AAGQE-QTSKVKYVDDFRPTEPGHSPGVGHSVN 90

[Close]

BLAST of Sed0004872 vs. ExPASy Swiss-Prot
Match: P0DN97 (Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.2e-05
Identity = 31/83 (37.35%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 12 CVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGF---GGNQQVKT 71
          C+ +L + + +S E I  E RHL++ R     K I ++ + V     G    GG+ +   
Sbjct: 10 CISLLIIAILVSHEIIPTEARHLRTHR-----KSIKNSTLTVHEGAGGLRTGGGSVKTDI 69

Query: 72 SKAEQ-PEEFRPTSPGHSPGVGH 91
          SK E   +EFRPT+PG+SPG+GH
Sbjct: 70 SKEEHGVDEFRPTTPGNSPGIGH 87

[Close]

BLAST of Sed0004872 vs. ExPASy TrEMBL
Match: A0A0A0KGB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 47/70 (67.14%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 25 ESIYVECRHLKSSR-CKKCSKFIGSTPVAVAAAHAGFGGNQQVKTSKAEQPEEFRPTSPG 84
          E +YVECRHLKSSR CKKCSK IG++P    A     G  QQ  T KAE P++FRPTSPG
Sbjct: 8  EGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPG 67

Query: 85 HSPGVGHHIN 94
          HSPGVGHHIN
Sbjct: 68 HSPGVGHHIN 77

[Close]

BLAST of Sed0004872 vs. ExPASy TrEMBL
Match: A0A6N2MKA4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143385 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 2  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFG 61
          M TT+ +   CV++ FLILC  RE++ VE R LKS  CK+CS    ++       + G  
Sbjct: 1  MATTRVIMVACVVLFFLILC--REAVRVEGRPLKSELCKECSTNNDNSVNVPENGNHGLA 60

Query: 62 GNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
            Q+ KTSK    E+FRPT PGHSPGVGH +N
Sbjct: 61 DGQE-KTSKVNYVEDFRPTEPGHSPGVGHSVN 89

[Close]

BLAST of Sed0004872 vs. ExPASy TrEMBL
Match: A0A6N2KZU9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143349 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.1e-10
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 2  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSKFIGSTPVAVAAAHAGFG 61
          M TT+ +   CV++ FLILC  RE++ VE R LKS  C+KCS    ++       + G  
Sbjct: 1  MATTRVIMVACVVLFFLILC--REAVRVEGRPLKSELCEKCSTNNDNSVNVPENGNHGLA 60

Query: 62 GNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
            Q+ KTSK    E+FRPT PGHSPGVGH +N
Sbjct: 61 DGQE-KTSKVNYVEDFRPTEPGHSPGVGHSVN 89

[Close]

BLAST of Sed0004872 vs. ExPASy TrEMBL
Match: A0A061DGB8 (tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao OX=3641 GN=TCM_000584 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-09
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 8  LSKLCVMILFLILCLSRESIYVECRHLKSSRCKKCSK---FIGSTPVAVAAAHAGFGGNQ 67
          L  +CV++L LILC       VE RHL+S  CKKCS+      +  +    +H+  G  Q
Sbjct: 6  LKNVCVLLLVLILCQEIFVYNVEGRHLRSKSCKKCSRQRADQNTLKMTKNGSHSSTGSGQ 65

Query: 68 QVKTSKAEQPEEFRPTSPGHSPGVGHHI 93
          + +TSKAE  ++FRPTSPGHSPGVGH I
Sbjct: 66 E-QTSKAENIDDFRPTSPGHSPGVGHSI 92

[Close]

BLAST of Sed0004872 vs. ExPASy TrEMBL
Match: A0A2K1ZP13 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041400 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.8e-08
Identity = 40/93 (43.01%), Postives = 57/93 (61.29%), Query Frame = 0


Query: 2  MKTTQTLSKLCVMILFLILCLSRESIYVECRHLKS-SRCKKCSKFIGSTPVAVAAAHAGF 61
          M TT+ ++  C+++ FLILC   E ++VE R LKS   CKKCS    ++       + G 
Sbjct: 1  MATTRVITGACIVLFFLILC--HEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGL 60

Query: 62 GGNQQVKTSKAEQPEEFRPTSPGHSPGVGHHIN 94
             Q+ +TSK +  ++FRPT PGHSPGVGH +N
Sbjct: 61 AAGQE-QTSKVKYVDDFRPTEPGHSPGVGHSVN 90

The following BLAST results are available for this feature:

BLAST of Sed0004872 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595044.1	2.8e-26	69.39	hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8647497.1	4.3e-19	60.64	hypothetical protein Csa_004238, partial [Cucumis sativus]	[more]
KAG5241395.1	1.8e-09	46.74	encoded peptide [Salix suchowensis]	[more]
EOX91365.1	4.0e-09	47.73	TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]	[more]
PNT27018.1	5.8e-08	43.01	hypothetical protein POPTR_007G041400 [Populus trichocarpa]	[more]

BLAST of Sed0004872 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN97	6.2e-05	37.35	Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1	[more]

BLAST of Sed0004872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB6	2.8e-16	67.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1	[more]
A0A6N2MKA4	5.1e-10	46.74	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143385 PE=3 SV=...	[more]
A0A6N2KZU9	5.1e-10	46.74	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS143349 PE=3 SV=...	[more]
A0A061DGB8	1.9e-09	47.73	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ...	[more]
A0A2K1ZP13	2.8e-08	43.01	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041400 PE=3 ...	[more]

BLAST of Sed0004872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..94
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 10..91
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 10..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004872.1	Sed0004872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0048364	root development