Sed0004571 (gene) Chayote v1

Overview


Name	Sed0004571
Type	gene
Organism	Sechium edule (Chayote v1)
Description	PRA1 family protein
Location	LG12: 6349527 .. 6350649 (-)
RNA-Seq Expression	Sed0004571
Synteny	Sed0004571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTTTATATTAATTTTATATAATAAATCACAAATTGGAATCTTCGTATTTCCGGACTTCACTTCCAATCTCTCGGAGCTCCGGCCAAAATTTCCAATGTCGACCGCCGAATTCGCCGTCACTTTCAAGGAAGCCGGCCGATCCGTGATCGCCACGCGCCGTCCATGGCGGCAATTCCTCGACCCATCGGCGCTGAGCCTCCCTTCTTCCCTCTCCGACGCGACGGCTCGGATTTCTCAGAACCTGACCCGTTTCCTCTCCAATTACTGTCTCGTCGTCTTGATCCTCATCTTTCTCGGCCTCATCTACCATCCATTCTCCATCATCGTCTTCTTGCTCGTCTCCGTCGCCTGGTTCTTCCTCTACTTCTCTCGCGATGACCCACTTAGGGTTTTTGGCTTTGTATTGGACGATTTGGTTTTGGTCATCGTTCTTGGCTTGGCCACCGGATTTGCCCTGGCTTTCACTGGGGTTTTCTTGAATGTCCTGATTTCGCTCGCAATTGGGGCTGTGGTGGTTTGTTTTCACGCGGCTTTGAGGAGCGTTGAGGATGTTTTTGGGGATTTGCAAGACCCTTTTGGGGATGCGCTTTTGGAGAGTCCGAGAGGTGATTATAGCGGAATTTGATTGGATTTAACCATTTGATGTTCTGTTTTTTTTTGTTTTCAATTGCTTTAGTTGGTGGTTGGTTTATATACTGGTGTTGTTAGATGAATGTACATTGCAGAATACAATGAATTGCAGAGGAGTATTCATCTCCATTATGCTAAGATTCTTGCGCCTTATTGTTCTTGTTTTTACTTTGTTGGAGTATTTGGTGTTGTGTTTGATTTAATTGCATCTTCTATAGGCTCCTATTTGTCTGTCTATTTGATTGGAATTGGTCACTTGGGATGTATTTTTGTTGTATGTTTACCTTTGAATTTGTAGAATCTAAGTTAGCCACTGAATTTGATTGAGCTAACAAACCGTTGATTTTCTTTTGGGTTTTGATCATATAAAATCCTAACCGTAGTTAGATGTACTCGTTTAAAAGGTAACCTACCTGATTGATATGCTTGATTGTGTTTGGATTTGTTGTCCTTGTTAACAAAGTTTAATGAAGAGAAGAAAGAAGTTTAG

