Sed0004459 (gene) Chayote v1

Overview
NameSed0004459
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
LocationLG07: 38048001 .. 38050156 (+)
RNA-Seq ExpressionSed0004459
SyntenySed0004459
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCGATCAGTGGCGCCGCCGGTAGCCGGTGGTGATCTTGCGGCATGGCTGAGAACAGAGACATTACTCAAAGAAACCCTAAACTTGCGAGGTCGTTAAGAGGAAGTGTCCAGAAATCAGGGGAGAATAAAGATGAGAAAGCAGCTAACGTTGTCACTGTTCCGTTACCGGAAGTCGTTGCTCTGCCGCCGTTGGCGGTTGAGGAAAAGCGCTGTGGGAAGTTTTCGCATCCGGTTATCCGGTGGTCGGTATGATTCGTTCTCCATTTTTTTAATTTATTGCCTTCAAAAAAACTTTTTTTATGTTAAAAAAAAAAAAAACTATTTTCATTCCTAAATTTTTTATAAAAATTCAACCGCGGGACTTTGAACCCTAAAATTATGGTGTGTTTGGGGCAGTTTATGCAAATAATCGGGTTTGTTATAATAATTCAACCAATGTTTGACCTACCATTTTTAGATAGATGGTCATTGAGGATTGAATTTATCATCTTATACACCTTAATACCCTCTTTCACCAATTGAATCGCTCCATAATTGTTATTCAGACTCACTATTCAAGAGATTATATATATCTCTATATATCCTTAAATTGTTAAATGAAAAAAAGAAGTTTGAGCTTTATTTTAAAATTTCTGTTTATTTAGTTAAAAACTTAAATTTACAGATTTTTTTTTATTCGATATCATTAAATTCCCGTACTCTTTTTTGTAGGACTTCTACATGTATATTACAAAATGGTTAAAATATTATATGAGTAGCACAATAATGAAAATATTTGTACACATGACAAAAAATGTAAATTGATAGACTTCTATATTGATAGATTCTATCAAAGAGGCTAATGGAATCATTACTAATAAATAAAGAAAATTGATAGACTTCCATTAGATTCTATCAATAAGGACTCATAGAATAAATTACTAATAAAATTGATAGACTTCCATCACCAAAAAATGATAGATTCTATCAAAGTGTTCGATAAAAAAGGTATATAGAGATTTTTTTAAAAAAATGAGAATTTGGAATTATTTTAAACAGTTGCTATAATTATAAATAGGCAAAAAGTTGTTATACAAGTTCCAATTCCATTTTTTATCTTAAATTTCCGTACTCTTTAGTTAATCGAAATTGATTTAAAAATTCAAATAGAAGAAATGATCAGGCTAATATATTTTTTTAATTTATGGAATAAAAGGTGATAGACAATTTAAATGAAAAAAATTAACAATAAACCTATCAATAAATTGCAAGTTATACTTTTAAGTACATCTTTTATAGAAAGTAAAATTGAGACTAAATTCATTTTCAAAAAATAAATAAATAAAATTGAGACTAAAGTCAGACAAATTTTTAAGTACATCTTTCAAAATAAAATTCTGAGACTAATAATTGTCCATAATCTCGTGCTAAATAGTAGTTTAAGAAAATTTTATAATCTTTTAAACGGTTCCAAATGTATCATGTGACACGTACCCTAAAAGAAACTTTCATTTTTGTTTAATTTTAGTTATCGTACTTTTAATATAATTTAAAATTAAATCTATATAAAAACTTCATATTCATTGTTATTTAAATTGGCTTGATTATAATTTTAAGACTATTTCTAAAATTATTAGCTAAACTTGTAAATCGAACTTTCATAATCTTAGCTCTATTTGACCATTTTCATCCTATCTTATAATTCTATTTCAGTTGAATTTCGCTATGATTCCTTGGCCTATACATATTTCATTTGCCGTAGTTTTTTTTATTATTATTATTTTTAAACCTATTTTCCTTAGTTTTTATGAAAAAAATGGGAAGAAAAAAAAATTAATTAATTTCTTGTGGCTGATTTCATCTGCTTTTTCAGTTATATGCTTTAGGAGGATACCTTATCGTAAGGTGGGCTTGGAATAAATGGAAGCCTGAGAGTGAGGACGACGAAGACAAAAAATAAGTTTTATTTACCAAAACCAATTTGTTAAATGCAATATGGTTGCCAATTTATTTTACTATGATTCTTGTGTTTGTAAATTATAAGTTTCGAAATTGCTTACAATTTTACTTGAATTTGTTTTCTTTTCAATAAAATGTAAAATTTAAATCAATCTATTTATTTAAATTTCTATTGGTTATCAAA

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCGATCAGTGGCGCCGCCGGTAGCCGGTGGTGATCTTGCGGCATGGCTGAGAACAGAGACATTACTCAAAGAAACCCTAAACTTGCGAGGTCGTTAAGAGGAAGTGTCCAGAAATCAGGGGAGAATAAAGATGAGAAAGCAGCTAACGTTGTCACTGTTCCGTTACCGGAAGTCGTTGCTCTGCCGCCGTTGGCGGTTGAGGAAAAGCGCTGTGGGAAGTTTTCGCATCCGGTTATCCGGTGGTCGTTATATGCTTTAGGAGGATACCTTATCGTAAGGTGGGCTTGGAATAAATGGAAGCCTGAGAGTGAGGACGACGAAGACAAAAAATAAGTTTTATTTACCAAAACCAATTTGTTAAATGCAATATGGTTGCCAATTTATTTTACTATGATTCTTGTGTTTGTAAATTATAAGTTTCGAAATTGCTTACAATTTTACTTGAATTTGTTTTCTTTTCAATAAAATGTAAAATTTAAATCAATCTATTTATTTAAATTTCTATTGGTTATCAAA

Coding sequence (CDS)

ATGGCTGAGAACAGAGACATTACTCAAAGAAACCCTAAACTTGCGAGGTCGTTAAGAGGAAGTGTCCAGAAATCAGGGGAGAATAAAGATGAGAAAGCAGCTAACGTTGTCACTGTTCCGTTACCGGAAGTCGTTGCTCTGCCGCCGTTGGCGGTTGAGGAAAAGCGCTGTGGGAAGTTTTCGCATCCGGTTATCCGGTGGTCGTTATATGCTTTAGGAGGATACCTTATCGTAAGGTGGGCTTGGAATAAATGGAAGCCTGAGAGTGAGGACGACGAAGACAAAAAATAA

Protein sequence

MAENRDITQRNPKLARSLRGSVQKSGENKDEKAANVVTVPLPEVVALPPLAVEEKRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDKK
Homology
BLAST of Sed0004459 vs. NCBI nr
Match: XP_022985696.1 (uncharacterized protein LOC111483672 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 9.1e-17
Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1  MAENRDITQRNPKLARSLRGSVQKSGENKDE------KAANVVTVPLPEVVALPPLAVEE 60
          M E RDI   NPK+A     +  KSG+N++E      +  NVVT+P  EV   PPLA E 
Sbjct: 1  MVEYRDIVPTNPKVAWFWPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAEC 60

Query: 61 KRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
          KR GKFSHP IRWSLYALGG++I RWA  +WK  S +DE K
Sbjct: 61 KRPGKFSHPAIRWSLYALGGFIIARWALKRWK--SGEDEGK 99

BLAST of Sed0004459 vs. NCBI nr
Match: XP_011655848.1 (uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical protein Csa_008804 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 52/104 (50.00%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGSVQKSGE--------NKDEKAANVVTVPLPEVVALPPLAV 60
           MAEN +   RNPKL   +R + QK           N  E  + VVT+P PEVV  PP+  
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60

Query: 61  EEKRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDKK 97
           E K  GKFSHP I WSL ALGG+ I+++AW KWKP  +DDE KK
Sbjct: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKP--KDDETKK 102

BLAST of Sed0004459 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-15
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGS--VQKSGENKDE------KAANVVTVPLPEVVALPPLAV 60
           M +NRDI   NP+L  S   S  + K G+N+ +      +  N+VT+P  EV   PPL  
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  EEKRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
           E KR GKFSHP IRW LYALGG+LI RWA  KWK  S +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWK--SGEDEGK 117

BLAST of Sed0004459 vs. NCBI nr
Match: XP_023553666.1 (uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-15
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGSVQKSGENKDE------KAANVVTVPLPEVVALPPLAVEE 60
           M +NRDI   +PK+  S   ++ K G+N+ +      +  N+VT+P  +V   PPL  E 
Sbjct: 17  MVDNRDIVPTDPKVTWSWSRNLNKLGDNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTAEC 76

Query: 61  KRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
           KR GKFSHP IRW LYALGG+LI RWA  KWK  S +DE K
Sbjct: 77  KRPGKFSHPAIRWPLYALGGFLIARWALKKWK--SGEDEGK 115

BLAST of Sed0004459 vs. NCBI nr
Match: KAG6601203.1 (hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGS--VQKSGENKDE------KAANVVTVPLPEVVALPPLAV 60
           M +NRDI   NP+L  S   S  + K G+N+ +      +  N+VT+P  EV   PPL  
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTA 76

Query: 61  EEKRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
           E KR GKFSHP IRW LYALGG+LI RWA  KWK  S +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWK--SGEDEGK 117

BLAST of Sed0004459 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.4e-17
Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1  MAENRDITQRNPKLARSLRGSVQKSGENKDE------KAANVVTVPLPEVVALPPLAVEE 60
          M E RDI   NPK+A     +  KSG+N++E      +  NVVT+P  EV   PPLA E 
Sbjct: 1  MVEYRDIVPTNPKVAWFWPRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAEC 60

