Sed0004785 (gene) Chayote v1

Overview


Name	Sed0004785
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 1
Location	LG11: 19390483 .. 19395378 (-)
RNA-Seq Expression	Sed0004785
Synteny	Sed0004785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTCCTTATCTGTGGGACAGCAGCTTTTTATATATGAAACGAAAAGAAAAAGAAAAAAGAAAAAAAAGGCCGCATCGGAAGAAAACGCGGAGCAGCCCCTTCTCGTCCCGCGGCTCATAACCCTCTCGCCGGAAGTTTTGTCCGTTCAGAAGTTCAGTTCGTGTCGTTTACCTTCTTACCTGACCAAAGTAGTTCCTCCAGCGCCGCCTCAGATCTGTACCTGCAGCCGTTTCAGATTTCGAGTTTTCAAGTGGCCACTCTTTTCGGGTTCGTTTCGACGTGGATTCCTGGTTGCGACCTTGCTGTTTTTGTAAGTATTCTTTGGGGAAATCTCCATGTTTGTTAAATTCGTTTCATTGCATGGTGTCGTTGTTGGTTCTAAAATTTGGTTCCAGTTTTTTTTAATCTTGATTTAGGTTTTATTCGAACGTCGTGTATTAGTAAGTATAATTTATGGTCCCTCTACCTATAGGAGAAAACTGTAGTTTATCCAAGTATAAGAAATTTTAATGAAAGAGTGTTTTGGCTCTTTTGCTACAAAAGTATGATTGTTAATTAATTTAGAATTTCACTTGTCACTCCATGCTATAGGCGTCAAGAAATCAAGGTTCTGGATGGGTTCGTTCAGTTTGAGGTTTTTTCTGTGTTTTGTACTTTCTGCTTGAGATATCAACGAATCTTTGATGTCTTGTTTATCGGTTATATGAGTTGCAACTTGGTTCATAGAATTTCAAGAAGATTTTCTGTCTATTATCCTTCAAAATTGCTTTTCGCTTTTGACAGTTCATTTCATATTATATTATGATACTGTTTTTGAAGACTAGTGGAAGAAGAAATTTGAAAATTGCCCTGTCTGTTTCTTTATTATTGTAGCGACCATTAACATTAAATTGCAACTAACGATTGACAAAGCTAGGTGAAGAATGAGGGCCCAAGTGTTATAACAACTAATCATGCCGACCATTTCACTCATTACAGAGCTTGAGAGATAAATTTATTCAACTTGTTCTCTCCTGTCTTACTCATATGCAATGGCAGATACTGGTGAAAATCAACAGCCTGAACAAGGTATTGCCGATTTTTGTCCTATCCTGTTTTTATATGTAAATATATAAGTTTCCCCATTTTCATCATGAACTTTTGTACGCATATAATTTGTCAGATACTAATTACTCTTTCTACATTTGTAATCCTTTGATTTCAGTCTGTAGCTTCTTCAGAAAGCCCACGAAGAACAAAAACATCAGAAAGCGGACTGTTGATGAAGATGAAGAGGACAACTCTACAACTGAGACTTCGATGCTGTTAAATCAGAAAAAAGCCCACAAGACTGAAAGCAAGCTCTATTTTTCTTCTGGACCTTCTAAAACTTCCTTGACTAATGAGTCAAATGTAGAATCCTATAAACCAATTTTCCAGTTTGAGTCTTCAAAAGAAATTCAAGTTCATCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAAACTGATTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAAGAGGCCTTGAAAGGTAAAGGAAAGAGTTCTGCGGGTGAAAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAGGCTGGTGGATCACATGGGCCGCTTAGAGCCTCTGCTCATATTAGAACTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACAGGTTACTGTGGTTATGGAGATTCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGACTGGGAGGAAGTAGAGAAAGCCAGGAAGAGAAAGTTAGCCATGCGATCTGATGATGGGGATGAGGATGCTGCAGAACAGAGCGATGAAGATGATGAAGATGCCTTGCCATTCGCTTGTTTTATTTGTCGTGAACCATTTGCGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTGAAGGTAATAGCTCTTTTCTGGTCTACTTTATCTTGGAATTGGAAATATGGTGATCGTGAAGTGCTTTTTTGTCGGGGAGGTTGAAATTTGCTTCACGATTCAAGTCTTGGTACTGTTTCTTTTGTAGTGATGATTTATCTTCCCTATTAATAACTATCATGGATTAGTCTAATGGTCAGAGGGCCTTAGGAAGTTAAGAGGTTATGAATTCAATTCATGGTGACCCCCTACGGGTTTCCTTGATGAACTAATGTTGTTTGTCACATGAAAATAGTTGAGGTGCACATAAGCTAGTCTGGAAGGACACACACTCACTGATATCAAAATAATAAATCTTCCCCATTAATTAGTCTAAAGTCTGAACTTCATTTACAATTAAAAATGGAGAAATTGTTTTCCATTATGAAAACGATTGAAAAATAATTATATTGCTTTATGCTTTTTCTGACGTATTTGTCCATTTTCATTCTGTGAGAGTATTGCTTAAGAGTATTTTGAGGTTAGGAGTAGGACATTAAGGAGAATTAGTTAGGGAGTTTCTATTATAAATATGTGGGATAAGGATTGTAGAAAGATAGATTATGTTTTGGGAAAATCAATTCTTGGTGGATTGGTAGTAAGGCCATTGATATTATTGTGTCTCTTAAGATATTGCAGTATAGCGTTAGCAAGTGCTTAGCTCAGTTGACATAGAAGGTAAGTTTATGACCAAGAGTCTATGAGTTTCAATTCCTCACCTCAATTATTTTGAACTCATAAGATATAACAATATAGTTATCATTGTTATTTTGATTTCGGTATTTGGATACCTTACAAAATAAAAGTTCAGTCATTCACTTACCATAGTTCTCAAGTGAAAAATCAATAATTATTTTCTTGGGGATTTTGCATGTATAACAAAAAAAGGCAAAATATTTTCATCTATAGCACAAAATCAAAACTTATTCATTTGTAGCAAAAAATTCAAATTGAGTTCTATTACTGGTTGAGTTCTATTAGTTCTATTAGTGATAGAATTCAATCAATAATAGACTCATTCTATCACTGCTTATGTTTTCTATCAGTGATAGAAATTCAAATTGAGTTCTATCACTAGTTGATTGATAGAAAACAATGTGCTATAGATGAATTATTTTAAAAATTCTGCTGCAAATATAATGAAAGAGGTAGAATGTATTGTTGATGGTAAATTTTCTATTTTCTATTTTCTTTGTAGAGAATTTTCCAAATATACCAAGTTTTTTTTGTTGAACAATATATCTTCCAATTAAATTTTGCAATTTAAAGGTATTTCTAGAATGCAATTTGATCAAGAACGTAAATAAATGGTTGGAAATAAACCATCATCAATTGGCTTAGATGTCAAGAGGGCTTCGGTAAATCAAAAGGTTAAGAATTCAATCCATGATGACCACCTACTTATGAATTAATTTCCTACCAGTTTCTTTGACATCCAAATGTTGTATGGTTAGATGGGTTACCCCGTAAGAATAGTGGATACAAGCTGGCTATATATAGAAAAAAAGAAGAATGTAAATAGAGAAAGTAGTGAGATGGCTGAAGCATTGGGATAATTTCTCTCCACGTATTGCAATTGATTCACTCATGTATTTCATGTGTTTGCATGTCTAGAGTTCATATCTTCTAATGCCAGGGATATATTCTTGGTTTGTTTCTCAAGAGCACACTTTTGTATGATCATTACTTCCTACTTCATTTCACATTTCATTCTTTTTTTCCCGTTATTTTATGTTCTGCCATGTCTTTGAAATGAATTTAAAATCATTATTTTTTTTTCTCTTTTATACAAATTCGCAGCACCATGCAAAGAATAAGAAATGTTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATAAAGAAAAGGATGGCTCAGAGTAAATAAGTTTTCCTTCATTGGCTGGTCGCTTGCTAGTCTTCTTTCAATTTGTAGCAAGATTATCTCTTGTCCTTATTTTTATGAGGAAGTCCAGTTTTCAGTATCTACTCGAAACTTGAGATCAAGTCAAGCCCTGTTGCAGTATGAGTGAGCATGGCGAATCATGGAAAATATTTCTTCGTTTCGGTGAAAATGACTTATTTTTTCTAATCTTAATTTCCTCCTTTCTCTGTATTGGATGATCTTTTTTGTAAACATCCTGGAACCACTCAAACTAATCATGTTTCAGTAGTTCGAGACTGAAAATACCGCTCTTGACTGCATGACATTTGGTCCTTTGAAGTTCATGAGATAGTATTCAAGGTAGATGGTTAGAAAGGATTTTTAAGTAGGGCTTTTTGTTGAACTCAAAATGTGTTTTTAATGTACTCGGCCTTCAGACTGGACGGTATCAAGTTATCTGCTCTATGTTTCTGCAAGTCACGTACACTTTTCAGAGAACTATTCAAATATGAGAACAAGATGAACTTGCCATTGTGGTCGGGAGTTTTAGCTGTTAATATATGCAATGTTTTAGTAACAATAAAACCCTAGATAGGTTAGAATGGTAAGATTGAATGCTTTTCTTTCACTGTTTTACCCTTGGTTTTTAAGTCTCAGATGAATCCGCTAGGTACACTGTCATTAAGCATTCTTGTGAATGTGATGGCTCTTGTGGAAAGTGAAAAGCAACGGATGGAGCTCGTTATGATCGAAGGTATGCTTTGTCTTACCATCTTGAGATTGAAGGGATGTGGTTGGGATTATAGAAAGCTTAGAAAGATTTGGATTTGACAGTATGATTCTAAGTATGTGCACAGGTTTTAATACAATTTTTATGTGTTTAATTGTCTCAGGGTTAAATTTATTCGATATTGTGTTAAAAAACAATTGGCAAAAGTGAAGAG