mRNA sequence

CCCTTTTATATTAATTTTATATAATAAATCACAAATTGGAATCTTCGTATTTCCGGACTTCACTTCCAATCTCTCGGAGCTCCGGCCAAAATTTCCAATGTCGACCGCCGAATTCGCCGTCACTTTCAAGGAAGCCGGCCGATCCGTGATCGCCACGCGCCGTCCATGGCGGCAATTCCTCGACCCATCGGCGCTGAGCCTCCCTTCTTCCCTCTCCGACGCGACGGCTCGGATTTCTCAGAACCTGACCCGTTTCCTCTCCAATTACTGTCTCGTCGTCTTGATCCTCATCTTTCTCGGCCTCATCTACCATCCATTCTCCATCATCGTCTTCTTGCTCGTCTCCGTCGCCTGGTTCTTCCTCTACTTCTCTCGCGATGACCCACTTAGGGTTTTTGGCTTTGTATTGGACGATTTGGTTTTGGTCATCGTTCTTGGCTTGGCCACCGGATTTGCCCTGGCTTTCACTGGGGTTTTCTTGAATGTCCTGATTTCGCTCGCAATTGGGGCTGTGGTGGTTTGTTTTCACGCGGCTTTGAGGAGCGTTGAGGATGTTTTTGGGGATTTGCAAGACCCTTTTGGGGATGCGCTTTTGGAGAGTCCGAGAGGTGATTATAGCGGAATTTGATTGGATTTAACCATTTGATGTTCTGTTTTTTTTTGTTTTCAATTGCTTTAGTTGGTGGTTGGTTTATATACTGGTGTTGTTAGATGAATGTACATTGCAGAATACAATGAATTGCAGAGGAGTATTCATCTCCATTATGCTAAGATTCTTGCGCCTTATTGTTCTTGTTTTTACTTTGTTGGAGTATTTGGTGTTGTGTTTGATTTAATTGCATCTTCTATAGGCTCCTATTTGTCTGTCTATTTGATTGGAATTGGTCACTTGGGATGTATTTTTGTTGTATGTTTACCTTTGAATTTGTAGAATCTAAGTTAGCCACTGAATTTGATTGAGCTAACAAACCGTTGATTTTCTTTTGGGTTTTGATCATATAAAATCCTAACCGTAGTTAGATGTACTCGTTTAAAAGGTAACCTACCTGATTGATATGCTTGATTGTGTTTGGATTTGTTGTCCTTGTTAACAAAGTTTAATGAAGAGAAGAAAGAAGTTTAG

Coding sequence (CDS)

ATGTCGACCGCCGAATTCGCCGTCACTTTCAAGGAAGCCGGCCGATCCGTGATCGCCACGCGCCGTCCATGGCGGCAATTCCTCGACCCATCGGCGCTGAGCCTCCCTTCTTCCCTCTCCGACGCGACGGCTCGGATTTCTCAGAACCTGACCCGTTTCCTCTCCAATTACTGTCTCGTCGTCTTGATCCTCATCTTTCTCGGCCTCATCTACCATCCATTCTCCATCATCGTCTTCTTGCTCGTCTCCGTCGCCTGGTTCTTCCTCTACTTCTCTCGCGATGACCCACTTAGGGTTTTTGGCTTTGTATTGGACGATTTGGTTTTGGTCATCGTTCTTGGCTTGGCCACCGGATTTGCCCTGGCTTTCACTGGGGTTTTCTTGAATGTCCTGATTTCGCTCGCAATTGGGGCTGTGGTGGTTTGTTTTCACGCGGCTTTGAGGAGCGTTGAGGATGTTTTTGGGGATTTGCAAGACCCTTTTGGGGATGCGCTTTTGGAGAGTCCGAGAGGTGATTATAGCGGAATTTGA

Protein sequence

MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI

Homology

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BLAST of Sed0004571 vs. NCBI nr
Match: XP_008438582.1 (PREDICTED: PRA1 family protein D isoform X2 [Cucumis melo] >XP_008438583.1 PREDICTED: PRA1 family protein D isoform X2 [Cucumis melo] >XP_031739235.1 PRA1 family protein D [Cucumis sativus] >KAA0049304.1 PRA1 family protein D isoform X3 [Cucumis melo var. makuwa] >TYK17254.1 PRA1 family protein D isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.8e-78
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

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BLAST of Sed0004571 vs. NCBI nr
Match: XP_038877088.1 (PRA1 family protein D [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 6.4e-77
Identity = 158/176 (89.77%), Postives = 165/176 (93.75%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSS SDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSFSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           +L+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDPLRVFGF L DLVLVI+LGLATG A
Sbjct: 61  LLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPLRVFGFELGDLVLVIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GDLQDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDLQDPFGDALLESPRGDYSGI 176

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BLAST of Sed0004571 vs. NCBI nr
Match: KGN56938.2 (hypothetical protein Csa_011703 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 8.4e-77
Identity = 156/174 (89.66%), Postives = 165/174 (94.83%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYS 175
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRGDYS
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYS 174

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BLAST of Sed0004571 vs. NCBI nr
Match: XP_022147270.1 (PRA1 family protein D [Momordica charantia])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 156/176 (88.64%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAV+FKEAGRSVIATRRPWR+FLDP+ALSLPSSLSDAT +ISQNLTRFLSNYCL+
Sbjct: 1   MSTAEFAVSFKEAGRSVIATRRPWREFLDPTALSLPSSLSDATTKISQNLTRFLSNYCLL 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           +L+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDPLRVFGFVLDDLVLVI+LGLATG A
Sbjct: 61  ILLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPLRVFGFVLDDLVLVIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVV  HAALR  ED+ GDLQDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVSLHAALRGTEDLLGDLQDPFGDALLESPRGDYSGI 176

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BLAST of Sed0004571 vs. NCBI nr
Match: XP_016899069.1 (PREDICTED: PRA1 family protein D isoform X3 [Cucumis melo])

HSP 1 Score: 290.8 bits (743), Expect = 7.8e-75
Identity = 153/171 (89.47%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRG 172
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRG
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRG 171

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BLAST of Sed0004571 vs. ExPASy Swiss-Prot
Match: P93829 (PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-33
Identity = 83/174 (47.70%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLI 70
           KE  +S+    RPW  FLD SA S PSS++DAT R++QNLT F  NY +++ IL+ L LI
Sbjct: 10  KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 71  YHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDD-LVLVIVLGLATGFALAFTGVFLN 130
             P +I+ F+ V +AWFFLYF+R++PL +FGF +DD +V V+++GL+ G +L  TGV+L 
Sbjct: 70  TRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIG-SLVTTGVWLR 129

Query: 131 VLISLAIGAVVVCFHAALRSVED-VFGDLQDPFGDALLES------PRGDYSGI 177
            L ++  G +V+  HAALR  +D V  DL+ P+G  L  S       RGDYSGI
Sbjct: 130 ALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

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BLAST of Sed0004571 vs. ExPASy Swiss-Prot
Match: Q9FRR1 (PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-27
Identity = 71/164 (43.29%), Postives = 104/164 (63.41%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLI 70
           K+  +S+I T RPWR+ LD SALSLP    +A A +  N++ F  NY L VL ++FLGLI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 71  YHPFSIIVFLLVSVAWFFLYFSRD--DPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFL 130
           YHP S+I F++V + W  LYFSRD  D + + G  +DD +++++L L T  AL +T V  
Sbjct: 97  YHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGE 156

Query: 131 NVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGD 173
           NVL+SL IG ++V  H A R+ +D+F D +      L+ +  G+
Sbjct: 157 NVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSGN 200

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BLAST of Sed0004571 vs. ExPASy Swiss-Prot
Match: Q9LIC6 (PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-24
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 18  IATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLIYHPFSII 77
           +ATRR WR   D  ++ LP  +SDA  RI  NL  F  NY +VVLI+IF  LI+HP S+I
Sbjct: 33  LATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLI 92

Query: 78  VFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFLNVLISLAIG 137
           VF ++ V W FLYF RD+P+++F F +DD  ++IVL + T   L  T    N++ +L  G
Sbjct: 93  VFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTG 152

Query: 138 AVVVCFHAALRSVEDVFGD 157
           AV+V  H+ +R  ED+F D
Sbjct: 153 AVLVLIHSVVRKTEDLFLD 171

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BLAST of Sed0004571 vs. ExPASy Swiss-Prot
Match: Q9C889 (PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.5e-23
Identity = 65/152 (42.76%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 5   EFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLIL 64
           E+    K   +S +ATRRPW+   D  +++LP    DA +RI  NL  F +NY + VL +
Sbjct: 20  EYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFI 79

Query: 65  IFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFT 124
           +FL L+YHP S+IV  ++ V W FLYF RD+PL VFG+ +DD  ++I L + T   L  T
Sbjct: 80  LFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLT 139