Query: 61 KRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
          KR GKFSHP IRWSLYALGG++I RWA  +WK  S +DE K
Sbjct: 61 KRPGKFSHPAIRWSLYALGGFIIARWALKRWK--SGEDEGK 99

BLAST of Sed0004459 vs. ExPASy TrEMBL
Match: A0A0A0KRF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.5e-17
Identity = 52/104 (50.00%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGSVQKSGE--------NKDEKAANVVTVPLPEVVALPPLAV 60
           MAEN +   RNPKL   +R + QK           N  E  + VVT+P PEVV  PP+  
Sbjct: 1   MAENEENIMRNPKLPSFVRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKA 60

Query: 61  EEKRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDKK 97
           E K  GKFSHP I WSL ALGG+ I+++AW KWKP  +DDE KK
Sbjct: 61  EIKHHGKFSHPAIVWSLCALGGFFIIKFAWKKWKP--KDDETKK 102

BLAST of Sed0004459 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-15
Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGS--VQKSGENKDE------KAANVVTVPLPEVVALPPLAV 60
           M +NRDI   NP+L  S   S  + K G+N+ +      +  N+VT+P  EV   PPL  
Sbjct: 17  MVDNRDIVPTNPQLTWSWSWSRNLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTA 76

Query: 61  EEKRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
           E KR GKFSHP IRW LYALGG+LI RWA  KWK  S +DE K
Sbjct: 77  ECKRPGKFSHPAIRWPLYALGGFLIARWALKKWK--SGEDEGK 117

BLAST of Sed0004459 vs. ExPASy TrEMBL
Match: A0A6J1CDG9 (uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010218 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 43/90 (47.78%), Postives = 52/90 (57.78%), Query Frame = 0

Query: 10 RNPKLARSLRGSVQKSGENKD----EKAANVVTVPLPEVVALPPLAVEEKRCGKFSHPVI 69
          RNP        +  K G+  +     +  NVV VP  +VVA PPL  E K   KFSHP I
Sbjct: 6  RNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAI 65

Query: 70 RWSLYALGGYLIVRWAWNKWKPESEDDEDK 96
          RW LY+LGGYLI+RWAW +WK    D +DK
Sbjct: 66 RWPLYSLGGYLILRWAWTRWKESQSDGDDK 95

BLAST of Sed0004459 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 1   MAENRDITQRNPKLARSLRGS------VQKSGENKDEKAANVVTVPLPEVVALPPLAVEE 60
           MAEN++   +NPKL   +  +       QK  E    +  +VVT+P   VV+ PP+  E 
Sbjct: 1   MAENKEHIIQNPKLPSFVLNNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEF 60

Query: 61  KRCGKFSHPVIRWSLYALGGYLIVRWAWNKWKPESEDDEDKK 97
           K  GKFSHP + W L ALGG+LI+ WAW KW+P  +DDE KK
Sbjct: 61  KFPGKFSHPAVLWPLSALGGFLIIWWAWQKWRP--DDDETKK 100

BLAST of Sed0004459 vs. TAIR 10
Match: AT3G52230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 29/90 (32.22%), Postives = 47/90 (52.22%), Query Frame = 0

Query: 9   QRNPKLARSLRGSVQKSGENKDEKAA-NVVTVPLPEVVALPPLAVE-EKRCGKFSHPVIR 68
           Q  P  A     + + +GE +  K+    VT P     +  P+  E E   G+ S+ VI 
Sbjct: 34  QPKPPPATIDANAPKPTGEKEPLKSTYETVTFPYNPPKSAEPIKFEAEPSSGRTSNSVIL 93

Query: 69  WSLYALGGYLIVRWAWNKWKPESEDDEDKK 97
           W +YALGG+L+++WAW +W   +E  + K+
Sbjct: 94  WQVYALGGFLVLKWAWARWNERNERSDKKE 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022985696.19.1e-1753.47uncharacterized protein LOC111483672 [Cucurbita maxima][more]
XP_011655848.11.5e-1650.00uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical ... [more]
XP_022957161.16.5e-1550.49uncharacterized protein LOC111458630 [Cucurbita moschata][more]
XP_023553666.16.5e-1548.51uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo][more]
KAG6601203.11.1e-1450.49hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J8Z14.4e-1753.47uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672... [more]
A0A0A0KRF37.5e-1750.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1[more]
A0A6J1GYG53.1e-1550.49uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586... [more]
A0A6J1CDG91.3e-1347.78uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A1S3BGK51.7e-1345.10uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=... [more]
Match NameE-valueIdentityDescription
AT3G52230.13.1e-0732.22unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR36374:SF1OS01G0969000 PROTEINcoord: 22..93
NoneNo IPR availablePANTHERPTHR36374OS01G0969000 PROTEINcoord: 22..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004459.1Sed0004459.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity