Sed0004582 (gene) Chayote v1

Overview


Name	Sed0004582
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Gibberellin-regulated family protein
Location	LG01: 18633871 .. 18636202 (-)
RNA-Seq Expression	Sed0004582
Synteny	Sed0004582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATAACTTTTAAAAAAATTTGGAGTTTTTCATTACAATTCTCTCATGGCCACTTCTCTTCTTTCCAAACCTCTCTTCACTTTTATTTTCATCTCTCTTTTTGTAGCTTACTTTGTTGGTGCTCATGATCATGAAATTGTAAGCTAATTTTTTTAATCTAACTAATTTAATCCCTCTAAATCAAGAAATTAAACTCTTTTTTTTTTCTTTTTAATAAAGATTTTGTAATAATATATGAATTGCAGGTGAACTCAATGGATGGTGTTGCTGCTGATCCTACTAAGATTCAAAACATTGGTAAACTATAAACATTTGATTTGATTTTTTATGTTTATTTTAAACTTATATTAGTTTTCTGACAACTTTTCTAGTTAGATTACTTAATGGTAGAAAAATGGGAATAATTATGAAAAGAATGATGTTCTGTTATGAAAAGAATGACGTTCTTACTGTTTATTATTCTCTTCTACCATAAATACTTTTTATTTTCTCTACACCTATTGATTTATTTTTCATAATTATTTTCTCTTCATATATTCATTATCTTTGCCTTCTTACTTTATATACAAATAATTATTCTCATTTATAATCTTCTTTCTTATAATCATTCTTTCTTCTTACTCTTGAATATAATTTTCTTCTTTCTTTGTAATAGTCTTCGTCTGTGTTAGGAGAATATTAATGTTTTTTGGATTGTATTTTTGAAAAATGCGTAAAAGTCAACCCCTTGTCATCAAATATAGTCTTATTTTTCATTTTGAGTTTTCTCTTATTTCATATAATGAAAAGTTTAACAAAAATATTTGATAGCTAGTTTTCTTTTGTTTTTGTTTTTGTTTTTCTTTTTCATTAAATAAAAAACATATATTTGATAACCATTTGATTTTCCTCCTCTCTAAAATTTTGAATTAAGATATAATAACTTTTAAAAACTAAATATTATATATTCTTTTAGAAATTTATTATGTATTTTATAAGTAAGAAAAGATAAAAAAATAATACTACTATTTATGCATGAAAAGAAAGAGGAATATATAAAAACCAGAAATGAGAAACTTCCAAAACAGAAATTTTGAAAATGTTTTCTATAAGCAAAAAAAAAAAAAAAAAATCTAAAATTGATAATTTAATATACATTCTTTAAAACAAGAAATATGAACAATCACCCTTTCTAAATACATGCTAGCTTTTTGGTAAATTTTGGTAATGCATTTATATGAAATGATTCTAAAATTGTATAAGAAAACCAAAAAAAAAAAAAAAAAAATCATTCTCTTCTTCTAGGCCTTTTTTTATAAAAAAAAAAAAAAGGCTTTTAAAAAATTTACACAATTTTTATCTTTCTTTTACTGATAAAATGTATGGAAAATATTTATAACATAAACATGAAACAAATTTTTTTAATATATGATTATAACTAATTGGCAAGTTTTCTTTTAGCCTTTTCTTTTTACTCTTTGCCTTCTCCTCCCCCTCCCTTCTTCTTCTTTAATAAAATTCACATATCCCTTTTCAAAAAAAAAAAAAACCATTAACTATTAATTTCATGTAGAACTTTTATTTCATAATTTTAGATTTTTTAGAATAAAAAAATATATATTTACCAAAACATTTTTTTTATAATAATTTTTTACAAGGGTAAACAAGCAACAACCAAATACAATATTTATATTTTGTAAAGATAAAACTAAAAGCATAAAGAATACCAACCAAATAAAACATTTCTATTTTTTATGGATAAGATACTAAAAATATTATTTGTATTTCAATAATACTATGAGATTATTGGATATAAACTTAGTAGACATAGCACCAACCAATGATATTGATTTTGGCTTCATTAATAGTTTTTTTTTTCCTTATTTATTGATATTGTTTGTGTTTGTTCAATAATACATGAGTGTTGAACTCATAACCTCTTAATTATTGAATTGTATTTAACATTTTTAGAGTACTATTCTTTTAGGGTTCTATTTTTTTTAGCATTTGAAATTTAAAAATAATAATAATAATAATAATTCTTGGTAAAAAATTGAACATTTTAATTGTGTTTTTCATCAGATTGTGGAGGAGCTTGTGCATCAAGGTGCAAATTATCTTCAAGGCCAAACCTTTGCAAGAGGGCATGCGGCACATGCTGTGCACGTTGCAGGTGCGTGCCCCCGGGCACCTCCGGCGGCTACGAAACCTGCCCGTGCTACGCTCAGTTGACAACCCACGGCGGCCGGCGAAAGTGCCCCTAAATAAAAACCCCAGCTGTTCTTTACATAAATATTTCTGCAGCATGCAAAAGTCCATAATCTCTATCACTGTTATATGTTCATGTGTGTG

