Sed0004563 (gene) Chayote v1

Overview


Name	Sed0004563
Type	gene
Organism	Sechium edule (Chayote v1)
Description	WD_REPEATS_REGION domain-containing protein
Location	LG05: 2565704 .. 2567533 (+)
RNA-Seq Expression	Sed0004563
Synteny	Sed0004563

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACGGAAGGGAGAGAAAAGATGGTGTTCTCTCGCTAATTGACAGGTACTTGAATCTTTGTAACATCTAGGAATTTAAAGGACATAACTACCCTTCATTCTAAAGAACACAAATGTGAAGTTTGTCGGCTGAAATTGATAAATTGGTTTTGTCAATTTGCATATTTTCATTTTGTTATACCATCCCAAAGTTATTGGAAAAGCTTAGTAAATTTTTCATGTAACCATGTGCTTTGGAAGTATTTTCAAATTTTCTTTGCCTTTCTCTTTCTTGATCATGATAAGTGCATAGAGTTTTTACCATCACTCATCAATCCTTGTCTCATTTTTTTTAAACAAGAAACAAAGAAGTACATGAAAAGAGACTAATGCTCAAAGTACAAAAATCATTGTCTCATTTTCAATGTCAATATCTCGTAATGTCATCCTGGTATTTGTTGTCGTTGTCTTGCTGCCTATGGTGATGCAGTCAGTGTTGGTAAATGTGTTGGTTGATATAACTAAATTTACCTAAAATCCATCGATTTAAACTTTTGGATTGATTGGTAGTTTAACATAATTTAACATGGTATCAGAGTAGGAGGTCATGAGTTCGAATCTCTGCCAAGTTATTTCCTCTCCAATTAAAACTAAATTCCACTTGTATAGGGTATTTCTCAAATTTCAAAGCCCACAAGTGAGGGGAGTGTTGTTTTCTCATTCTTTTGCATGTGGAAGATGACTTAGCCCAATTTATATTTGGTATGGGCTATGCCATCAAATGTCTAAGAGGTAAACAAACACTGCCAGGAAAGATAAAATGGCCCAAATTCCGCTTGGTAGAAAATGCCTCTGTTTGCCATTCCATCAAGATTGCTGGTCTGAAAGCATACAAACAGGCACACACATTTTGGTGGTTTGGTTTGGTTTAGTTTAGTTTAGTTTATATGCTCATATTCCTCCATCACTCTTTACCTAACATGTCATTGACACATTTTTTGGCTTGGAGTCTGTTCACTATCACCTTGCTATTTCGGGGAGTAAACGCCATCCTTCTTTTGTGATTATAGTTTGACAATCCATAGATGTTTTCTTTTGTAATTATTTTTCCTATAGAATATTTTTTTTAATGGATTTCATATATGACGGAAATTATTTCCGTTTCCCACAAAAAGTATACATGAGGTCAATGTGGCAATGACTTGTTAGTTATATAGGCTCCGTTTGATAACCATTTCATTTTTTGTTTTTTGTTTATGAAATTTAAGCCTATTTCTACTCAAATTTCCTACTACCGTGCTCCATCTTTCCTACAATATATTCATATTTCCTTAAGAAAGTAGCTGTATACTAACCAAATTTCAAAAATAAAAACAAACTTTTGGAAGCTACTTTTTTTTTTTTACAAATTTTTGTTTTGTTTCTTAAAATATAGGTAAGAGTAGATATCTAAATAAGAAAAAGGTTATGGTATAATAGTTGTTGTAGGCTTAAATTTCAAAAACGAAAAACAAAATGGTTATCAAACGGGACCATAGCAATTTGATTATTCGTCTTAGTTCTAATATTTTAATTCTTCTCTATTTGAAAATTTCAGATTGAAATTTGATCTAATCATGCAAGGAAATGATTTAAAAAGAGGACTTTTGTGTCTCTTAAAATTAAACAGCAGGACCATGGGGCAAAATAATGCTGACATTGATTTAAATGACATCCTCAGCTTAAGCTGCTTAACAACTAAAAGGAAAGATATAATGGAAACATTTCAAGGAATTATGAAATTTTCGGAAGATTTTTTGGATTTGATTGATGCGGCGGATATTACTGGACAAGCGGATATTGCCCTCTAA

mRNA sequence

ATGCACGGAAGGGAGAGAAAAGATGGTGTTCTCTCGCTAATTGACAGATTGAAATTTGATCTAATCATGCAAGGAAATGATTTAAAAAGAGGACTTTTGTGTCTCTTAAAATTAAACAGCAGGACCATGGGGCAAAATAATGCTGACATTGATTTAAATGACATCCTCAGCTTAAGCTGCTTAACAACTAAAAGGAAAGATATAATGGAAACATTTCAAGGAATTATGAAATTTTCGGAAGATTTTTTGGATTTGATTGATGCGGCGGATATTACTGGACAAGCGGATATTGCCCTCTAA

Coding sequence (CDS)

ATGCACGGAAGGGAGAGAAAAGATGGTGTTCTCTCGCTAATTGACAGATTGAAATTTGATCTAATCATGCAAGGAAATGATTTAAAAAGAGGACTTTTGTGTCTCTTAAAATTAAACAGCAGGACCATGGGGCAAAATAATGCTGACATTGATTTAAATGACATCCTCAGCTTAAGCTGCTTAACAACTAAAAGGAAAGATATAATGGAAACATTTCAAGGAATTATGAAATTTTCGGAAGATTTTTTGGATTTGATTGATGCGGCGGATATTACTGGACAAGCGGATATTGCCCTCTAA

Protein sequence

MHGRERKDGVLSLIDRLKFDLIMQGNDLKRGLLCLLKLNSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQGIMKFSEDFLDLIDAADITGQADIAL

Homology

[Close]

BLAST of Sed0004563 vs. NCBI nr
Match: KAA0026077.1 (uncharacterized protein E6C27_scaffold19G00070 [Cucumis melo var. makuwa] >TYJ96340.1 uncharacterized protein E5676_scaffold1970G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 IVKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. NCBI nr
Match: XP_038887684.1 (uncharacterized protein LOC120077754 isoform X2 [Benincasa hispida] >XP_038887685.1 uncharacterized protein LOC120077754 isoform X2 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
           RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 793 RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 852

Query: 76  IMKFSEDFLDLIDAADITGQADIA 99
           I+KF+++FLDLIDAAD TGQADIA
Sbjct: 853 IVKFAKEFLDLIDAADATGQADIA 873

[Close]

BLAST of Sed0004563 vs. NCBI nr
Match: XP_008458090.1 (PREDICTED: uncharacterized protein LOC103497626 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 IVKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. NCBI nr
Match: XP_031744424.1 (uncharacterized protein LOC101213309 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16  RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
           RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 801 RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 860

Query: 76  IMKFSEDFLDLIDAADITGQADIA 99
           I+KF+++FLDLIDAAD TGQADIA
Sbjct: 861 IVKFAKEFLDLIDAADATGQADIA 881

[Close]

BLAST of Sed0004563 vs. NCBI nr
Match: XP_004149319.1 (uncharacterized protein LOC101213309 isoform X1 [Cucumis sativus] >KGN44669.1 hypothetical protein Csa_015655 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.3e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 IVKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. ExPASy TrEMBL
Match: A0A5A7SMW9 (WD_REPEATS_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00480 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 IVKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. ExPASy TrEMBL
Match: A0A0A0K6W8 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G368210 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 IVKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. ExPASy TrEMBL
Match: A0A1S3C759 (uncharacterized protein LOC103497626 OS=Cucumis melo OX=3656 GN=LOC103497626 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+NA +DLNDILS   LTTK++D++ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNAGLDLNDILS---LTTKKEDMVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 IVKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. ExPASy TrEMBL
Match: A0A6J1KYT4 (uncharacterized protein LOC111497612 OS=Cucurbita maxima OX=3661 GN=LOC111497612 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+N  +DLNDILS   LTTK++DI+ETFQG
Sbjct: 952  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNTGLDLNDILS---LTTKKEDIVETFQG 1011

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I KF+++FLDLIDAAD TGQADIA
Sbjct: 1012 ITKFAKEFLDLIDAADATGQADIA 1032

[Close]

BLAST of Sed0004563 vs. ExPASy TrEMBL
Match: A0A6J1H7H6 (uncharacterized protein LOC111460785 OS=Cucurbita moschata OX=3662 GN=LOC111460785 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-22
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQGNDLKR L CLL + NSR MGQ+N  +DLNDILS   LTTK++DI+ETFQG
Sbjct: 953  RLEFDLAMQGNDLKRALQCLLTMSNSRDMGQDNTGLDLNDILS---LTTKKEDIVETFQG 1012

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I KF+++FLDLIDAAD TGQADIA
Sbjct: 1013 ITKFAKEFLDLIDAADATGQADIA 1033

[Close]

BLAST of Sed0004563 vs. TAIR 10
Match: AT5G24710.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-20
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 16   RLKFDLIMQGNDLKRGLLCLLKL-NSRTMGQNNADIDLNDILSLSCLTTKRKDIMETFQG 75
            RL+FDL MQ NDLKR L CLL + NS+ +GQ+   +DL+DILSL+   TK++D++E  +G
Sbjct: 950  RLEFDLAMQSNDLKRALHCLLTMSNSKDIGQDGVGLDLSDILSLT--ATKKEDVVEAVEG 1009

Query: 76   IMKFSEDFLDLIDAADITGQADIA 99
            I+KF+++FLDLIDAAD TG ADIA
Sbjct: 1010 IVKFAKEFLDLIDAADATGHADIA 1031

The following BLAST results are available for this feature:

BLAST of Sed0004563 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026077.1	3.3e-22	72.62	uncharacterized protein E6C27_scaffold19G00070 [Cucumis melo var. makuwa] >TYJ96...	[more]
XP_038887684.1	3.3e-22	72.62	uncharacterized protein LOC120077754 isoform X2 [Benincasa hispida] >XP_03888768...	[more]
XP_008458090.1	3.3e-22	72.62	PREDICTED: uncharacterized protein LOC103497626 [Cucumis melo]	[more]
XP_031744424.1	3.3e-22	72.62	uncharacterized protein LOC101213309 isoform X2 [Cucumis sativus]	[more]
XP_004149319.1	3.3e-22	72.62	uncharacterized protein LOC101213309 isoform X1 [Cucumis sativus] >KGN44669.1 hy...	[more]

BLAST of Sed0004563 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004563 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMW9	1.6e-22	72.62	WD_REPEATS_REGION domain-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K6W8	1.6e-22	72.62	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G...	[more]
A0A1S3C759	1.6e-22	72.62	uncharacterized protein LOC103497626 OS=Cucumis melo OX=3656 GN=LOC103497626 PE=...	[more]
A0A6J1KYT4	3.6e-22	72.62	uncharacterized protein LOC111497612 OS=Cucurbita maxima OX=3661 GN=LOC111497612...	[more]
A0A6J1H7H6	3.6e-22	72.62	uncharacterized protein LOC111460785 OS=Cucurbita moschata OX=3662 GN=LOC1114607...	[more]

BLAST of Sed0004563 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24710.1	1.9e-20	59.52	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45521:SF3	BNAC07G49640D PROTEIN	coord: 14..98
None	No IPR available	PANTHER	PTHR45521	TSET COMPLEX MEMBER TSTF	coord: 14..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004563.1	Sed0004563.1	mRNA