Sed0004487 (gene) Chayote v1

Overview
NameSed0004487
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG03: 17128801 .. 17131591 (-)
RNA-Seq ExpressionSed0004487
SyntenySed0004487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTGTTAGGTTTGCTTATTGCCTTTTGCTGGTTGCTCTTCCTGTTACATCACTTTCCATCTTGAAGTTTCATCAAGGTTTTTATCACTGCTCATTCTTAATAATTGATTACCTTTCTCTCTAATATAATTACTTATTTTCAACTATACTCAAATGAAGGTAGGAGATTTGAATTGAATATGTTTATCCATTTGTTTAAAGAATGTTGGAATAAACTTAAATATATTTTAATGTATTTTTGGAATATTTAATTTAAGAATTAATAGGTAAATAATTAAAGAATTAATGGATTTTCAATTTAGGATTGTATTAAGGAATTAGTAAATTTTATTGTTTTAGCAATTTTGGTAAGAACTTAGAGACCAAATTTGTAATAAGCTATAAATAGAGTGTTCTTTCTCTGTGAATTGTAAAAACAATCCTAGAGCACAGGAGAGTGAAGAGAGGAAAAGTTGTGTAAAGAGTAATTATAGAAATAAAGGAAAGTGTTTTAGAGAAATTGTTGGGTGCAATATCTCTCCAATCCCGAAGAGAAAAGATTGCGTTATTGTTATTTGCGTTTAATGTTTTTCTTCGAATCGCGATCTTACAAAGAACACCAATTGTGTATAAACTTTCAACCATTTAAAAAGATATCCATTACATTATGCAAGCTTGCCTGCCTGTTTTGATGGAGAATTGAGCTCTTGACTGTTAATCGATTTCTTAATATATTACTAACAATTTTTTCATTGTAGGGTTTGAATATTATATACTTGTGTTTAACTAGTTCAACTAAATTGTCTAAGAAAACAAATTGAAATTTATTGATACTTTTGTCGTTTTGTTTTATTTCACTTCTCTAAAACGAAATCCTGACTATTTTGAAAAATGCTACTTCTTCTAATGAATAAGATTTTTTTTCTGTTTTCTTTTTTGGTTTAGAGGACAAAGATCCAGCTCAAGATAGTTTTGTTTCACTTGAAAAGGTAATTGAAATTTTCACAAAATTTTCATAATTAGGATTAGATTAATATGTATATCAATAATCTTAATCTTTTTTCCCCTTTTTTTCTTTAGGAACTAGTTTTAAACAACATTCAAGGAAGAAGATTAGGAGTGAAAGAACTTGTGCTATTGGAAAGTAGGAAAAGCTTGGGAGGTGGGATTAAAGAGAAGATTTCAAGGAAGGCCTTTTTAAGTTCTAATTCCATTGGAGAAAGTGGAGAAAAGAAGAACAAAATTTCATGGTTTGAAAGAAAGAAATTGGGTAGTGGGTCTGAATTAGTTTATAATAATGCTGATTATATGACTCACATGCATCACCCACCAAAACATAATTGATGCATGGGAAATTTTAAGACCCTTGGTTAATTCAGTTTTATGTTATATCTATATATATATATATATGTCAAGTTATGAGTTTTCCCTATCTGTAAGCCAATATAAATTAATTAAAGAGCCTTTTATCTCATATTTATGAGTTTATTTTACCCATTTGTTATTAAAATGATCTCTTTGTAGGTAATGGAGATCGGGTTGTATCTTGTGTATTATTATAACTTATATTGTTCGGATGAATAGACTTTAATCGATAATTTCAATCAATGTTAAAAGTTAAAATTTATTTATGTCACTAATTAACTGAATTGCTCAAAATGTAAAAAAATTATGGAGTTCCACAAGTTTCACTTGAACCTATTATGATTTAAAGAATAGAACATTCATGAAGCATTCATTCTTCACCTTCGACAATGAATAGGCTCGGTTCAAAATCTATTTCACGTGTAGAAACTATTTTAAGAGAGGATGGACCATTTGATGCTTTGGAAGTCAATGTGTGCAAGATTGAATTTTACCATGGAACTAATGATATGAGATATGAATTAAAATGTCTTAATCATTCCACTAGGACTTCAATTACTCAAAGGAGAGTTACAAATTTTTATTCAATTTTTAGTTTTAAAATCTTGTTTTTAATGTTTTAAGTTACATTTTGCAAAGTTATCATCATGATATTGATGAAGATGAAAGTTGTAACCTCCAAATGACCATATGTTACTTTCTTTTTAGAGCCTAATTTTCTTAGGTTATAAAAAGCCATGAACTTGTAAAACTTAGATTTTGATGAATGCAAAATTGTTCTCTACAATAGATCTTTTCTAAGAAATTTAGAGCATAATATTTTTCTTTTTTAAGTTCCCTTGCAATTCTTGTGATAGATTGTATCTGAGCCATTCAATCCAGCTTTGATCAAGTTAGATTGTGGAGTGACTCAATCTAAAACAAGATCTTCCATATCTTACTCTAGATCTTTGATCTTAAGAGGTAATCAAATTCTAACTTTTTTATTAGTTGTTCCAATACATAAGGAGGTGTTAATCTCTTAATTCTAGGGTTCTTGCTTCATTATAAGATTGGATCTTTGGGCTAAGAATTAGGGTTGCCTTATCATTTGGTATCAGAACTTATTCTATTTTCATATCATTTGGTATTAGAGACAACTAAGAAGTGGACTGATCTAAATCGAAAGACAGTGGAAGGCATATGTGTAGAAACTAAGGAGATAAAAAGTTACAAGAAGAAGATAAAAATACTTGGAGAGTTTAGTTTTTACGTGGACTTTTTGCCATGTTTTTTATTGGCTATCCCCTGATGTTCAAGGATATTGTTCACCATGAGTTTTTCATCTTGGAATGTCTGTGGAATGGACAGTCTTTGGGCATTCTGTATTATTAAGAAAGTGGTGATACTTTCAATGTCTATTTTAGTGTTTTTTTGTTTATTTTTGCAGGAGGATTTTGTGA

mRNA sequence

ATGGCTTTTGTTAGGTTTGCTTATTGCCTTTTGCTGGTTGCTCTTCCTGTTACATCACTTTCCATCTTGAAGTTTCATCAAGAGGACAAAGATCCAGCTCAAGATAGTTTTGTTTCACTTGAAAAGGAACTAGTTTTAAACAACATTCAAGGAAGAAGATTAGGAGTGAAAGAACTTGTGCTATTGGAAAGTAGGAAAAGCTTGGGAGGTGGGATTAAAGAGAAGATTTCAAGGAAGGCCTTTTTAAGTTCTAATTCCATTGGAGAAAGTGGAGAAAAGAAGAACAAAATTTCATGGTTTGAAAGAAAGAAATTGGGTAGTGGGAGGATTTTGTGA

Coding sequence (CDS)

ATGGCTTTTGTTAGGTTTGCTTATTGCCTTTTGCTGGTTGCTCTTCCTGTTACATCACTTTCCATCTTGAAGTTTCATCAAGAGGACAAAGATCCAGCTCAAGATAGTTTTGTTTCACTTGAAAAGGAACTAGTTTTAAACAACATTCAAGGAAGAAGATTAGGAGTGAAAGAACTTGTGCTATTGGAAAGTAGGAAAAGCTTGGGAGGTGGGATTAAAGAGAAGATTTCAAGGAAGGCCTTTTTAAGTTCTAATTCCATTGGAGAAAGTGGAGAAAAGAAGAACAAAATTTCATGGTTTGAAAGAAAGAAATTGGGTAGTGGGAGGATTTTGTGA

Protein sequence

MAFVRFAYCLLLVALPVTSLSILKFHQEDKDPAQDSFVSLEKELVLNNIQGRRLGVKELVLLESRKSLGGGIKEKISRKAFLSSNSIGESGEKKNKISWFERKKLGSGRIL
Homology
[Close]
BLAST of Sed0004487 vs. NCBI nr
Match: XP_031743131.1 (uncharacterized protein LOC105435861 isoform X2 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 66/112 (58.93%), Postives = 79/112 (70.54%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFHQEDKDPAQDSFVSLEKELVL-NNIQGRRLG-VKE 60
           MAF+RFA C LLV LPVTSLSI+KFHQ+DKD A+D   SL+ EL+  NNI GRRLG  KE
Sbjct: 1   MAFLRFA-CFLLVVLPVTSLSIIKFHQQDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60

Query: 61  LVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKNK---ISWFERKKLG 107
            + +E+ KS G  G KEKIS   F SS S  E+G+KKNK   +S  E KK+G
Sbjct: 61  FMEMENSKSFGKNGSKEKISNMVF-SSASNEENGKKKNKKKEVSSLETKKMG 110

[Close]
BLAST of Sed0004487 vs. NCBI nr
Match: XP_031743130.1 (uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFH-QEDKDPAQDSFVSLEKELVL-NNIQGRRLG-VK 60
           MAF+RFA C LLV LPVTSLSI+KFH QEDKD A+D   SL+ EL+  NNI GRRLG  K
Sbjct: 1   MAFLRFA-CFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAK 60

Query: 61  ELVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKNK---ISWFERKKLG 107
           E + +E+ KS G  G KEKIS   F SS S  E+G+KKNK   +S  E KK+G
Sbjct: 61  EFMEMENSKSFGKNGSKEKISNMVF-SSASNEENGKKKNKKKEVSSLETKKMG 111

[Close]
BLAST of Sed0004487 vs. NCBI nr
Match: KGN48024.2 (hypothetical protein Csa_003208, partial [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFH-QEDKDPAQDSFVSLEKELVL-NNIQGRRLG-VK 60
           MAF+RFA C LLV LPVTSLSI+KFH QEDKD A+D   SL+ EL+  NNI GRRLG  K
Sbjct: 40  MAFLRFA-CFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAK 99

Query: 61  ELVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKNK---ISWFERKKLG 107
           E + +E+ KS G  G KEKIS   F SS S  E+G+KKNK   +S  E KK+G
Sbjct: 100 EFMEMENSKSFGKNGSKEKISNMVF-SSASNEENGKKKNKKKEVSSLETKKMG 150

[Close]
BLAST of Sed0004487 vs. NCBI nr
Match: XP_008445411.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFHQEDKDPAQDSFVSLEKE-LVLNNIQGRRLGV--K 60
           MA VRFA C LLV LPVTSLSI+KFHQ+DKD A+D   SL+ E L  NNI GRRLGV  K
Sbjct: 1   MACVRFA-CFLLVVLPVTSLSIIKFHQQDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 61  ELVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKN---KISWFERKKLG 107
           EL+ +E+ KS G  G KEK S   F SS +  E+G+KKN   K+S  E KK+G
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVF-SSAANEENGKKKNDKKKVSSLETKKMG 111

[Close]
BLAST of Sed0004487 vs. NCBI nr
Match: XP_008445410.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 2.4e-13
Identity = 67/114 (58.77%), Postives = 78/114 (68.42%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFH-QEDKDPAQDSFVSLEKE-LVLNNIQGRRLGV-- 60
           MA VRFA C LLV LPVTSLSI+KFH QEDKD A+D   SL+ E L  NNI GRRLGV  
Sbjct: 1   MACVRFA-CFLLVVLPVTSLSIIKFHQQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLN 60

Query: 61  KELVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKN---KISWFERKKLG 107
           KEL+ +E+ KS G  G KEK S   F SS +  E+G+KKN   K+S  E KK+G
Sbjct: 61  KELMEMENSKSFGKNGSKEKTSNMVF-SSAANEENGKKKNDKKKVSSLETKKMG 112