mRNA sequence

GCAATAACTTTTAAAAAAATTTGGAGTTTTTCATTACAATTCTCTCATGGCCACTTCTCTTCTTTCCAAACCTCTCTTCACTTTTATTTTCATCTCTCTTTTTGTAGCTTACTTTGTTGGTGCTCATGATCATGAAATTGTGAACTCAATGGATGGTGTTGCTGCTGATCCTACTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCATCAAGGTGCAAATTATCTTCAAGGCCAAACCTTTGCAAGAGGGCATGCGGCACATGCTGTGCACGTTGCAGGTGCGTGCCCCCGGGCACCTCCGGCGGCTACGAAACCTGCCCGTGCTACGCTCAGTTGACAACCCACGGCGGCCGGCGAAAGTGCCCCTAAATAAAAACCCCAGCTGTTCTTTACATAAATATTTCTGCAGCATGCAAAAGTCCATAATCTCTATCACTGTTATATGTTCATGTGTGTG

Coding sequence (CDS)

ATGGCCACTTCTCTTCTTTCCAAACCTCTCTTCACTTTTATTTTCATCTCTCTTTTTGTAGCTTACTTTGTTGGTGCTCATGATCATGAAATTGTGAACTCAATGGATGGTGTTGCTGCTGATCCTACTAAGATTCAAAACATTGATTGTGGAGGAGCTTGTGCATCAAGGTGCAAATTATCTTCAAGGCCAAACCTTTGCAAGAGGGCATGCGGCACATGCTGTGCACGTTGCAGGTGCGTGCCCCCGGGCACCTCCGGCGGCTACGAAACCTGCCCGTGCTACGCTCAGTTGACAACCCACGGCGGCCGGCGAAAGTGCCCCTAA

Protein sequence

MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP

Homology

[Close]

BLAST of Sed0004582 vs. NCBI nr
Match: XP_022139249.1 (gibberellin-regulated protein 11-like [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-38
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S+LSKPL T +F+SL V  FVGAH+      ++G  ADPTKIQNIDCGGACA RCKL
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHE-----KVNGTTADPTKIQNIDCGGACAMRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRPNLCKRACGTCCARC CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  SSRPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Sed0004582 vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.7 bits (426), Expect = 2.8e-38
Identity = 82/108 (75.93%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S LSK L T + +SL V + VGA D   VNS+ GVAA P  IQ+IDCGGACASRCKL
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVGADDK--VNSIHGVAAHPANIQSIDCGGACASRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRP+LCKRACGTCCARC CVPPGTSGGYETCPCYA +TTHGGRRKCP
Sbjct: 61  SSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Sed0004582 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 8.0e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S LSK L T + +SL V + V A   E VNS+ GVAA P  IQ+IDCGGACASRCKL
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAA--DEEVNSIHGVAAHPANIQSIDCGGACASRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRPNLCKRACGTCCARC CVPPGTSGGYETCPCYA LTTHGGRRKCP
Sbjct: 61  SSRPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Sed0004582 vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S LSK L T + +SL V + VGA   E VNS+ GVAA P  +Q+IDCGGACASRCKL
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGA--DEKVNSIHGVAAHPANMQSIDCGGACASRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRP+LCKRACGTCCARC CVPPGTSGGYETCPCYA +TTHGGRRKCP
Sbjct: 61  SSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Sed0004582 vs. NCBI nr
Match: KAG6608594.1 (Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-37
Identity = 82/108 (75.93%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S LSK L T + +SL V + V A   E VNS+ GVAA P  IQ+IDCGGACASRCKL
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVAA--DEKVNSIHGVAAHPANIQSIDCGGACASRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRP+LCKRACGTCCARC CVPPGTSGGYETCPCYA LTTHGGRRKCP
Sbjct: 61  SSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Sed0004582 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-28
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 6   LSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPN 65
           +SK LF  + +SL +   V +   + V S + ++      + IDCGGACA+RC+LSSRP 
Sbjct: 3   ISKALFASLLLSLLLLEQVQSIQTDQVTS-NAISEAAYSYKKIDCGGACAARCRLSSRPR 62

Query: 66  LCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           LC RACGTCCARC CVPPGTSG  ETCPCYA LTTHG +RKCP
Sbjct: 63  LCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Sed0004582 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-25
Identity = 59/103 (57.28%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 6   LSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPN 65
           +SK L   + ISL V   V A D E     +G A      + IDCG AC +RC+LS RP 
Sbjct: 3   ISKALIASLLISLLVLQLVQA-DVENSQKKNGYA------KKIDCGSACVARCRLSRRPR 62

Query: 66  LCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           LC RACGTCC RC CVPPGT G Y+ C CYA LTTHGGRRKCP
Sbjct: 63  LCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Sed0004582 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-24
Identity = 58/99 (58.59%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 10  LFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPNLCKR 69
           L   + ISL V  FV A   ++V S D           IDC   C  RC LSSRPNLC R
Sbjct: 7   LLASLLISLLVLDFVHA---DMVTSNDA--------PKIDCNSRCQERCSLSSRPNLCHR 66

Query: 70  ACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           ACGTCCARC CV PGTSG Y+ CPCY  LTTHGGRRKCP
Sbjct: 67  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Sed0004582 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.3e-21
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 39  AADPTK----IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCRCVPPGTSGGYETCPC 98
           AAD  K    +  IDCGG C  RC  SSR  LC RAC +CC+RC CVPPGTSG    CPC
Sbjct: 26  AADGAKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPC 85

Query: 99  YAQLTTHGGRRKCP 109
           YA +TTHGGR KCP
Sbjct: 86  YASITTHGGRLKCP 99

[Close]

BLAST of Sed0004582 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-20
Identity = 48/95 (50.53%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 14  IFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPNLCKRACGT 73
           + + LF       H H   +S  G       +  IDCGG C  RC  SSRPNLC RAC +
Sbjct: 10  LLLILFCLTTFELHVHAAEDSQVGEG-----VVKIDCGGRCKGRCSKSSRPNLCLRACNS 69

Query: 74  CCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           CC RC CVPPGT+G +  CPCYA +TT GGR KCP
Sbjct: 70  CCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Sed0004582 vs. ExPASy TrEMBL
Match: A0A6J1CCE1 (gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC111010205 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S+LSKPL T +F+SL V  FVGAH+      ++G  ADPTKIQNIDCGGACA RCKL
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHE-----KVNGTTADPTKIQNIDCGGACAMRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRPNLCKRACGTCCARC CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  SSRPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Sed0004582 vs. ExPASy TrEMBL
Match: A0A6J1FJ01 (gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445908 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.9e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S LSK L T + +SL V + V A   E VNS+ GVAA P  IQ+IDCGGACASRCKL
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAA--DEEVNSIHGVAAHPANIQSIDCGGACASRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRPNLCKRACGTCCARC CVPPGTSGGYETCPCYA LTTHGGRRKCP
Sbjct: 61  SSRPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Sed0004582 vs. ExPASy TrEMBL
Match: A0A6J1J2A8 (gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MATSLLSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKL 60
           MA S LSK L T + +SL V + VGA   E VNS+ GVAA P  +Q+IDCGGACASRCKL
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGA--DEKVNSIHGVAAHPANMQSIDCGGACASRCKL 60

Query: 61  SSRPNLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           SSRP+LCKRACGTCCARC CVPPGTSGGYETCPCYA +TTHGGRRKCP
Sbjct: 61  SSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Sed0004582 vs. ExPASy TrEMBL
Match: A0A0A0LDK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.1e-32
Identity = 75/104 (72.12%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 6   LSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAA-DPTKIQNIDCGGACASRCKLSSRP 65
           L K +   +  SL V  FV A D  +V    GVAA  PTK QNIDCGGACASRCKLSSRP
Sbjct: 3   LPKIIVCLLASSLLVLCFVEADDQMVV----GVAASSPTKTQNIDCGGACASRCKLSSRP 62

Query: 66  NLCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           NLC RACGTCCARC CVPPGTSG YE CPCYA LTTHGGRRKCP
Sbjct: 63  NLCHRACGTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

[Close]

BLAST of Sed0004582 vs. ExPASy TrEMBL
Match: A0A5D3E7E4 (Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008070 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 70/95 (73.68%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 14  IFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPNLCKRACGT 73
           + +SL V  FV A D  +     GVAA PT  QNI+CGGACASRCKLSSRPNLCKRACGT
Sbjct: 11  VAMSLLVLCFVEADDMVV-----GVAASPTLTQNINCGGACASRCKLSSRPNLCKRACGT 70

