Sed0004504 (gene) Chayote v1

Overview


Name	Sed0004504
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Arabinogalactan protein 22, putative
Location	LG11: 634275 .. 636209 (+)
RNA-Seq Expression	Sed0004504
Synteny	Sed0004504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCATTCTTCGAATCCAAATTCATTTTCATTTTGAGCATTCTCACTTTTTTTTTATTCCTTTAAATTTCCAAAAATTATTCGATTCCAGTCGAAAATTATGAGTCCGATGAAGCTAACCGCCGTTCCGATCGTCGGATTCATGTTCTTGATTCTTCTGCAATTGGCCTACGGCCACTCGCACGATATTTCTCCGGCGCCGGCGGGTCCTTCGAACCACGGTGAGTTTTTCAGGCGATCTCTGTTTTTTATTTGGCATATTTTCAATTTGGTCTTTTCTGTTTCTAGAATTGCAATTTAGCCTCATGAGTTTGTGTTTAGCTCTTATGATTTGATTTTTTTAGTTTTGGTTTATGATTTTAGGGAATCAAAATTGGCTGAAAACTTTACAAGATATTGTCTGTTGTAAGGTGTTGTGAAATTTATGATTAAATGAATAAAAAATATATATGTGGCTTTGAGAGAGTTCAAACAATAATTCAATGATATCATTGGTAATCATATTGGATGGAAAGTATTGATAGGGTCTTTGTTTTACGTTTACAAGTTTAATATTGAAAATCTATATTTTTTATTATCATTTTGAGTTTGTGTCCAATTTGTCCTCAAAATTAAGAAAAAAAAATGATAAACTACATTGAAATTACAGGACCAAAATTAATATGTAGGGTAAATTACAAAATTTATCCATATGATTGAAAAAAAATTAACCAATATAATTTTAAAATTTAAAATTTTGTAACAAAAAATAGTGATAGTCTAATAACATCAATTATCAAATATTAACCCTTAGGGGCTGTTTGTTTGACATATTTAGGTAGTTTTTAGGTCAATGAGTTATATTGAGAAGTTATGTTGAGTTAAAAATTGAAAATTGTGTCAAAAACTCGTTTGGATGTAGTTTTTGTATAGAGGAGTTAAAAGTCAAAATCTTGTTTGGATGAAGATTTGAAAATGAGTAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGAATGGTTAAAAATGAGTTATTTTGATTGATTTGAAAGGAATAATTAAAAATAGGCTGGTCAGAAATGATTGAGCAGTTATAAATGAATGATTAAAAATGAATTGTTAGAAATGAGAGTTATTTTTAAAAGTAAAAATGAAGAAGAATTAATAAAAACTCGTTTGGATGTAGATTTTTTAGGAGGAATTAATAACTTCTCCTACTAACTCCTACCTAAATATGTCAAACAAACAGCCCCTTAGGTGGTTAAAAAACTTGAATTTAGATTTTTCAAAAAAAAAAAAAAATTGAATTTGATCCAAGTTGACTAGTAAAAATAGTTAGATACATGTTTGTAATGACGTACGAGTTAAATAATTGATTGGAAAAGAAAAGGTACATCTCACATGATTAGAAATAATATACACTATTGGGACAAAACTCTTCCTTTTTAATCCTACAACTAAATTCAAACTTTGTTTCAATTATACTGACCAAATTTATATATAAAAAAAAAAATTATAAAAAAATCCAAATTTATAATTAACTTAGATTGATTGAAAAAACATGAATACTAATTTTTGTGGTATTGTTTATTGTTGCAGGCGCTACAATTGACCAAGGGATTGCTTACGTTCTTCTTTTGGTTGCTCTCGCCGTTACCTTCCTCTTCCATTGATTTTTTTTTTTTACAGAGCTGTGTTATAGATTTAAATAAATAATTTCATTTGGATATGTAATTTTCTATTGGATAGTTTTTCTCATGTATTTGGGAGGTATTGAAATATAATTTGTTATGTTAATTTGGTGATAATCGATGTTTATGTATTTGTAGTTTTTCTTTATTTGTTGGTGAAGAGATTGAAATATAATTTGTTTGGCTAGACGACTTTGAAATATTGACATTTAGTGCACAATAAAATCTTTGTTTTAAGTTGCCTCAACCATTGACTTGTG

