Sed0004508 (gene) Chayote v1

Overview


Name	Sed0004508
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG03: 16329697 .. 16330148 (+)
RNA-Seq Expression	Sed0004508
Synteny	Sed0004508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAGAAAGAAAAAAAACCCTTTTTTGTTGAAAATTAGGGTTTTTTTAGGGTTTAAATTCCATGGCTGGGCTTCAATACAACTTCTTCCCCACTGATCTTCTTTACCCTAAATCTTCTTCTTCAAATGAAGCCATGAATAGGGCAAGTGTTGCCTTTAAAATTGATCATGGTGATGATCCCAAAACAAACATAATCCTTCAAAAGGATGATAAATCACCATTGATTCCCAAGCATCAAATCAACAAGAATCTTCAACTCTCCAATGATTCAATTCTCTTTCAATGAATTCAAATTTCATATTATGGGCTTTCTATTTTTTCCTTTTTTTTCTTTTGCATCTTTTTTTTCTTTTTTTGTTTTGCATTAATTGTGAGTTTAAATAAGTTTCATTTTCTATAATAGTAGTGAGGTTATTTCATTTGCTATATTGAAGGGTGCTTGAGTGAGT

mRNA sequence

AGAAAAAGAAAGAAAAAAAACCCTTTTTTGTTGAAAATTAGGGTTTTTTTAGGGTTTAAATTCCATGGCTGGGCTTCAATACAACTTCTTCCCCACTGATCTTCTTTACCCTAAATCTTCTTCTTCAAATGAAGCCATGAATAGGGCAAGTGTTGCCTTTAAAATTGATCATGGTGATGATCCCAAAACAAACATAATCCTTCAAAAGGATGATAAATCACCATTGATTCCCAAGCATCAAATCAACAAGAATCTTCAACTCTCCAATGATTCAATTCTCTTTCAATGAATTCAAATTTCATATTATGGGCTTTCTATTTTTTCCTTTTTTTTCTTTTGCATCTTTTTTTTCTTTTTTTGTTTTGCATTAATTGTGAGTTTAAATAAGTTTCATTTTCTATAATAGTAGTGAGGTTATTTCATTTGCTATATTGAAGGGTGCTTGAGTGAGT

Coding sequence (CDS)

ATGGCTGGGCTTCAATACAACTTCTTCCCCACTGATCTTCTTTACCCTAAATCTTCTTCTTCAAATGAAGCCATGAATAGGGCAAGTGTTGCCTTTAAAATTGATCATGGTGATGATCCCAAAACAAACATAATCCTTCAAAAGGATGATAAATCACCATTGATTCCCAAGCATCAAATCAACAAGAATCTTCAACTCTCCAATGATTCAATTCTCTTTCAATGA

Protein sequence

MAGLQYNFFPTDLLYPKSSSSNEAMNRASVAFKIDHGDDPKTNIILQKDDKSPLIPKHQINKNLQLSNDSILFQ

Homology

[Close]

BLAST of Sed0004508 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-13
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPK---SSSSNEAMNRASVAFK------------IDHGDDPKTNII 60
          MAGLQYNFFPTDLLYPK   SSSS+EA+NRASV FK            IDHGD+PK+ ++
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

[Close]

BLAST of Sed0004508 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPK---SSSSNEAMNRASVAFK-----------IDHGDDPKTNIIL 60
          MAGLQYNFFPTDLLYPK   SSSS+EA+NRASV FK           IDHGD+ K+ +  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

[Close]

BLAST of Sed0004508 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 6.3e-10
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPK----------SSSSNEAMNRASVAFK----------IDHGDDP 60
          MAGLQYNFFPTDLLYPK          SSSS++A+NRASV FK           DHGD  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60

Query: 61 KTNIILQKDDKSPLIPKHQINKN 64
          K ++ +QK D+SPLI KHQ+  +
Sbjct: 61 K-SLSIQKGDRSPLILKHQVKND 82

[Close]

BLAST of Sed0004508 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.3e-13
Identity = 48/76 (63.16%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPK---SSSSNEAMNRASVAFK------------IDHGDDPKTNII 60
          MAGLQYNFFPTDLLYPK   SSSS+EA+NRASV FK            IDHGD+PK+ ++
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

[Close]

BLAST of Sed0004508 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.5e-12
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPK---SSSSNEAMNRASVAFK-----------IDHGDDPKTNIIL 60
          MAGLQYNFFPTDLLYPK   SSSS+EA+NRASV FK           IDHGD+ K+ +  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

[Close]

BLAST of Sed0004508 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.5e-12
Identity = 46/74 (62.16%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 1  MAGLQYNFFPTDLLYPK---SSSSNEAMNRASVAFK-----------IDHGDDPKTNIIL 60
          MAGLQYNFFPTDLLYPK   SSSS+EA+NRASV FK           IDHGD+ K+ +  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

The following BLAST results are available for this feature:

BLAST of Sed0004508 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53975.1	2.7e-13	63.16	hypothetical protein Csa_018873 [Cucumis sativus]	[more]
ADN34001.1	2.0e-11	62.16	hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote...	[more]
KAG6603410.1	6.3e-10	53.01	hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0004508 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWJ2	1.3e-13	63.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1	[more]
A0A5A7V9D3	9.5e-12	62.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GC02	9.5e-12	62.16	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Sed0004508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004508.1	Sed0004508.1	mRNA