Sed0004700 (gene) Chayote v1

Overview
NameSed0004700
Typegene
OrganismSechium edule (Chayote v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein .
LocationLG05: 36293698 .. 36293856 (+)
RNA-Seq ExpressionSed0004700
SyntenySed0004700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAGCGTAGCTAATCGCCATGCAATAATGCCTCCTCCTCTAGTGTCGACGCTCTCGATAAACCGATATAAATATGTTGAGATTGACGCTTTTCGACCAACCTCACCGGGGCACAGCCCCGGGGTTGGCCACGACGGTCCTCCCGGTGCACCGTAG

mRNA sequence

ATGGTTAGCGTAGCTAATCGCCATGCAATAATGCCTCCTCCTCTAGTGTCGACGCTCTCGATAAACCGATATAAATATGTTGAGATTGACGCTTTTCGACCAACCTCACCGGGGCACAGCCCCGGGGTTGGCCACGACGGTCCTCCCGGTGCACCGTAG

Coding sequence (CDS)

ATGGTTAGCGTAGCTAATCGCCATGCAATAATGCCTCCTCCTCTAGTGTCGACGCTCTCGATAAACCGATATAAATATGTTGAGATTGACGCTTTTCGACCAACCTCACCGGGGCACAGCCCCGGGGTTGGCCACGACGGTCCTCCCGGTGCACCGTAG

Protein sequence

MVSVANRHAIMPPPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP
Homology
BLAST of Sed0004700 vs. NCBI nr
Match: KAG6608019.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MVSVANRHAIMPPPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGA 52
          +V   NRHAI PP  +ST SINRYKYVE+DAFRPTSPGHSPGVGH  PPGA
Sbjct: 35 VVGFGNRHAITPPASMSTFSINRYKYVEMDAFRPTSPGHSPGVGHKDPPGA 85

BLAST of Sed0004700 vs. NCBI nr
Match: KAG6591857.1 (Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0

Query: 5  ANRHAIMPPPLVSTL--SINRYKYVEIDAFRPTSPGHSPGVGHDGPPG 51
          A+ HAI+PP  VSTL  SINRYKYVE DAFRPT+PGHSPGVGH  PPG
Sbjct: 47 AHCHAILPPAPVSTLAFSINRYKYVETDAFRPTTPGHSPGVGHTDPPG 94

BLAST of Sed0004700 vs. NCBI nr
Match: OMP07954.1 (hypothetical protein CCACVL1_01186 [Corchorus capsularis])

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 7  RHAIMPPPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          R AI PP +     INRYK  E DAFRPTSPGHSPGVGH+ PP +P
Sbjct: 29 RKAIRPPSISVGFRINRYKMTETDAFRPTSPGHSPGVGHNSPPSSP 74

BLAST of Sed0004700 vs. NCBI nr
Match: OAY29952.1 (hypothetical protein MANES_15G184800v8 [Manihot esculenta])

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 13 PPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          PP      INRYKY E +AFRPTSPGHSPGVGH  PPGAP
Sbjct: 50 PPSFILYGINRYKYTESEAFRPTSPGHSPGVGHKDPPGAP 89

BLAST of Sed0004700 vs. NCBI nr
Match: KAF8033451.1 (hypothetical protein BT93_D2151 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 63.2 bits (152), Expect = 7.9e-07
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 13 PPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          PP +    INRYK  E +AFRPTSPGHSPGVGH+ PPGAP
Sbjct: 52 PPSIGRTVINRYKKTETEAFRPTSPGHSPGVGHNEPPGAP 91

BLAST of Sed0004700 vs. ExPASy Swiss-Prot
Match: Q3EBM6 (Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.6e-05
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 21 INRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          INR+K +E DAFRPT  G S G+GH  PPGAP
Sbjct: 55 INRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

BLAST of Sed0004700 vs. ExPASy TrEMBL
Match: A0A0A0KWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-10
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 6  NRHAIMPPPLVS---TLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          N HAI PP  VS   + SINRYKYVE DAFRPTSPGHSPGVGH+ PPG P
Sbjct: 42 NPHAITPPAPVSLETSFSINRYKYVETDAFRPTSPGHSPGVGHNEPPGKP 91

BLAST of Sed0004700 vs. ExPASy TrEMBL
Match: A0A1R3KLK5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01186 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 7  RHAIMPPPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          R AI PP +     INRYK  E DAFRPTSPGHSPGVGH+ PP +P
Sbjct: 29 RKAIRPPSISVGFRINRYKMTETDAFRPTSPGHSPGVGHNSPPSSP 74

BLAST of Sed0004700 vs. ExPASy TrEMBL
Match: A0A2N9H1U7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36368 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 10 IMP-PPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          IMP PP     +INRYK VE DAFRPTSPGHSPGVGH+ PP AP
Sbjct: 43 IMPKPPSTHWFTINRYKKVEADAFRPTSPGHSPGVGHEQPPAAP 86

BLAST of Sed0004700 vs. ExPASy TrEMBL
Match: A0A2C9UJ23 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 29/40 (72.50%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 13 PPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          PP      INRYKY E +AFRPTSPGHSPGVGH  PPGAP
Sbjct: 50 PPSFILYGINRYKYTESEAFRPTSPGHSPGVGHKDPPGAP 89

BLAST of Sed0004700 vs. ExPASy TrEMBL
Match: A0A5N6L638 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_027045 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 3  SVANRHAIMP-PPLVSTLSINRYKYVEIDAFRPTSPGHSPGVGHDGPP 50
          SVA    + P PP   + S+NRYK +E DAFRPT+PGHSPGVGH  PP
Sbjct: 26 SVAAARPVKPKPPSTISFSVNRYKMIESDAFRPTTPGHSPGVGHRDPP 73

BLAST of Sed0004700 vs. TAIR 10
Match: AT2G35612.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 5.4e-06
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 21 INRYKYVEIDAFRPTSPGHSPGVGHDGPPGAP 53
          INR+K +E DAFRPT  G S G+GH  PPGAP
Sbjct: 55 INRFKNIEQDAFRPTHQGPSQGIGHKNPPGAP 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608019.13.3e-1376.47Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6591857.12.0e-1077.08Precursor of CEP4, partial [Cucurbita argyrosperma subsp. sororia][more]
OMP07954.12.1e-0765.22hypothetical protein CCACVL1_01186 [Corchorus capsularis][more]
OAY29952.13.5e-0772.50hypothetical protein MANES_15G184800v8 [Manihot esculenta][more]
KAF8033451.17.9e-0770.00hypothetical protein BT93_D2151 [Corymbia citriodora subsp. variegata][more]
Match NameE-valueIdentityDescription
Q3EBM67.6e-0565.63Precursor of CEP4 OS=Arabidopsis thaliana OX=3702 GN=CEP4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KWX01.6e-1074.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G244900 PE=3 SV=1[more]
A0A1R3KLK51.0e-0765.22Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_01186 PE=4 ... [more]
A0A2N9H1U71.0e-0772.73Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36368 PE=3 SV=1[more]
A0A2C9UJ231.7e-0772.50Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G184800 PE=3 SV=... [more]
A0A5N6L6381.1e-0660.42Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_027045 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G35612.15.4e-0665.63FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004700.1Sed0004700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902025 nitrate import
biological_process GO:1901371 regulation of leaf morphogenesis
biological_process GO:2000280 regulation of root development
biological_process GO:0007165 signal transduction
cellular_component GO:0005576 extracellular region
molecular_function GO:0005179 hormone activity