mRNA sequence

TTTCCATTCTTCGAATCCAAATTCATTTTCATTTTGAGCATTCTCACTTTTTTTTTATTCCTTTAAATTTCCAAAAATTATTCGATTCCAGTCGAAAATTATGAGTCCGATGAAGCTAACCGCCGTTCCGATCGTCGGATTCATGTTCTTGATTCTTCTGCAATTGGCCTACGGCCACTCGCACGATATTTCTCCGGCGCCGGCGGGTCCTTCGAACCACGGCGCTACAATTGACCAAGGGATTGCTTACGTTCTTCTTTTGGTTGCTCTCGCCGTTACCTTCCTCTTCCATTGATTTTTTTTTTTTACAGAGCTGTGTTATAGATTTAAATAAATAATTTCATTTGGATATGTAATTTTCTATTGGATAGTTTTTCTCATGTATTTGGGAGGTATTGAAATATAATTTGTTATGTTAATTTGGTGATAATCGATGTTTATGTATTTGTAGTTTTTCTTTATTTGTTGGTGAAGAGATTGAAATATAATTTGTTTGGCTAGACGACTTTGAAATATTGACATTTAGTGCACAATAAAATCTTTGTTTTAAGTTGCCTCAACCATTGACTTGTG

Coding sequence (CDS)

ATGAGTCCGATGAAGCTAACCGCCGTTCCGATCGTCGGATTCATGTTCTTGATTCTTCTGCAATTGGCCTACGGCCACTCGCACGATATTTCTCCGGCGCCGGCGGGTCCTTCGAACCACGGCGCTACAATTGACCAAGGGATTGCTTACGTTCTTCTTTTGGTTGCTCTCGCCGTTACCTTCCTCTTCCATTGA

Protein sequence

MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH

Homology

[Close]

BLAST of Sed0004504 vs. NCBI nr
Match: KGN60622.1 (hypothetical protein Csa_019490 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-18
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPA AGPSN GA IDQGIAYVLLL+ALAVT
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPA-AGPSNDGAAIDQGIAYVLLLLALAVT 60

Query: 61 FLFH 65
          ++ H
Sbjct: 61 YIVH 63

[Close]

BLAST of Sed0004504 vs. NCBI nr
Match: KAA0061559.1 (putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 3.5e-17
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA  GPSN GA IDQGIAYVLLL+ALA+T
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAIT 60

Query: 61 FLFH 65
          ++ H
Sbjct: 61 YIIH 63

[Close]

BLAST of Sed0004504 vs. NCBI nr
Match: KDP33656.1 (hypothetical protein JCGZ_07227 [Jatropha curcas])

HSP 1 Score: 87.8 bits (216), Expect = 3.7e-14
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MSPM L A+PI+GFMFL LLQL +G +   SPA  GPS+ G TIDQGIAYVL+LVALAVT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 FLFH 65
          +LFH
Sbjct: 61 YLFH 64

[Close]

BLAST of Sed0004504 vs. NCBI nr
Match: KAF9662510.1 (hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii])

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          M+ M+L A+PI+GFMFL LL+  +G     SPAP GPSN G TIDQGIAYVLL++ALA+T
Sbjct: 1  MNSMRLYALPIIGFMFLALLEFGFGQGMASSPAPEGPSNDGKTIDQGIAYVLLMLALAIT 60

Query: 61 FLFH 65
          +L H
Sbjct: 61 YLLH 64

[Close]

BLAST of Sed0004504 vs. NCBI nr
Match: OAY53733.1 (hypothetical protein MANES_03G019400v8 [Manihot esculenta])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MSPMKL  +PI+G +FL L+QL+YG     SPAP GPS+ G  IDQGIA++L+LVALAVT
Sbjct: 1  MSPMKLFGLPIIGLVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAVT 60

Query: 61 FLFH 65
          +L H
Sbjct: 61 YLIH 64

[Close]

BLAST of Sed0004504 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 11 IVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH 65
          IV  +F ILL +A  H+   +PAPA P++ G TIDQGIAYVL+LVAL +T+L H
Sbjct: 13 IVSIIFAILLPMA--HAQSAAPAPA-PTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Sed0004504 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-07
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          M+ +K     +  F+ + ++ L    SH  SPAPA P++ G +IDQGIAYVL++VALA+T
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPA-PTSDGTSIDQGIAYVLMMVALALT 60

Query: 61 FLFH 65
          +  H
Sbjct: 61 YFIH 63

[Close]

BLAST of Sed0004504 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.0e-06
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 6  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH 65
          +T   +  F+F ++L LA   S  ++PAPA P++ G +IDQGIAY+L++VAL +T+L H
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPA-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Sed0004504 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 2.7e-04
Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 6  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH 65
          +  + +  F+F ++   A   S  ++PAP+ P++ G +IDQGIAY+L++VAL +T+L H
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPS-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Sed0004504 vs. ExPASy TrEMBL
Match: A0A0A0LIU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPA AGPSN GA IDQGIAYVLLL+ALAVT
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPA-AGPSNDGAAIDQGIAYVLLLLALAVT 60

Query: 61 FLFH 65
          ++ H
Sbjct: 61 YIVH 63

[Close]