mRNA sequence

TTTCTTTCCTTATCTGTGGGACAGCAGCTTTTTATATATGAAACGAAAAGAAAAAGAAAAAAGAAAAAAAAGGCCGCATCGGAAGAAAACGCGGAGCAGCCCCTTCTCGTCCCGCGGCTCATAACCCTCTCGCCGGAAGTTTTGTCCGTTCAGAAGTTCAGTTCGTGTCGTTTACCTTCTTACCTGACCAAAGTAGTTCCTCCAGCGCCGCCTCAGATCTGTACCTGCAGCCGTTTCAGATTTCGAGTTTTCAAGTGGCCACTCTTTTCGGGTTCGTTTCGACGTGGATTCCTGGTTGCGACCTTGCTGTTTTTGTGAAGAATGAGGGCCCAAGTGTTATAACAACTAATCATGCCGACCATTTCACTCATTACAGAGCTTGAGAGATAAATTTATTCAACTTGTTCTCTCCTGTCTTACTCATATGCAATGGCAGATACTGGTGAAAATCAACAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAGCCCACGAAGAACAAAAACATCAGAAAGCGGACTGTTGATGAAGATGAAGAGGACAACTCTACAACTGAGACTTCGATGCTGTTAAATCAGAAAAAAGCCCACAAGACTGAAAGCAAGCTCTATTTTTCTTCTGGACCTTCTAAAACTTCCTTGACTAATGAGTCAAATGTAGAATCCTATAAACCAATTTTCCAGTTTGAGTCTTCAAAAGAAATTCAAGTTCATCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAAACTGATTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAAGAGGCCTTGAAAGGTAAAGGAAAGAGTTCTGCGGGTGAAAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAGGCTGGTGGATCACATGGGCCGCTTAGAGCCTCTGCTCATATTAGAACTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACAGGTTACTGTGGTTATGGAGATTCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGACTGGGAGGAAGTAGAGAAAGCCAGGAAGAGAAAGTTAGCCATGCGATCTGATGATGGGGATGAGGATGCTGCAGAACAGAGCGATGAAGATGATGAAGATGCCTTGCCATTCGCTTGTTTTATTTGTCGTGAACCATTTGCGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTGAAGCACCATGCAAAGAATAAGAAATGTTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATAAAGAAAAGGATGGCTCAGAGTAAATAAGTTTTCCTTCATTGGCTGGTCGCTTGCTAGTCTTCTTTCAATTTGTAGCAAGATTATCTCTTGTCCTTATTTTTATGAGGAAGTCCAGTTTTCAGTATCTACTCGAAACTTGAGATCAAGTCAAGCCCTGTTGCAGTATGAGTGAGCATGGCGAATCATGGAAAATATTTCTTCGTTTCGGTGAAAATGACTTATTTTTTCTAATCTTAATTTCCTCCTTTCTCTGTATTGGATGATCTTTTTTGTAAACATCCTGGAACCACTCAAACTAATCATGTTTCAGTAGTTCGAGACTGAAAATACCGCTCTTGACTGCATGACATTTGGTCCTTTGAAGTTCATGAGATAGTATTCAAGGTAGATGGTTAGAAAGGATTTTTAAGTAGGGCTTTTTGTTGAACTCAAAATGTGTTTTTAATGTACTCGGCCTTCAGACTGGACGGTATCAAGTTATCTGCTCTATGTTTCTGCAAGTCACGTACACTTTTCAGAGAACTATTCAAATATGAGAACAAGATGAACTTGCCATTGTGGTCGGGAGTTTTAGCTGTTAATATATGCAATGTTTTAGTAACAATAAAACCCTAGATAGGTTAGAATGGTAAGATTGAATGCTTTTCTTTCACTGTTTTACCCTTGGTTTTTAAGTCTCAGATGAATCCGCTAGGTACACTGTCATTAAGCATTCTTGTGAATGTGATGGCTCTTGTGGAAAGTGAAAAGCAACGGATGGAGCTCGTTATGATCGAAGGTATGCTTTGTCTTACCATCTTGAGATTGAAGGGATGTGGTTGGGATTATAGAAAGCTTAGAAAGATTTGGATTTGACAGTATGATTCTAAGTATGTGCACAGGTTTTAATACAATTTTTATGTGTTTAATTGTCTCAGGGTTAAATTTATTCGATATTGTGTTAAAAAACAATTGGCAAAAGTGAAGAG

Coding sequence (CDS)

ATGGCAGATACTGGTGAAAATCAACAGCCTGAACAAGTCTGTAGCTTCTTCAGAAAGCCCACGAAGAACAAAAACATCAGAAAGCGGACTGTTGATGAAGATGAAGAGGACAACTCTACAACTGAGACTTCGATGCTGTTAAATCAGAAAAAAGCCCACAAGACTGAAAGCAAGCTCTATTTTTCTTCTGGACCTTCTAAAACTTCCTTGACTAATGAGTCAAATGTAGAATCCTATAAACCAATTTTCCAGTTTGAGTCTTCAAAAGAAATTCAAGTTCATCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAAACTGATTTCTCAAGAGATGCACGAGCCATTCGTGAGAGAGTTTTGAAGCAAGCTGAAGAGGCCTTGAAAGGTAAAGGAAAGAGTTCTGCGGGTGAAAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAGGCTGGTGGATCACATGGGCCGCTTAGAGCCTCTGCTCATATTAGAACTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACAGGTTACTGTGGTTATGGAGATTCATGTAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGACTGGGAGGAAGTAGAGAAAGCCAGGAAGAGAAAGTTAGCCATGCGATCTGATGATGGGGATGAGGATGCTGCAGAACAGAGCGATGAAGATGATGAAGATGCCTTGCCATTCGCTTGTTTTATTTGTCGTGAACCATTTGCGGATCCTGTTGTGACCAAGTGCAAACATTACTTCTGTGAGCATTGTGCACTGAAGCACCATGCAAAGAATAAGAAATGTTTCGTTTGCAATCAGCCTACGCTTGGAATCTTTAACACGGCTCATGAGATAAAGAAAAGGATGGCTCAGAGTAAATAA

Protein sequence

MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLYFSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKRMAQSK

Homology

[Close]

BLAST of Sed0004785 vs. NCBI nr
Match: XP_023548600.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548608.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_023548618.1 zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >KAG7032517.1 Zinc finger CCCH domain-containing protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 608.2 bits (1567), Expect = 4.1e-170
Identity = 299/322 (92.86%), Postives = 314/322 (97.52%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRTVDEDEED+ ++ETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++LTNESNVES KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEIKK+MA+SK
Sbjct: 301 NQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0004785 vs. NCBI nr
Match: XP_022958735.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita moschata])

HSP 1 Score: 608.2 bits (1567), Expect = 4.1e-170
Identity = 299/322 (92.86%), Postives = 314/322 (97.52%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRTVDEDEE++ +TETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++LTNESNVES KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEIKK+MA+SK
Sbjct: 301 NQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0004785 vs. NCBI nr
Match: KAG6601808.1 (Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 606.7 bits (1563), Expect = 1.2e-169
Identity = 298/321 (92.83%), Postives = 313/321 (97.51%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRTVDEDEED+ ++ETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSSETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++LTNESNVES KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQS 322
           NQPTLGIFNTAHEIKK+MA+S
Sbjct: 301 NQPTLGIFNTAHEIKKKMAES 321

[Close]

BLAST of Sed0004785 vs. NCBI nr
Match: XP_022971769.1 (zinc finger CCCH domain-containing protein 1 [Cucurbita maxima])

HSP 1 Score: 606.3 bits (1562), Expect = 1.5e-169
Identity = 299/322 (92.86%), Postives = 312/322 (96.89%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRTVDEDEED+ +TETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++LTNESNVES KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAMRS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMRS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED AEQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALK HAKNKKCFVC
Sbjct: 241 DDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEIKK+MA+SK
Sbjct: 301 NQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0004785 vs. NCBI nr
Match: XP_004149426.1 (zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypothetical protein Csa_018272 [Cucumis sativus])

HSP 1 Score: 596.3 bits (1536), Expect = 1.6e-166
Identity = 295/322 (91.61%), Postives = 306/322 (95.03%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTG+ Q  EQVCSFFRKPTKNKNIRKRTVDEDEE++S  ETS LLNQKKA KTESKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK S +NESNVE  KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED +EQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEI+KRMAQSK
Sbjct: 301 NQPTLGIFNTAHEIRKRMAQSK 322

[Close]

BLAST of Sed0004785 vs. ExPASy Swiss-Prot
Match: Q8GX84 (Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=At1g01350 PE=2 SV=2)

HSP 1 Score: 473.0 bits (1216), Expect = 2.7e-132
Identity = 235/318 (73.90%), Postives = 272/318 (85.53%), Query Frame = 0


Query: 6   ENQQPEQVCSFFRKPTKNKNIRKRTVDEDEED-NSTTETSMLLNQKKAHKTESKLYFSSG 65
           +  Q +QVC+FF+KPTK+KNIRKRT+D DEED +S +E+S+L N KK  K +SKLYFSSG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQA 125
           PSK+S T     E  + +F ++SSKEIQV +DS ATATLETETDF++DARAIRERVLK+A
Sbjct: 82  PSKSSTTTSGAPE--RSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKA 141

Query: 126 EEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSARF 185
           +EALKG  K ++ EKLYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR SARF
Sbjct: 142 DEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARF 201

Query: 186 DYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGD 245
           DYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EK+WEE EK RKR  AM  +D D
Sbjct: 202 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDED 261

Query: 246 EDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPT 305
           ++A + SDE DE+ALPFACFICREPF DPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT
Sbjct: 262 DEADKDSDE-DENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPT 321

Query: 306 LGIFNTAHEIKKRMAQSK 323
           +GIFN AHEIKKRMA+ +
Sbjct: 322 MGIFNAAHEIKKRMAEER 336

[Close]

BLAST of Sed0004785 vs. ExPASy Swiss-Prot
Match: Q9FNG6 (Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN=At5g06420 PE=2 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 3.0e-131
Identity = 235/322 (72.98%), Postives = 272/322 (84.47%), Query Frame = 0


Query: 3   DTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEED-NSTTETSMLLNQKKAHKTESKLYF 62
           D   NQ+ +QVC+FF+KPTK+KNIRKRT+D DEED +S +E+S+L N KK  K +S LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPS-KTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 122
           SSGPS +TS   E      +P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERV
Sbjct: 117 SSGPSTRTSGAPE------RPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERV 176