Query: 125 GVFLNVLISLAIGAVVVCFHAALRSVEDVFGD 157
               N+L SL   AV+V  HAA+R  +++F D
Sbjct: 140 HATSNILGSLLTAAVLVLIHAAVRRSDNLFLD 171

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BLAST of Sed0004571 vs. ExPASy Swiss-Prot
Match: Q9FZ63 (PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.1e-22
Identity = 60/140 (42.86%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 15  RSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLIYHPF 74
           RS +ATRRPW+Q LD  + + P  L+    RI  N   F +NY +VVL  +FL LI++PF
Sbjct: 30  RSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPF 89

Query: 75  SIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFLNVLISL 134
           S++V L +  AW FLYF RD+PL VF   +D  +++I++ + T   L  T   LN+ +++
Sbjct: 90  SLLVLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAI 149

Query: 135 AIGAVVVCFHAALRSVEDVF 155
             GA+ V  HAA+R  ED+F
Sbjct: 150 VAGALAVLSHAAVRKTEDLF 169

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BLAST of Sed0004571 vs. ExPASy TrEMBL
Match: A0A1S3AXE4 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Sed0004571 vs. ExPASy TrEMBL
Match: A0A5D3D201 (PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001060 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Sed0004571 vs. ExPASy TrEMBL
Match: A0A0A0L7A7 (PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G143550 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 158/176 (89.77%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Sed0004571 vs. ExPASy TrEMBL
Match: A0A6J1CZP3 (PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111016265 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.3e-77
Identity = 156/176 (88.64%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAV+FKEAGRSVIATRRPWR+FLDP+ALSLPSSLSDAT +ISQNLTRFLSNYCL+
Sbjct: 1   MSTAEFAVSFKEAGRSVIATRRPWREFLDPTALSLPSSLSDATTKISQNLTRFLSNYCLL 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           +L+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDPLRVFGFVLDDLVLVI+LGLATG A
Sbjct: 61  ILLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPLRVFGFVLDDLVLVIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGDYSGI 177
           LA TGVF+NVLISLAIGAVVV  HAALR  ED+ GDLQDPFGDALLESPRGDYSGI
Sbjct: 121 LALTGVFVNVLISLAIGAVVVSLHAALRGTEDLLGDLQDPFGDALLESPRGDYSGI 176

[Close]

BLAST of Sed0004571 vs. ExPASy TrEMBL
Match: A0A1S4DSV7 (PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.8e-75
Identity = 153/171 (89.47%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MSTAEFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLV 60
           MSTAEFAVTFKEAGRSVIATRRPWR+FLDPSALSLPSSLSDAT RIS NLTRFLSNYCLV
Sbjct: 1   MSTAEFAVTFKEAGRSVIATRRPWREFLDPSALSLPSSLSDATTRISHNLTRFLSNYCLV 60

Query: 61  VLILIFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFA 120
           VL+LIFLGLIYHPFS+IVFLLV VAWFFLYFSRDDP+RVFGF LDDLVL+I+LGLATG A
Sbjct: 61  VLLLIFLGLIYHPFSMIVFLLVFVAWFFLYFSRDDPIRVFGFELDDLVLIIILGLATGLA 120

Query: 121 LAFTGVFLNVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRG 172
           LA TGVF+NVLISLAIGAVVVC HAALRS ED+ GD+QDPFGDALLESPRG
Sbjct: 121 LALTGVFVNVLISLAIGAVVVCLHAALRSTEDLVGDMQDPFGDALLESPRG 171

[Close]

BLAST of Sed0004571 vs. TAIR 10
Match: AT1G04260.1 (CAMV movement protein interacting protein 7 )

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-34
Identity = 83/174 (47.70%), Postives = 116/174 (66.67%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLI 70
           KE  +S+    RPW  FLD SA S PSS++DAT R++QNLT F  NY +++ IL+ L LI
Sbjct: 10  KETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLI 69

Query: 71  YHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDD-LVLVIVLGLATGFALAFTGVFLN 130
             P +I+ F+ V +AWFFLYF+R++PL +FGF +DD +V V+++GL+ G +L  TGV+L 
Sbjct: 70  TRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIG-SLVTTGVWLR 129

Query: 131 VLISLAIGAVVVCFHAALRSVED-VFGDLQDPFGDALLES------PRGDYSGI 177
            L ++  G +V+  HAALR  +D V  DL+ P+G  L  S       RGDYSGI
Sbjct: 130 ALTTVGFGVLVLILHAALRGTDDLVSDDLESPYGPMLSTSGGGNDGARGDYSGI 182

[Close]

BLAST of Sed0004571 vs. TAIR 10
Match: AT1G08770.1 (prenylated RAB acceptor 1.E )

HSP 1 Score: 124.4 bits (311), Expect = 9.0e-29
Identity = 71/164 (43.29%), Postives = 104/164 (63.41%), Query Frame = 0


Query: 11  KEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLI 70
           K+  +S+I T RPWR+ LD SALSLP    +A A +  N++ F  NY L VL ++FLGLI
Sbjct: 37  KQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLI 96

Query: 71  YHPFSIIVFLLVSVAWFFLYFSRD--DPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFL 130
           YHP S+I F++V + W  LYFSRD  D + + G  +DD +++++L L T  AL +T V  
Sbjct: 97  YHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGE 156

Query: 131 NVLISLAIGAVVVCFHAALRSVEDVFGDLQDPFGDALLESPRGD 173
           NVL+SL IG ++V  H A R+ +D+F D +      L+ +  G+
Sbjct: 157 NVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSAGSGN 200

[Close]

BLAST of Sed0004571 vs. TAIR 10
Match: AT3G13720.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 114.4 bits (285), Expect = 9.4e-26
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 0


Query: 18  IATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLIYHPFSII 77
           +ATRR WR   D  ++ LP  +SDA  RI  NL  F  NY +VVLI+IF  LI+HP S+I
Sbjct: 33  LATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLI 92

Query: 78  VFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFLNVLISLAIG 137
           VF ++ V W FLYF RD+P+++F F +DD  ++IVL + T   L  T    N++ +L  G
Sbjct: 93  VFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTG 152

Query: 138 AVVVCFHAALRSVEDVFGD 157
           AV+V  H+ +R  ED+F D
Sbjct: 153 AVLVLIHSVVRKTEDLFLD 171

[Close]

BLAST of Sed0004571 vs. TAIR 10
Match: AT1G55190.1 (PRA1 (Prenylated rab acceptor) family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-24
Identity = 65/152 (42.76%), Postives = 93/152 (61.18%), Query Frame = 0


Query: 5   EFAVTFKEAGRSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLIL 64
           E+    K   +S +ATRRPW+   D  +++LP    DA +RI  NL  F +NY + VL +
Sbjct: 20  EYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFI 79

Query: 65  IFLGLIYHPFSIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFT 124
           +FL L+YHP S+IV  ++ V W FLYF RD+PL VFG+ +DD  ++I L + T   L  T
Sbjct: 80  LFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTVVMLLLT 139

Query: 125 GVFLNVLISLAIGAVVVCFHAALRSVEDVFGD 157
               N+L SL   AV+V  HAA+R  +++F D
Sbjct: 140 HATSNILGSLLTAAVLVLIHAAVRRSDNLFLD 171

[Close]

BLAST of Sed0004571 vs. TAIR 10
Match: AT1G17700.1 (prenylated RAB acceptor 1.F1 )

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23
Identity = 60/140 (42.86%), Postives = 88/140 (62.86%), Query Frame = 0


Query: 15  RSVIATRRPWRQFLDPSALSLPSSLSDATARISQNLTRFLSNYCLVVLILIFLGLIYHPF 74
           RS +ATRRPW+Q LD  + + P  L+    RI  N   F +NY +VVL  +FL LI++PF
Sbjct: 30  RSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPF 89

Query: 75  SIIVFLLVSVAWFFLYFSRDDPLRVFGFVLDDLVLVIVLGLATGFALAFTGVFLNVLISL 134
           S++V L +  AW FLYF RD+PL VF   +D  +++I++ + T   L  T   LN+ +++
Sbjct: 90  SLLVLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAI 149

Query: 135 AIGAVVVCFHAALRSVEDVF 155
             GA+ V  HAA+R  ED+F
Sbjct: 150 VAGALAVLSHAAVRKTEDLF 169

The following BLAST results are available for this feature:

BLAST of Sed0004571 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438582.1	5.8e-78	89.77	PREDICTED: PRA1 family protein D isoform X2 [Cucumis melo] >XP_008438583.1 PREDI...	[more]
XP_038877088.1	6.4e-77	89.77	PRA1 family protein D [Benincasa hispida]	[more]
KGN56938.2	8.4e-77	89.66	hypothetical protein Csa_011703 [Cucumis sativus]	[more]
XP_022147270.1	1.1e-76	88.64	PRA1 family protein D [Momordica charantia]	[more]
XP_016899069.1	7.8e-75	89.47	PREDICTED: PRA1 family protein D isoform X3 [Cucumis melo]	[more]

BLAST of Sed0004571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93829	2.0e-33	47.70	PRA1 family protein D OS=Arabidopsis thaliana OX=3702 GN=PRA1D PE=1 SV=1	[more]
Q9FRR1	1.3e-27	43.29	PRA1 family protein E OS=Arabidopsis thaliana OX=3702 GN=PRA1E PE=1 SV=1	[more]
Q9LIC6	1.3e-24	46.04	PRA1 family protein F3 OS=Arabidopsis thaliana OX=3702 GN=PRA1F3 PE=1 SV=1	[more]
Q9C889	5.5e-23	42.76	PRA1 family protein F2 OS=Arabidopsis thaliana OX=3702 GN=PRA1F2 PE=1 SV=1	[more]
Q9FZ63	2.1e-22	42.86	PRA1 family protein F1 OS=Arabidopsis thaliana OX=3702 GN=PRA1F1 PE=1 SV=1	[more]

BLAST of Sed0004571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AXE4	2.8e-78	89.77	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1	[more]
A0A5D3D201	2.8e-78	89.77	PRA1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G...	[more]
A0A0A0L7A7	2.8e-78	89.77	PRA1 family protein OS=Cucumis sativus OX=3659 GN=Csa_3G143550 PE=3 SV=1	[more]
A0A6J1CZP3	5.3e-77	88.64	PRA1 family protein OS=Momordica charantia OX=3673 GN=LOC111016265 PE=3 SV=1	[more]
A0A1S4DSV7	3.8e-75	89.47	PRA1 family protein OS=Cucumis melo OX=3656 GN=LOC103483647 PE=3 SV=1	[more]

BLAST of Sed0004571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04260.1	1.4e-34	47.70	CAMV movement protein interacting protein 7	[more]
AT1G08770.1	9.0e-29	43.29	prenylated RAB acceptor 1.E	[more]
AT3G13720.1	9.4e-26	46.04	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G55190.1	3.9e-24	42.76	PRA1 (Prenylated rab acceptor) family protein	[more]
AT1G17700.1	1.5e-23	42.86	prenylated RAB acceptor 1.F1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004895	Prenylated rab acceptor PRA1	PFAM	PF03208	PRA1	coord: 18..154 e-value: 2.0E-40 score: 137.7
IPR004895	Prenylated rab acceptor PRA1	PANTHER	PTHR19317	PRENYLATED RAB ACCEPTOR 1-RELATED	coord: 3..165
None	No IPR available	PANTHER	PTHR19317:SF81	PRA1 FAMILY PROTEIN D	coord: 3..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004571.1	Sed0004571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070192	chromosome organization involved in meiotic cell cycle
biological_process	GO:0000730	DNA recombinase assembly
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0042148	strand invasion
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000150	DNA strand exchange activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003697	single-stranded DNA binding