Sed0004543 (gene) Chayote v1

Overview
NameSed0004543
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 15912380 .. 15912763 (+)
RNA-Seq ExpressionSed0004543
SyntenySed0004543
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGCTACTCTTTCAAATCTCTCTCGTTTTCTGGCTACTTAACTTCAAAAGATAGGCAGCCAGTTACGACAGTATCCGAGGAGAAGATCAAAACGCGAGACCGAGGATCCGAGGTTTCGGTTATACCGAAGCCGAAGCGGAAACAGTCCCAAGTTTGTTGTAGGGGGGGAGTTGGTAATATTGATGGAGAGAGATGGTTGGTTGTGAGAAACCACAGTATCAGAAGAGATGGTCGAAGGATAAGGGATGGGGAAGAAGAAGAACCGTCCCGGTCTGGGTGGAGTGTTCTCCGGTCCTTTGTTTCGCCGTGTAGGCAGTGCCGAGCTAGCAAGCCTGCTGTTATTGAACCGCGTTCGGTTCAAATGCCTTCATATTCTTGA

mRNA sequence

ATGAGCAGCTACTCTTTCAAATCTCTCTCGTTTTCTGGCTACTTAACTTCAAAAGATAGGCAGCCAGTTACGACAGTATCCGAGGAGAAGATCAAAACGCGAGACCGAGGATCCGAGGTTTCGGTTATACCGAAGCCGAAGCGGAAACAGTCCCAAGTTTGTTGTAGGGGGGGAGTTGGTAATATTGATGGAGAGAGATGGTTGGTTGTGAGAAACCACAGTATCAGAAGAGATGGTCGAAGGATAAGGGATGGGGAAGAAGAAGAACCGTCCCGGTCTGGGTGGAGTGTTCTCCGGTCCTTTGTTTCGCCGTGTAGGCAGTGCCGAGCTAGCAAGCCTGCTGTTATTGAACCGCGTTCGGTTCAAATGCCTTCATATTCTTGA

Coding sequence (CDS)

ATGAGCAGCTACTCTTTCAAATCTCTCTCGTTTTCTGGCTACTTAACTTCAAAAGATAGGCAGCCAGTTACGACAGTATCCGAGGAGAAGATCAAAACGCGAGACCGAGGATCCGAGGTTTCGGTTATACCGAAGCCGAAGCGGAAACAGTCCCAAGTTTGTTGTAGGGGGGGAGTTGGTAATATTGATGGAGAGAGATGGTTGGTTGTGAGAAACCACAGTATCAGAAGAGATGGTCGAAGGATAAGGGATGGGGAAGAAGAAGAACCGTCCCGGTCTGGGTGGAGTGTTCTCCGGTCCTTTGTTTCGCCGTGTAGGCAGTGCCGAGCTAGCAAGCCTGCTGTTATTGAACCGCGTTCGGTTCAAATGCCTTCATATTCTTGA

Protein sequence

MSSYSFKSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCRASKPAVIEPRSVQMPSYS
Homology
BLAST of Sed0004543 vs. NCBI nr
Match: KAG6573282.1 (hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-22
Identity = 70/133 (52.63%), Postives = 90/133 (67.67%), Query Frame = 0

Query: 2   SSYSFKSLSFSGYLTSKDRQPVTTVSEEKIKTRDR------------GSEVSVIPKPKRK 61
           SS S  SLSFSG++TSKDRQP     ++ I+T D+            G +  V+P+P+ +
Sbjct: 15  SSSSNYSLSFSGFVTSKDRQP-----DKIIRTPDQRFEFGSSVANHYGGQSLVLPRPRPE 74

Query: 62  QSQVCCRGGVGNIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCR 121
           Q+QV C+  +   +    L+VRNHSIRR GRRIR+ EEEE + SGWSV RSFVSPCR+CR
Sbjct: 75  QAQVSCKRQLERDE----LMVRNHSIRRGGRRIRE-EEEESTWSGWSVFRSFVSPCRECR 134

Query: 122 ASKPAVIEPRSVQ 123
           ASKPAV+E R VQ
Sbjct: 135 ASKPAVVEARPVQ 137

BLAST of Sed0004543 vs. NCBI nr
Match: XP_022139818.1 (uncharacterized protein LOC111010640 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 4.4e-19
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 0

Query: 2   SSYSF-KSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVG 61
           SSYSF  SLSF+ YLT KDR+P    S   IKT D+G E   I            R  + 
Sbjct: 26  SSYSFSSSLSFAAYLTCKDREP---NSGGLIKTGDQGFEFGPICCDDHDGGSGSGRRRIR 85

Query: 62  NIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGW-SVLRSFVSPCRQCRASKP-AVIEP 121
           + DG+RWLVVRN+SIRR GRRI+D EEE  S + W SV RSFVSPCR+CRASKP AVIE 
Sbjct: 86  DDDGQRWLVVRNNSIRRGGRRIKDEEEESSSSTSWSSVFRSFVSPCRECRASKPSAVIEA 144

BLAST of Sed0004543 vs. NCBI nr
Match: KAA0057006.1 (hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK26433.1 hypothetical protein E5676_scaffold861G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.7e-13
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 0

Query: 8   SLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERW 67
           SLSFSGYL SKDR+  +  S   I+T+DR  ++ V+          C    V +  GER 
Sbjct: 21  SLSFSGYLNSKDREEPSLGS---IETQDR--KIKVVNHGFEFGGPTCRGSSVSDYIGERS 80

Query: 68  --LVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCRASKPAVIEPRSVQMPS 126
              +VRN+SIRR  ++IR+ +EE    S W V+ SFV PCR+CRASKP V++PR +Q PS
Sbjct: 81  SPYIVRNNSIRRGSKKIREEKEE----SRWRVVWSFVLPCRECRASKPNVVQPRPIQGPS 131

BLAST of Sed0004543 vs. NCBI nr
Match: KGN64696.1 (hypothetical protein Csa_013090 [Cucumis sativus])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 53/124 (42.74%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 8   SLSFSGYLTSKDRQPVTTVS----EEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNID 67
           SLSFSGYL SKDR   +  S    + KIK  D G E S             C G   +  
Sbjct: 20  SLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFS-----------PTCGGSSVSDY 79

Query: 68  GER--WLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCRASKPAVIEPRSV 126
           GER    +VRN+SI+R  ++I + E++E   SGW +   FV PCR+CRA KP+V++PR +
Sbjct: 80  GERSSAYIVRNNSIKRGSKKIWE-EKDESRWSGWRIFWLFVLPCRECRARKPSVVQPRPI 131

BLAST of Sed0004543 vs. ExPASy TrEMBL
Match: A0A6J1CGL7 (uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010640 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 0

Query: 2   SSYSF-KSLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVG 61
           SSYSF  SLSF+ YLT KDR+P    S   IKT D+G E   I            R  + 
Sbjct: 26  SSYSFSSSLSFAAYLTCKDREP---NSGGLIKTGDQGFEFGPICCDDHDGGSGSGRRRIR 85

Query: 62  NIDGERWLVVRNHSIRRDGRRIRDGEEEEPSRSGW-SVLRSFVSPCRQCRASKP-AVIEP 121
           + DG+RWLVVRN+SIRR GRRI+D EEE  S + W SV RSFVSPCR+CRASKP AVIE 
Sbjct: 86  DDDGQRWLVVRNNSIRRGGRRIKDEEEESSSSTSWSSVFRSFVSPCRECRASKPSAVIEA 144

BLAST of Sed0004543 vs. ExPASy TrEMBL
Match: A0A5D3DS79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00970 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.3e-13
Identity = 55/120 (45.83%), Postives = 74/120 (61.67%), Query Frame = 0

Query: 8   SLSFSGYLTSKDRQPVTTVSEEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNIDGERW 67
           SLSFSGYL SKDR+  +  S   I+T+DR  ++ V+          C    V +  GER 
Sbjct: 21  SLSFSGYLNSKDREEPSLGS---IETQDR--KIKVVNHGFEFGGPTCRGSSVSDYIGERS 80

Query: 68  --LVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCRASKPAVIEPRSVQMPS 126
              +VRN+SIRR  ++IR+ +EE    S W V+ SFV PCR+CRASKP V++PR +Q PS
Sbjct: 81  SPYIVRNNSIRRGSKKIREEKEE----SRWRVVWSFVLPCRECRASKPNVVQPRPIQGPS 131

BLAST of Sed0004543 vs. ExPASy TrEMBL
Match: A0A0A0LXF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 53/124 (42.74%), Postives = 71/124 (57.26%), Query Frame = 0

Query: 8   SLSFSGYLTSKDRQPVTTVS----EEKIKTRDRGSEVSVIPKPKRKQSQVCCRGGVGNID 67
           SLSFSGYL SKDR   +  S    + KIK  D G E S             C G   +  
Sbjct: 20  SLSFSGYLNSKDRDDPSLGSIETHDRKIKVVDHGFEFS-----------PTCGGSSVSDY 79

Query: 68  GER--WLVVRNHSIRRDGRRIRDGEEEEPSRSGWSVLRSFVSPCRQCRASKPAVIEPRSV 126
           GER    +VRN+SI+R  ++I + E++E   SGW +   FV PCR+CRA KP+V++PR +
Sbjct: 80  GERSSAYIVRNNSIKRGSKKIWE-EKDESRWSGWRIFWLFVLPCRECRARKPSVVQPRPI 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6573282.17.3e-2252.63hypothetical protein SDJN03_27169, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022139818.14.4e-1955.74uncharacterized protein LOC111010640 [Momordica charantia][more]
KAA0057006.14.7e-1345.83hypothetical protein E6C27_scaffold96G001880 [Cucumis melo var. makuwa] >TYK2643... [more]
KGN64696.11.5e-1142.74hypothetical protein Csa_013090 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CGL72.1e-1955.74uncharacterized protein LOC111010640 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A5D3DS792.3e-1345.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LXF97.3e-1242.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G075010 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004543.1Sed0004543.1mRNA