[Close]
BLAST of Sed0004487 vs. ExPASy TrEMBL
Match: A0A1S3BDI1 (uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 66/113 (58.41%), Postives = 78/113 (69.03%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFHQEDKDPAQDSFVSLEKE-LVLNNIQGRRLGV--K 60
           MA VRFA C LLV LPVTSLSI+KFHQ+DKD A+D   SL+ E L  NNI GRRLGV  K
Sbjct: 1   MACVRFA-CFLLVVLPVTSLSIIKFHQQDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 61  ELVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKN---KISWFERKKLG 107
           EL+ +E+ KS G  G KEK S   F SS +  E+G+KKN   K+S  E KK+G
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVF-SSAANEENGKKKNDKKKVSSLETKKMG 111

[Close]
BLAST of Sed0004487 vs. ExPASy TrEMBL
Match: A0A1S3BDD4 (uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-13
Identity = 67/114 (58.77%), Postives = 78/114 (68.42%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFH-QEDKDPAQDSFVSLEKE-LVLNNIQGRRLGV-- 60
           MA VRFA C LLV LPVTSLSI+KFH QEDKD A+D   SL+ E L  NNI GRRLGV  
Sbjct: 1   MACVRFA-CFLLVVLPVTSLSIIKFHQQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLN 60

Query: 61  KELVLLESRKSLG-GGIKEKISRKAFLSSNSIGESGEKKN---KISWFERKKLG 107
           KEL+ +E+ KS G  G KEK S   F SS +  E+G+KKN   K+S  E KK+G
Sbjct: 61  KELMEMENSKSFGKNGSKEKTSNMVF-SSAANEENGKKKNDKKKVSSLETKKMG 112

[Close]
BLAST of Sed0004487 vs. ExPASy TrEMBL
Match: A0A6J1GIZ1 (uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC111454657 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.2e-11
Identity = 63/116 (54.31%), Postives = 72/116 (62.07%), Query Frame = 0 

Query: 1   MAFVRFAYCLLLVALPVTSLSILKFHQ--EDKDPAQ--DSFVSLEKELVLNNIQG-RRLG 60
           M FVRFA C LLV LP+TSLSI+KFH+  E KD AQ  DSF S EKELV NNI G RRL 
Sbjct: 1   MGFVRFA-CFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASREKELVSNNIGGRRRLE 60

Query: 61  VKELVLLESRKSLGGGIKEKISRKAFLSSNSIGESGEKKNKISWFERKKLGSGRIL 112
           VKE + LE  K          S K  +SS+  GE+G+KK K      KKLG+G  L
Sbjct: 61  VKEGMPLERSK----------SSKMAVSSSFNGENGKKKKK------KKLGNGSSL 99

[Close]
BLAST of Sed0004487 vs. ExPASy TrEMBL
Match: A0A6J1KPF0 (uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.9e-09
Identity = 56/103 (54.37%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 1  MAFVRFAYCLLLVALPVTSLSILKFHQ--EDKDPAQ--DSFVSLEKELVLNNIQG-RRLG 60
          M FVRFA C LLV LP+TSLSI+KFH+  E KD AQ  DSF S EKEL+ NNI G RRL 
Sbjct: 1  MGFVRFA-CFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELLSNNIGGRRRLE 60

Query: 61 VKELVLLESRKSLGGGIKEKISRKAFLSSNSIGESGEKKNKIS 99
          V+E + LES K          S K  + S+  GE+G+KK K S
Sbjct: 61 VQEGMPLESSK----------SSKMAVPSSFNGENGKKKKKKS 92

The following BLAST results are available for this feature:
BLAST of Sed0004487 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031743131.11.5e-1558.93uncharacterized protein LOC105435861 isoform X2 [Cucumis sativus][more]
XP_031743130.11.7e-1459.29uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus][more]
KGN48024.21.7e-1459.29hypothetical protein Csa_003208, partial [Cucumis sativus][more]
XP_008445411.12.2e-1458.41PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo][more]
XP_008445410.12.4e-1358.77PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo][more]
BLAST of Sed0004487 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0004487 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BDI11.1e-1458.41uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BDD41.2e-1358.77uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1GIZ14.2e-1154.31uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC1114546... [more]
A0A6J1KPF03.9e-0954.37uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054... [more]
BLAST of Sed0004487 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004487.1Sed0004487.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0016791 phosphatase activity