Query: 74  CCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           CCARC CVPPGTSG Y  CPCYA+LTTHGGRRKCP
Sbjct: 71  CCARCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Sed0004582 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 114.4 bits (285), Expect = 5.7e-26
Identity = 59/103 (57.28%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 6   LSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPN 65
           +SK L   + ISL V   V A D E     +G A      + IDCG AC +RC+LS RP 
Sbjct: 3   ISKALIASLLISLLVLQLVQA-DVENSQKKNGYA------KKIDCGSACVARCRLSRRPR 62

Query: 66  LCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           LC RACGTCC RC CVPPGT G Y+ C CYA LTTHGGRRKCP
Sbjct: 63  LCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Sed0004582 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 113.6 bits (283), Expect = 9.8e-26
Identity = 57/103 (55.34%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 6   LSKPLFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPN 65
           +SK L   + ISL V   V A ++      +G A      + IDCG AC +RC+LS RP 
Sbjct: 3   ISKALIASLLISLLVLQLVQADENS--QKKNGYA------KKIDCGSACVARCRLSRRPR 62

Query: 66  LCKRACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           LC RACGTCC RC CVPPGT G Y+ C CYA LTTHGGRRKCP
Sbjct: 63  LCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Sed0004582 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-25
Identity = 58/99 (58.59%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 10  LFTFIFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPNLCKR 69
           L   + ISL V  FV A   ++V S D           IDC   C  RC LSSRPNLC R
Sbjct: 7   LLASLLISLLVLDFVHA---DMVTSNDA--------PKIDCNSRCQERCSLSSRPNLCHR 66

Query: 70  ACGTCCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           ACGTCCARC CV PGTSG Y+ CPCY  LTTHGGRRKCP
Sbjct: 67  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Sed0004582 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 100.9 bits (250), Expect = 6.6e-22
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 39  AADPTK----IQNIDCGGACASRCKLSSRPNLCKRACGTCCARCRCVPPGTSGGYETCPC 98
           AAD  K    +  IDCGG C  RC  SSR  LC RAC +CC+RC CVPPGTSG    CPC
Sbjct: 26  AADGAKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPC 85

Query: 99  YAQLTTHGGRRKCP 109
           YA +TTHGGR KCP
Sbjct: 86  YASITTHGGRLKCP 99

[Close]

BLAST of Sed0004582 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 100.5 bits (249), Expect = 8.6e-22
Identity = 48/95 (50.53%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 14  IFISLFVAYFVGAHDHEIVNSMDGVAADPTKIQNIDCGGACASRCKLSSRPNLCKRACGT 73
           + + LF       H H   +S  G       +  IDCGG C  RC  SSRPNLC RAC +
Sbjct: 10  LLLILFCLTTFELHVHAAEDSQVGEG-----VVKIDCGGRCKGRCSKSSRPNLCLRACNS 69

Query: 74  CCARCRCVPPGTSGGYETCPCYAQLTTHGGRRKCP 109
           CC RC CVPPGT+G +  CPCYA +TT GGR KCP
Sbjct: 70  CCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of Sed0004582 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139249.1	2.1e-38	74.07	gibberellin-regulated protein 11-like [Momordica charantia]	[more]
XP_023525231.1	2.8e-38	75.93	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022940222.1	8.0e-38	76.85	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
XP_022982305.1	2.3e-37	75.00	gibberellin-regulated protein 1-like [Cucurbita maxima]	[more]
KAG6608594.1	2.3e-37	75.93	Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2...	[more]

BLAST of Sed0004582 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	6.0e-28	58.25	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	8.1e-25	57.28	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	5.2e-24	58.59	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46688	9.3e-21	62.16	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
P46687	1.2e-20	50.53	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]

BLAST of Sed0004582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCE1	1.0e-38	74.07	gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FJ01	3.9e-38	76.85	gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6J1J2A8	1.1e-37	75.00	gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179...	[more]
A0A0A0LDK8	7.1e-32	72.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872170 PE=3 SV=1	[more]
A0A5D3E7E4	2.7e-31	73.68	Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Sed0004582 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.1	5.7e-26	57.28	GAST1 protein homolog 1	[more]
AT1G75750.2	9.8e-26	55.34	GAST1 protein homolog 1	[more]
AT2G18420.1	3.7e-25	58.59	Gibberellin-regulated family protein	[more]
AT4G09610.1	6.6e-22	62.16	GAST1 protein homolog 2	[more]
AT4G09600.1	8.6e-22	50.53	GAST1 protein homolog 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 49..108 e-value: 1.0E-20 score: 73.6
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 7..108
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 7..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004582.1	Sed0004582.1	mRNA