Query: 123 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 182
           LK+A+ ALKG  K ++ EKLYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR 
Sbjct: 177 LKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRV 236

Query: 183 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 242
           SARFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EK+WEE EK RKR  AM  
Sbjct: 237 SARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV 296

Query: 243 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 302
           +D D++A + SDE DE+ALPFACFICREPF DPVVTKCKHYFCEHCALKHH KNKKCFVC
Sbjct: 297 EDDDDEADKDSDE-DENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVC 356

Query: 303 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPT+GIFN AHEIKKRMA+ +
Sbjct: 357 NQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0004785 vs. ExPASy Swiss-Prot
Match: Q6K4V3 (Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0301000 PE=2 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 2.3e-115
Identity = 216/321 (67.29%), Postives = 244/321 (76.01%), Query Frame = 0


Query: 13  VCSFFRKPTKNKNIRKRTV-----DEDEEDNSTTETSMLLNQKKAHKTESKLYFSSGPSK 72
           VCSF RKP   KNIRKR       D+D+ED S    +     KKA  + SKL+FSS    
Sbjct: 18  VCSFVRKPP--KNIRKRPTAPAGSDDDDEDGSGAIAA--ARAKKAPSSTSKLFFSSADGS 77

Query: 73  TSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEA 132
           +              FQ+ESS+ IQ   DSRATATLETET+F RDARAIRER LKQAEE+
Sbjct: 78  SEPRR----------FQYESSRTIQASTDSRATATLETETEFDRDARAIRERQLKQAEES 137

Query: 133 LK------GKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTS 192
           LK           S   ++YKG++ Y DYKAGFRREHT+SSEKAGGSHGPLRASAHIR S
Sbjct: 138 LKKNPSAPASSSGSGSGEVYKGIHGYTDYKAGFRREHTVSSEKAGGSHGPLRASAHIRLS 197

Query: 193 ARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSD 252
           ARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQ+EK+WEE EKARKR++AM  D
Sbjct: 198 ARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQIEKEWEEAEKARKRRIAMGGD 257

Query: 253 DGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCN 312
             D +A E+ D+DDE+ALPFAC+ICREPF DPVVTKCKHYFCEHCALKHH+KNKKCFVCN
Sbjct: 258 GSDYEAGEEDDDDDEEALPFACYICREPFVDPVVTKCKHYFCEHCALKHHSKNKKCFVCN 317

Query: 313 QPTLGIFNTAHEIKKRMAQSK 323
           +PTLGIFN A EI+K+MAQ K
Sbjct: 318 KPTLGIFNAAQEIRKKMAQDK 324

[Close]

BLAST of Sed0004785 vs. ExPASy Swiss-Prot
Match: O15541 (E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.8e-49
Identity = 125/330 (37.88%), Postives = 185/330 (56.06%), Query Frame = 0


Query: 11  EQVCSF-FRKPTKN--KNIRKRTV---DEDEEDNSTTETSMLLNQKKAHKTESKLY---F 70
           +QVC+F F+KP +      RKR     +  E  +S+ E   ++  +K   T + +     
Sbjct: 12  DQVCTFLFKKPGRKGAAGRRKRPACDPEPGESGSSSDEGCTVVRPEKKRVTHNPMIQKTR 71

Query: 71  SSGPSKTSL-------TNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDAR 130
            SG  K +          E+  ES   +++   S +     D  ATA  E +T+  RDA+
Sbjct: 72  DSGKQKAAYGDLSSEEEEENEPESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQ 131

Query: 131 AIRERVLKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGG--SHGPL 190
           AI ER  K  EE L+GK      +K+Y+G+N Y  Y    + + T     + G    GP+
Sbjct: 132 AIFERSQKIQEE-LRGK----EDDKIYRGINNYQKY---MKPKDTSMGNASSGMVRKGPI 191

Query: 191 RASAHIRTSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKAR 250
           RA  H+R + R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK GWQ+E++ +E     
Sbjct: 192 RAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE----- 251

Query: 251 KRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHA 310
             +  +  D+  E  +      D++ +PF CFICR+ F +PVVTKC+HYFCE CAL+H  
Sbjct: 252 -GRYGVYEDENYEVGS------DDEEIPFKCFICRQSFQNPVVTKCRHYFCESCALQHFR 311

Query: 311 KNKKCFVCNQPTLGIFNTAHEIKKRMAQSK 323
              +C+VC+Q T G+FN A E+  ++ + +
Sbjct: 312 TTPRCYVCDQQTNGVFNPAKELIAKLEKHR 321

[Close]

BLAST of Sed0004785 vs. ExPASy Swiss-Prot
Match: Q67ER4 (E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.4e-48
Identity = 124/330 (37.58%), Postives = 188/330 (56.97%), Query Frame = 0


Query: 11  EQVCSF-FRKPTKN--KNIRKRTVDEDEEDNSTTET----SMLLNQKK--AHKTESKLYF 70
           +QVC+F F+KP +      RKR +   E  +S++ +    +++  +KK   H    +   
Sbjct: 12  DQVCTFLFKKPGRKVAAGRRKRPICNQESGDSSSSSDEGNTVVRPEKKRAVHNPMIQKTR 71

Query: 71  SSGPSKTSL-------TNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDAR 130
            SG  K +          E+  ES   +++   S +     D  ATA  E +T+  RDA+
Sbjct: 72  GSGKQKVAYGDLSSEEEEENKSESLGVVYKSTRSAKPVGPEDMGATAVYELDTEKERDAQ 131

Query: 131 AIRERVLKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGG--SHGPL 190
           AI ER  K  EE L+G+      +K+Y+G+N   +Y+   + + T     + G    GP+
Sbjct: 132 AIFERSQKIQEE-LRGQ----EDDKIYRGIN---NYQKFMKPKDTSMGNASSGMVRKGPI 191

Query: 191 RASAHIRTSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKAR 250
           RA  H+R + R+DYQPDICKDYKETG+CG+GDSCKF+HDR DYK GWQ+E++ +E     
Sbjct: 192 RAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDE----- 251

Query: 251 KRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHA 310
             +  +  D+  E  +      DE+ +PF CFICR+ F +PVVTKC+HYFCE CAL+H  
Sbjct: 252 -GRYGVYEDENYEVGS------DEEEIPFKCFICRQTFQNPVVTKCRHYFCESCALQHFR 311

Query: 311 KNKKCFVCNQPTLGIFNTAHEIKKRMAQSK 323
              +C+VC+Q T G+FN A E+  ++ + +
Sbjct: 312 TTPRCYVCDQQTNGVFNPAKELIAKLEKHR 321

[Close]

BLAST of Sed0004785 vs. ExPASy TrEMBL
Match: A0A6J1H4B5 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111459918 PE=4 SV=1)

HSP 1 Score: 608.2 bits (1567), Expect = 2.0e-170
Identity = 299/322 (92.86%), Postives = 314/322 (97.52%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRTVDEDEE++ +TETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEESKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++LTNESNVES KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDEDAAEQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDAAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEIKK+MA+SK
Sbjct: 301 NQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0004785 vs. ExPASy TrEMBL
Match: A0A6J1I9H7 (zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111470453 PE=4 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 7.5e-170
Identity = 299/322 (92.86%), Postives = 312/322 (96.89%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRTVDEDEED+ +TETS+L NQKKA KT+SKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTVDEDEEDSKSTETSVLQNQKKAPKTDSKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK++LTNESNVES KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKSNLTNESNVESDKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAMRS
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMRS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED AEQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALK HAKNKKCFVC
Sbjct: 241 DDGDEDVAEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKRHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEIKK+MA+SK
Sbjct: 301 NQPTLGIFNTAHEIKKKMAESK 322

[Close]

BLAST of Sed0004785 vs. ExPASy TrEMBL
Match: A0A0A0KFS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 7.7e-167
Identity = 295/322 (91.61%), Postives = 306/322 (95.03%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTG+ Q  EQVCSFFRKPTKNKNIRKRTVDEDEE++S  ETS LLNQKKA KTESKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK S +NESNVE  KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSSSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED +EQSDED+EDALPFACFICREPF DPVVTKCKHYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEI+KRMAQSK
Sbjct: 301 NQPTLGIFNTAHEIRKRMAQSK 322

[Close]

BLAST of Sed0004785 vs. ExPASy TrEMBL
Match: A0A1S3CS03 (zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103504086 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.1e-165
Identity = 293/322 (90.99%), Postives = 306/322 (95.03%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTG+ Q  EQVCSFFRKPTKNKNIRKRTVDEDEE++S  ETS LLNQKKA KTESKLY
Sbjct: 1   MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK SL+NESNVE  KPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV
Sbjct: 61  FSSGPSKNSLSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 180
           LKQAEEALKGKGKSS GEKLYKGVNAYVDYKAGFRREHTISSEKAGG+HGPLRASAHIR 
Sbjct: 121 LKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRA 180

Query: 181 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 240
           SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM+S
Sbjct: 181 SARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKS 240

Query: 241 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 300
           DDGDED++EQSDED+E ALPFACFICREPF DPVVTKC HYFCEHCALKHHAKNKKCFVC
Sbjct: 241 DDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKHHAKNKKCFVC 300

Query: 301 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPTLGIFNTAHEI+K+MAQSK
Sbjct: 301 NQPTLGIFNTAHEIRKKMAQSK 322

[Close]

BLAST of Sed0004785 vs. ExPASy TrEMBL
Match: A0A6J1BYC6 (zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111006576 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 1.9e-165
Identity = 293/323 (90.71%), Postives = 311/323 (96.28%), Query Frame = 0


Query: 1   MADTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEEDNSTTETSMLLNQKKAHKTESKLY 60
           M DTGENQQPEQVCSFF+KPTKNKNIRKRT+DEDEE++S TETS+LLNQKKA KTESKLY
Sbjct: 1   MTDTGENQQPEQVCSFFKKPTKNKNIRKRTIDEDEEEDSKTETSLLLNQKKALKTESKLY 60

Query: 61  FSSGPSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 120
           FSSGPSK+SL+NESNVES KPIFQFESSKEIQVHHDS+ATATLETET+FSRDARAIRERV
Sbjct: 61  FSSGPSKSSLSNESNVESDKPIFQFESSKEIQVHHDSKATATLETETEFSRDARAIRERV 120