BLAST of Sed0004504 vs. ExPASy TrEMBL
Match: A0A5A7V7C0 (Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00220 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-17
Identity = 49/64 (76.56%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA  GPSN GA IDQGIAYVLLL+ALA+T
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPA-EGPSNDGAAIDQGIAYVLLLLALAIT 60

Query: 61 FLFH 65
          ++ H
Sbjct: 61 YIIH 63

[Close]

BLAST of Sed0004504 vs. ExPASy TrEMBL
Match: A0A067KBQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MSPM L A+PI+GFMFL LLQL +G +   SPA  GPS+ G TIDQGIAYVL+LVALAVT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 FLFH 65
          +LFH
Sbjct: 61 YLFH 64

[Close]

BLAST of Sed0004504 vs. ExPASy TrEMBL
Match: A0A2C9W3S5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.5e-13
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MSPMKL  +PI+G +FL L+QL+YG     SPAP GPS+ G  IDQGIA++L+LVALAVT
Sbjct: 1  MSPMKLFGLPIIGLVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAVT 60

Query: 61 FLFH 65
          +L H
Sbjct: 61 YLIH 64

[Close]

BLAST of Sed0004504 vs. ExPASy TrEMBL
Match: A0A2C9UBX1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G116900 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.7e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          MSPMKL A    GFM   LLQL YG     SPAP GP++ G +IDQGIAY+LLLVALA+T
Sbjct: 1  MSPMKLYAAEFAGFMLFALLQLGYGQGLAPSPAPQGPTSDGKSIDQGIAYILLLVALAIT 60

Query: 61 FLFH 65
          +LFH
Sbjct: 61 YLFH 64

[Close]

BLAST of Sed0004504 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 11 IVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH 65
          IV  +F ILL +A  H+   +PAPA P++ G TIDQGIAYVL+LVAL +T+L H
Sbjct: 13 IVSIIFAILLPMA--HAQSAAPAPA-PTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of Sed0004504 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-08
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 1  MSPMKLTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVT 60
          M+ +K     +  F+ + ++ L    SH  SPAPA P++ G +IDQGIAYVL++VALA+T
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPA-PTSDGTSIDQGIAYVLMMVALALT 60

Query: 61 FLFH 65
          +  H
Sbjct: 61 YFIH 63

[Close]

BLAST of Sed0004504 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 51.2 bits (121), Expect = 3.5e-07
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 6  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH 65
          +T   +  F+F ++L LA   S  ++PAPA P++ G +IDQGIAY+L++VAL +T+L H
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPA-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]

BLAST of Sed0004504 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 45.4 bits (106), Expect = 1.9e-05
Identity = 23/59 (38.98%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 6  LTAVPIVGFMFLILLQLAYGHSHDISPAPAGPSNHGATIDQGIAYVLLLVALAVTFLFH 65
          +  + +  F+F ++   A   S  ++PAP+ P++ G +IDQGIAY+L++VAL +T+L H
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPS-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

The following BLAST results are available for this feature:

BLAST of Sed0004504 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60622.1	4.2e-18	81.25	hypothetical protein Csa_019490 [Cucumis sativus]	[more]
KAA0061559.1	3.5e-17	76.56	putative Arabinogalactan protein 22 [Cucumis melo var. makuwa] >TYK10713.1 putat...	[more]
KDP33656.1	3.7e-14	70.31	hypothetical protein JCGZ_07227 [Jatropha curcas]	[more]
KAF9662510.1	5.3e-13	62.50	hypothetical protein SADUNF_Sadunf18G0060600 [Salix dunnii]	[more]
OAY53733.1	1.5e-12	62.50	hypothetical protein MANES_03G019400v8 [Manihot esculenta]	[more]

BLAST of Sed0004504 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	1.5e-07	57.41	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	7.7e-07	43.75	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
O82337	5.0e-06	45.76	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	2.7e-04	38.98	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of Sed0004504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIU0	2.0e-18	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1	[more]
A0A5A7V7C0	1.7e-17	76.56	Putative Arabinogalactan protein 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A067KBQ4	1.8e-14	70.31	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_07227 PE=4 SV=1	[more]
A0A2C9W3S5	7.5e-13	62.50	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=...	[more]
A0A2C9UBX1	9.7e-13	64.06	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_16G116900 PE=4 SV=...	[more]

BLAST of Sed0004504 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	1.1e-08	57.41	arabinogalactan protein 41	[more]
AT5G53250.1	5.5e-08	43.75	arabinogalactan protein 22	[more]
AT2G46330.1	3.5e-07	45.76	arabinogalactan protein 16	[more]
AT3G61640.1	1.9e-05	38.98	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 31..64 e-value: 9.7E-15 score: 54.2
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 2..64
None	No IPR available	PANTHER	PTHR33374:SF7	ARABINOGALACTAN PEPTIDE 22	coord: 2..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004504.1	Sed0004504.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane