Sed0004803 (gene) Chayote v1

Overview


Name	Sed0004803
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Avr9/Cf-9 rapidly elicited protein
Location	LG05: 4806373 .. 4807081 (-)
RNA-Seq Expression	Sed0004803
Synteny	Sed0004803

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAGAACCACCTTGTTCAACACGCTTTTAGTAACTTCAGGAAACCGCTCGGAATTTCGAAACCAGAACAAACAAGGAAACTCGCACTTTCCACAACCCATTATAAATCCCCGAAATTCTCTTCATCAAATTCATCACCAATCCAACAATCAAGAACAGCAAAAACTTCAACAAAAAGAGTAGAATCCAATCGAAGAAGAAGAAGATGAATTCGATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAACAGATCCTCGGCAGATTCTTTACGGCTTCTACCTCTTTGCCGCCGCCGTCCTTCTCTCGCAACCACGGCGCCGCCGCCGCCGATTCTCTGAAATCGCCGCTGCCGAGCAAGAAAGACGAAGCGAAACCTAAGTCAACGAAGTGTTCGTCGATGAGGCCGAGATTTGCTGTGGAGTTTGATGGAATCAATTGCTTTGAGACTATCGTTCCGAATTGATTTCTGAATCTCGTTTTCTGTTTATTACTATATTCTTTGCATTCTTTGCATTCTTTCAATCTTGATCAATACAGAGTAATTTTTTTGTTTTGTTTGATTCTGATACACGGAATTAGATAATTTGATTTTGTTCTGTTTGGGAATTTGATATATGAAATTTTGCACAATTCCTTGATTCTGTACTCTTCCTCTTCTTCCTTGATTTTATTTTTCTTCATTTGTTTCTTTTTTATATGGAATAGCAAC

mRNA sequence

CACAGAACCACCTTGTTCAACACGCTTTTAGTAACTTCAGGAAACCGCTCGGAATTTCGAAACCAGAACAAACAAGGAAACTCGCACTTTCCACAACCCATTATAAATCCCCGAAATTCTCTTCATCAAATTCATCACCAATCCAACAATCAAGAACAGCAAAAACTTCAACAAAAAGAGTAGAATCCAATCGAAGAAGAAGAAGATGAATTCGATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAACAGATCCTCGGCAGATTCTTTACGGCTTCTACCTCTTTGCCGCCGCCGTCCTTCTCTCGCAACCACGGCGCCGCCGCCGCCGATTCTCTGAAATCGCCGCTGCCGAGCAAGAAAGACGAAGCGAAACCTAAGTCAACGAAGTGTTCGTCGATGAGGCCGAGATTTGCTGTGGAGTTTGATGGAATCAATTGCTTTGAGACTATCGTTCCGAATTGATTTCTGAATCTCGTTTTCTGTTTATTACTATATTCTTTGCATTCTTTGCATTCTTTCAATCTTGATCAATACAGAGTAATTTTTTTGTTTTGTTTGATTCTGATACACGGAATTAGATAATTTGATTTTGTTCTGTTTGGGAATTTGATATATGAAATTTTGCACAATTCCTTGATTCTGTACTCTTCCTCTTCTTCCTTGATTTTATTTTTCTTCATTTGTTTCTTTTTTATATGGAATAGCAAC

Coding sequence (CDS)

ATGAATTCGATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAACAGATCCTCGGCAGATTCTTTACGGCTTCTACCTCTTTGCCGCCGCCGTCCTTCTCTCGCAACCACGGCGCCGCCGCCGCCGATTCTCTGAAATCGCCGCTGCCGAGCAAGAAAGACGAAGCGAAACCTAAGTCAACGAAGTGTTCGTCGATGAGGCCGAGATTTGCTGTGGAGTTTGATGGAATCAATTGCTTTGAGACTATCGTTCCGAATTGA

Protein sequence

MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKPKSTKCSSMRPRFAVEFDGINCFETIVPN

Homology

[Close]

BLAST of Sed0004803 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 4.4e-15
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKP-KS 60
          MNSMFS FDAFAAE ++G+F TASTS+P  + +   G +A+ +    +P KKDEA     
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60

Query: 61 TKCSSMRPRFAVEFDGINCFETIVPN 86
          +K SSM+PRFA+E DG+NCFET+VPN
Sbjct: 61 SKNSSMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Sed0004803 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-15
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFSLFDAFAAE +LG F  AS+S+  PSF+ N+   A+ ++  PLPSKK+E +PKS 
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSV--PSFTPNNN-NASPAVPKPLPSKKEE-EPKS- 60

Query: 61 KCSSMRPRFAVEFDGINCFETIVPN 86
          K S M+PRFA+E DG+NCFET+VPN
Sbjct: 61 KNSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Sed0004803 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.5e-15
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILG-RFFTASTSLPPPSFSRNHGAAAADSLKSPLPS-KKDEAKPK 60
          MNSMFSLFDAFAAE +LG  F  AS+S+P  + + N+  AA+ ++  PLPS KK+E KPK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 STKCSSMRPRFAVEFDGINCFETIVPN 86
          +   SS++PRFA+E DG+NCFET+VPN
Sbjct: 61 N---SSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of Sed0004803 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKP-KS 60
           MNSMFS FDAFAAE +LG+F TASTS+P  + +   G +A+ +    +P KK+EA     
Sbjct: 81  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 140

Query: 61  TKCSSMRPRFAVEFDGINCFETIVPN 86
           +K S M+PRFA+E DG+NCFET+VPN
Sbjct: 141 SKNSLMKPRFALELDGLNCFETLVPN 166

[Close]

BLAST of Sed0004803 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKP-KS 60
          MNSMFS FDAFAAE +LG+F TASTS+P  + +   G +A+ +    +P KK+EA     
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 TKCSSMRPRFAVEFDGINCFETIVPN 86
          +K S M+PRFA+E DG+NCFET+VPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Sed0004803 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILG-RFFTASTSLPPPSFSRNHGAAAADSLKSPLPS-KKDEAKPK 60
          MNSMFSLFDAFAAE +LG  F  AS+S+P  + + N+  AA+ ++  PLPS KK+E KPK
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 STKCSSMRPRFAVEFDGINCFETIVPN 86
          +   SS++PRFA+E DG+NCFET+VPN
Sbjct: 61 N---SSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of Sed0004803 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.6e-15
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFSLFDAFAAE +LG F  AS+S+  PSF+ N+   A+ ++  PLPSKK+E +PKS 
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSV--PSFTPNNN-NASPAVPKPLPSKKEE-EPKS- 60

Query: 61 KCSSMRPRFAVEFDGINCFETIVPN 86
          K S M+PRFA+E DG+NCFET+VPN
Sbjct: 61 KNSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Sed0004803 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKP-KS 60
          MNSMFS FDAFAAE +LG+F TASTS+P  + +   G +A+ +    +P KK+EA     
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 TKCSSMRPRFAVEFDGINCFETIVPN 86
          +K S M+PRFA+E DG+NCFET+VPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Sed0004803 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDE--AKPK 60
          MNSMFSLFDAFAAE ++ + F AS+S  P     N+G+    S+KSP  +   +   +PK
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASSSFAP-----NNGSGG--SVKSPPSNAAPDNLEQPK 60

Query: 61 STKCSSMR-PRFAVEFDGINCFETIV 84
          S K S +R PR A EFDG+NCFET+V
Sbjct: 61 SNKNSLLRPPRLAPEFDGLNCFETLV 79

[Close]

BLAST of Sed0004803 vs. ExPASy TrEMBL
Match: A0A6J0M7G2 (uncharacterized protein LOC108839994 OS=Raphanus sativus OX=3726 GN=LOC108839994 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-06
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFS FDA  AE I+G+  TA++ +  PS  RN  ++A  +  S L  KKDE   K+T
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASFICNPS-ERNPSSSAGQTASSSL--KKDE---KAT 60

Query: 61 KCSSMRPRFAVEFDGINCFETIV 84
            ++ +PR A+E DGI+CFETIV
Sbjct: 61 NLAAKQPRCALELDGIHCFETIV 76

[Close]

BLAST of Sed0004803 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFS FDA  AE I+G+  TA++ +     +    +++     + L  KKDE   K+ 
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 KCSSMRPRFAVEFDGINCFETIV 84
             +  PRFA+E DG++CFETIV
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Sed0004803 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.2e-06
Identity = 35/87 (40.23%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAE----QILGRFFTASTSLPPPSFSRNHGAAAADSLKSPLPSKKDEAK 60
          MNSMFS FDA  AE     ++   FTA+T+   P        AAA   ++    +K  A 
Sbjct: 1  MNSMFSAFDALFAEVMGKNLMASSFTATTATTKP--------AAAPQTQT---QEKANAS 60

Query: 61 PKSTKCSSMRPRFAVEFDGINCFETIV 84
           K        PRFA+E DG++CFETIV
Sbjct: 61 SKKIGLVQKIPRFALELDGLHCFETIV 76

The following BLAST results are available for this feature:

BLAST of Sed0004803 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522684.1	4.4e-15	55.81	uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]	[more]
XP_011654674.1	7.5e-15	62.35	uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
KAA0042638.1	7.5e-15	58.62	uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG6579594.1	3.7e-14	54.65	hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929066.1	3.7e-14	54.65	uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet...	[more]

BLAST of Sed0004803 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004803 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6N3	3.6e-15	58.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KJT8	3.6e-15	62.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1	[more]
A0A6J1EM23	1.8e-14	54.65	uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A6J1E0L6	1.9e-08	51.16	uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A6J0M7G2	3.1e-06	49.40	uncharacterized protein LOC108839994 OS=Raphanus sativus OX=3726 GN=LOC108839994...	[more]

BLAST of Sed0004803 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32928.1	1.5e-08	40.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G32920.1	5.2e-06	40.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..61
None	No IPR available	PANTHER	PTHR33641	OS06G0133500 PROTEIN	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004803.1	Sed0004803.1	mRNA