Query: 121 LKQAEEALKGKGKSSAGE-KLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIR 180
           LKQA+EALKGKGKSS  E KLYKGVNAYVDYKAGFRRE TISSEKAGG+HGPLRASAHIR
Sbjct: 121 LKQADEALKGKGKSSGDEKKLYKGVNAYVDYKAGFRREQTISSEKAGGAHGPLRASAHIR 180

Query: 181 TSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMR 240
            SARFDYQPDICKDYKETGYCGYGD+CKFMHDRGDYKSGWQLEK+WEEVEKARKRKLAM 
Sbjct: 181 ASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMG 240

Query: 241 SDDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFV 300
           SD+GDED AEQSDED+EDALPFACFICREPF DPV+TKCKHYFCEHCALKHHAKNKKCFV
Sbjct: 241 SDEGDEDTAEQSDEDEEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHAKNKKCFV 300

Query: 301 CNQPTLGIFNTAHEIKKRMAQSK 323
           CNQPTLGIFNTAHEI+K+MAQSK
Sbjct: 301 CNQPTLGIFNTAHEIRKKMAQSK 323

[Close]

BLAST of Sed0004785 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 473.0 bits (1216), Expect = 1.9e-133
Identity = 235/318 (73.90%), Postives = 272/318 (85.53%), Query Frame = 0


Query: 6   ENQQPEQVCSFFRKPTKNKNIRKRTVDEDEED-NSTTETSMLLNQKKAHKTESKLYFSSG 65
           +  Q +QVC+FF+KPTK+KNIRKRT+D DEED +S +E+S+L N KK  K +SKLYFSSG
Sbjct: 22  QETQSQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSKLYFSSG 81

Query: 66  PSKTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQA 125
           PSK+S T     E  + +F ++SSKEIQV +DS ATATLETETDF++DARAIRERVLK+A
Sbjct: 82  PSKSSTTTSGAPE--RSVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERVLKKA 141

Query: 126 EEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRTSARF 185
           +EALKG  K ++ EKLYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR SARF
Sbjct: 142 DEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARF 201

Query: 186 DYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGD 245
           DYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EK+WEE EK RKR  AM  +D D
Sbjct: 202 DYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGVEDED 261

Query: 246 EDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPT 305
           ++A + SDE DE+ALPFACFICREPF DPVVTKCKHYFCEHCALKHH KNKKCFVCNQPT
Sbjct: 262 DEADKDSDE-DENALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPT 321

Query: 306 LGIFNTAHEIKKRMAQSK 323
           +GIFN AHEIKKRMA+ +
Sbjct: 322 MGIFNAAHEIKKRMAEER 336

[Close]

BLAST of Sed0004785 vs. TAIR 10
Match: AT5G06420.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 469.5 bits (1207), Expect = 2.1e-132
Identity = 235/322 (72.98%), Postives = 272/322 (84.47%), Query Frame = 0


Query: 3   DTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEED-NSTTETSMLLNQKKAHKTESKLYF 62
           D   NQ+ +QVC+FF+KPTK+KNIRKRT+D DEED +S +E+S+L N KK  K +S LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPS-KTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 122
           SSGPS +TS   E      +P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERV
Sbjct: 117 SSGPSTRTSGAPE------RPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERV 176

Query: 123 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 182
           LK+A+ ALKG  K ++ EKLYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR 
Sbjct: 177 LKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRV 236

Query: 183 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 242
           SARFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EK+WEE EK RKR  AM  
Sbjct: 237 SARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV 296

Query: 243 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 302
           +D D++A + SDE DE+ALPFACFICREPF DPVVTKCKHYFCEHCALKHH KNKKCFVC
Sbjct: 297 EDDDDEADKDSDE-DENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVC 356

Query: 303 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPT+GIFN AHEIKKRMA+ +
Sbjct: 357 NQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0004785 vs. TAIR 10
Match: AT5G06420.2 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 469.5 bits (1207), Expect = 2.1e-132
Identity = 235/322 (72.98%), Postives = 272/322 (84.47%), Query Frame = 0


Query: 3   DTGENQQPEQVCSFFRKPTKNKNIRKRTVDEDEED-NSTTETSMLLNQKKAHKTESKLYF 62
           D   NQ+ +QVC+FF+KPTK+KNIRKRT+D DEED +S +E+S+L N KK  K +S LYF
Sbjct: 57  DNSNNQESQQVCTFFKKPTKSKNIRKRTIDADEEDGDSKSESSILQNLKKVAKPDSNLYF 116

Query: 63  SSGPS-KTSLTNESNVESYKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERV 122
           SSGPS +TS   E      +P+F ++SSKEIQV +DS ATATLETETDF++DARAIRERV
Sbjct: 117 SSGPSTRTSGAPE------RPVFHYDSSKEIQVQNDSGATATLETETDFNQDARAIRERV 176

Query: 123 LKQAEEALKGKGKSSAGEKLYKGVNAYVDYKAGFRREHTISSEKAGGSHGPLRASAHIRT 182
           LK+A+ ALKG  K ++ EKLYKG++ Y D+KAGFRRE TISSEKAGGSHGPLRASAHIR 
Sbjct: 177 LKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRV 236

Query: 183 SARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKDWEEVEKARKRKLAMRS 242
           SARFDYQPDICKDYKETGYCGYGDSCKF+HDRGDYK GWQ+EK+WEE EK RKR  AM  
Sbjct: 237 SARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWEEAEKVRKRNKAMGV 296

Query: 243 DDGDEDAAEQSDEDDEDALPFACFICREPFADPVVTKCKHYFCEHCALKHHAKNKKCFVC 302
           +D D++A + SDE DE+ALPFACFICREPF DPVVTKCKHYFCEHCALKHH KNKKCFVC
Sbjct: 297 EDDDDEADKDSDE-DENALPFACFICREPFLDPVVTKCKHYFCEHCALKHHTKNKKCFVC 356

Query: 303 NQPTLGIFNTAHEIKKRMAQSK 323
           NQPT+GIFN AHEIKKRMA+ +
Sbjct: 357 NQPTMGIFNAAHEIKKRMAEER 371

[Close]

BLAST of Sed0004785 vs. TAIR 10
Match: AT4G01023.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 7.2e-24
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 209 MHDRGDYKSGWQLEKDWEEVEKARKRKLAMRSDDGDEDAAEQSDEDDEDALPFACFICRE 268
           + D        +LEK  ++++K   RKL        E     + E+D+DALP AC IC+ 
Sbjct: 40  VEDEDSNNESSRLEKLEKKIKKETARKL--------ETDFVLTGEEDDDALPLACSICQN 99

Query: 269 PFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIKKRMAQSK 323
           PF DPVVT C HYFC+ CALKHH +N  CFVCN+PTLG+F+TA EIK+R+ + +
Sbjct: 100 PFLDPVVTNCNHYFCDKCALKHHTENDTCFVCNEPTLGLFDTAVEIKERIEEER 145

The following BLAST results are available for this feature:

BLAST of Sed0004785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548600.1	4.1e-170	92.86	zinc finger CCCH domain-containing protein 1 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022958735.1	4.1e-170	92.86	zinc finger CCCH domain-containing protein 1 [Cucurbita moschata]	[more]
KAG6601808.1	1.2e-169	92.83	Zinc finger CCCH domain-containing protein 1, partial [Cucurbita argyrosperma su...	[more]
XP_022971769.1	1.5e-169	92.86	zinc finger CCCH domain-containing protein 1 [Cucurbita maxima]	[more]
XP_004149426.1	1.6e-166	91.61	zinc finger CCCH domain-containing protein 1 [Cucumis sativus] >KGN47699.1 hypot...	[more]

BLAST of Sed0004785 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GX84	2.7e-132	73.90	Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9FNG6	3.0e-131	72.98	Zinc finger CCCH domain-containing protein 51 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6K4V3	2.3e-115	67.29	Zinc finger CCCH domain-containing protein 15 OS=Oryza sativa subsp. japonica OX...	[more]
O15541	4.8e-49	37.88	E3 ubiquitin-protein ligase RNF113A OS=Homo sapiens OX=9606 GN=RNF113A PE=1 SV=1	[more]
Q67ER4	1.4e-48	37.58	E3 ubiquitin-protein ligase RNF113A OS=Bos taurus OX=9913 GN=RNF113A PE=2 SV=1	[more]

BLAST of Sed0004785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4B5	2.0e-170	92.86	zinc finger CCCH domain-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1I9H7	7.5e-170	92.86	zinc finger CCCH domain-containing protein 1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A0A0KFS0	7.7e-167	91.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G382870 PE=4 SV=1	[more]
A0A1S3CS03	1.1e-165	90.99	zinc finger CCCH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1BYC6	1.9e-165	90.71	zinc finger CCCH domain-containing protein 1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of Sed0004785 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01350.1	1.9e-133	73.90	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.1	2.1e-132	72.98	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT5G06420.2	2.1e-132	72.98	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein	[more]
AT4G01023.1	7.2e-24	47.37	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 263..312 e-value: 7.0E-4 score: 28.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 263..286 score: 8.594486
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 185..212 e-value: 1.1E-7 score: 41.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 186..211 e-value: 4.7E-10 score: 39.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 185..213 score: 14.877594
None	No IPR available	GENE3D	4.10.1000.10		coord: 181..216 e-value: 1.2E-6 score: 29.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	PANTHER	PTHR12930:SF9	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE	coord: 1..290
None	No IPR available	CDD	cd16539	RING-HC_RNF113A_B	coord: 261..289 e-value: 3.84813E-17 score: 71.8779
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 261..293
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 263..287 e-value: 1.0E-6 score: 28.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 217..313 e-value: 7.8E-11 score: 43.6
IPR039971	Pre-mRNA-splicing factor CWC24-like	PANTHER	PTHR12930	ZINC FINGER PROTEIN 183	coord: 1..290
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 184..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004785.1	Sed0004785.1	mRNA
Sed0004785.2	Sed0004785.2	mRNA
Sed0004785.3	Sed0004785.3	mRNA
Sed0004785.4	Sed0004785.4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034247	snoRNA splicing
cellular_component	GO:0000932	P-body
cellular_component	GO:0005684	U2-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding