Sed0004444 (gene) Chayote v1

Overview
NameSed0004444
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG11: 27691635 .. 27693312 (-)
RNA-Seq ExpressionSed0004444
SyntenySed0004444
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTCTCTCTTGACTTAATTCTAAGTATCCTCTTTCCCAAAATGATCTTATAAATCAATTTTCTTTAAAGAAATATCTCATCCTTCCTTACAAACTCCCCTTATTTTAATATTAAATCCCGTTCCCGCTCTATCCCCAACCGGAGCGATGAACAGCATTTCAGCGCACACCGCGATTCCGACCCGATTCCGACCCGATTCCAACCCGACTTCCCCAACCAAAATCATCTTCCCTCGCTCTGCCAATTCCTCAAATCACAAATTTACCGCAAATTCTATTGACCCAATTGTTGTATGGACCTCTTCGATTGCTCGCCACTGCCGCAACGGCCAATTGGCCGAAGCCGCCGCCGAGCTTACGCGCATGAGGCTCGCCGGAGTTGAGCCAAACCACATCACATTCATTACACTCATCTCCGGCTGCGCTGATTTTCCCTCACGCAGCCTCTACTTCGGCTCTTCGCTTCACGGTTACGCCCGTAAGTTCGGGTTGGATACAGGGCATGTAATGGTGGGCACTGCTCTAATTGGTATGTATTCTAAATTTGGTCAGTTGGGTCTTGGTAGGAAGGTTTTTGATTATCTGGGTATGAAAAACTCCGTCACTTGGAACACTATGCTTGATGGGTACATGAGGAATGGAGAGGTTGAGTTTGCCCTCAACCTGTTCGATGAAATGCCTACGAGAGATGCGATTTCTTGGACGGCTTTGATTAATGGTCTTTTGAAACAGGGGTACTCGGAACAAGCATTGGAGTGTTTTCATCTCATGCAATGCTCGGGTGTTGAGCCTGATTATGTGTCTGTAATTGCTGTTCTTGCTGCTTGTGCTGATTTGGGTACACTTACTTTAGGGTTATGGGTTAATCGGTTCGTTATGCAGCAGGAATTTAAGGGTAATATTAGGGTAAATAATTCTTTGATAGATATGTATTCTCGTTGTGGATGTATTGGGTTTGCCCGCCAAGTGTTTGAGAAAATGCCCAACCGAACTTTAGTGTCTTGGAACTCTATTATTGTGGGATTTGCTGTTAATAGTTATGCAGAGGAGTCTCTGGAGTTTTTTGATGCAATGCAAAGGGAAGGATTCAAGCCAGATGGGGTTAGCTACACAGGCGCTCTTACGGCGTGTAGCCATGCGGGATTAGTGAATAAGGGGCTGGAATTGTTTGATAACATGAAGAGAATGCACAGAATTACTCCTAGGATTGAGCATTATGGGTGCATTGTTGACCTCTACGGCCGCGCAGGAAGGTTGGAGGAAGCATTGAGTGTCATCGAGAAGATGCCGTTGAAACCTAATGAAGTTGTACTCGGGTCGCTACTGGCTGCCTGCAGGACTCATGGTGATGTGAGTCTGGCTGAAAGGTTGATGAAACATCTCTTTAAGTTGGACCCTGGAGGCGATTCGAATTATGTGCTCCTTTCGAACATATACGCATCAATTGGGAAGTGGGAAGGTGCTAACAAGGTCCGGAGAACAATGAAAGCTCGAGGCGTGCAGAAAAAACCCGGGTTTAGTTCTGTAGAGATTGATGGTAAGGTTCACGAGTTTGTTTCTGGTGATAAATACCATGATGATGCAGACAATATTTACTCGATGTTAGGGTTGTTGTTTCATGAACTAGAGATATGTGGCTATGTTCCTGAAAAAGATGAATCTAGTAAAGATCAATGA

mRNA sequence

GTTTTCTCTCTTGACTTAATTCTAAGTATCCTCTTTCCCAAAATGATCTTATAAATCAATTTTCTTTAAAGAAATATCTCATCCTTCCTTACAAACTCCCCTTATTTTAATATTAAATCCCGTTCCCGCTCTATCCCCAACCGGAGCGATGAACAGCATTTCAGCGCACACCGCGATTCCGACCCGATTCCGACCCGATTCCAACCCGACTTCCCCAACCAAAATCATCTTCCCTCGCTCTGCCAATTCCTCAAATCACAAATTTACCGCAAATTCTATTGACCCAATTGTTGTATGGACCTCTTCGATTGCTCGCCACTGCCGCAACGGCCAATTGGCCGAAGCCGCCGCCGAGCTTACGCGCATGAGGCTCGCCGGAGTTGAGCCAAACCACATCACATTCATTACACTCATCTCCGGCTGCGCTGATTTTCCCTCACGCAGCCTCTACTTCGGCTCTTCGCTTCACGGTTACGCCCGTAAGTTCGGGTTGGATACAGGGCATGTAATGGTGGGCACTGCTCTAATTGGTATGTATTCTAAATTTGGTCAGTTGGGTCTTGGTAGGAAGGTTTTTGATTATCTGGGTATGAAAAACTCCGTCACTTGGAACACTATGCTTGATGGGTACATGAGGAATGGAGAGGTTGAGTTTGCCCTCAACCTGTTCGATGAAATGCCTACGAGAGATGCGATTTCTTGGACGGCTTTGATTAATGGTCTTTTGAAACAGGGGTACTCGGAACAAGCATTGGAGTGTTTTCATCTCATGCAATGCTCGGGTGTTGAGCCTGATTATGTGTCTGTAATTGCTGTTCTTGCTGCTTGTGCTGATTTGGGTACACTTACTTTAGGGTTATGGGTTAATCGGTTCGTTATGCAGCAGGAATTTAAGGGTAATATTAGGGTAAATAATTCTTTGATAGATATGTATTCTCGTTGTGGATGTATTGGGTTTGCCCGCCAAGTGTTTGAGAAAATGCCCAACCGAACTTTAGTGTCTTGGAACTCTATTATTGTGGGATTTGCTGTTAATAGTTATGCAGAGGAGTCTCTGGAGTTTTTTGATGCAATGCAAAGGGAAGGATTCAAGCCAGATGGGGTTAGCTACACAGGCGCTCTTACGGCGTGTAGCCATGCGGGATTAGTGAATAAGGGGCTGGAATTGTTTGATAACATGAAGAGAATGCACAGAATTACTCCTAGGATTGAGCATTATGGGTGCATTGTTGACCTCTACGGCCGCGCAGGAAGGTTGGAGGAAGCATTGAGTGTCATCGAGAAGATGCCGTTGAAACCTAATGAAGTTGTACTCGGGTCGCTACTGGCTGCCTGCAGGACTCATGGTGATGTGAGTCTGGCTGAAAGGTTGATGAAACATCTCTTTAAGTTGGACCCTGGAGGCGATTCGAATTATGTGCTCCTTTCGAACATATACGCATCAATTGGGAAGTGGGAAGGTGCTAACAAGGTCCGGAGAACAATGAAAGCTCGAGGCGTGCAGAAAAAACCCGGGTTTAGTTCTGTAGAGATTGATGGTAAGGTTCACGAGTTTGTTTCTGGTGATAAATACCATGATGATGCAGACAATATTTACTCGATGTTAGGGTTGTTGTTTCATGAACTAGAGATATGTGGCTATGTTCCTGAAAAAGATGAATCTAGTAAAGATCAATGA

Coding sequence (CDS)

ATGAACAGCATTTCAGCGCACACCGCGATTCCGACCCGATTCCGACCCGATTCCAACCCGACTTCCCCAACCAAAATCATCTTCCCTCGCTCTGCCAATTCCTCAAATCACAAATTTACCGCAAATTCTATTGACCCAATTGTTGTATGGACCTCTTCGATTGCTCGCCACTGCCGCAACGGCCAATTGGCCGAAGCCGCCGCCGAGCTTACGCGCATGAGGCTCGCCGGAGTTGAGCCAAACCACATCACATTCATTACACTCATCTCCGGCTGCGCTGATTTTCCCTCACGCAGCCTCTACTTCGGCTCTTCGCTTCACGGTTACGCCCGTAAGTTCGGGTTGGATACAGGGCATGTAATGGTGGGCACTGCTCTAATTGGTATGTATTCTAAATTTGGTCAGTTGGGTCTTGGTAGGAAGGTTTTTGATTATCTGGGTATGAAAAACTCCGTCACTTGGAACACTATGCTTGATGGGTACATGAGGAATGGAGAGGTTGAGTTTGCCCTCAACCTGTTCGATGAAATGCCTACGAGAGATGCGATTTCTTGGACGGCTTTGATTAATGGTCTTTTGAAACAGGGGTACTCGGAACAAGCATTGGAGTGTTTTCATCTCATGCAATGCTCGGGTGTTGAGCCTGATTATGTGTCTGTAATTGCTGTTCTTGCTGCTTGTGCTGATTTGGGTACACTTACTTTAGGGTTATGGGTTAATCGGTTCGTTATGCAGCAGGAATTTAAGGGTAATATTAGGGTAAATAATTCTTTGATAGATATGTATTCTCGTTGTGGATGTATTGGGTTTGCCCGCCAAGTGTTTGAGAAAATGCCCAACCGAACTTTAGTGTCTTGGAACTCTATTATTGTGGGATTTGCTGTTAATAGTTATGCAGAGGAGTCTCTGGAGTTTTTTGATGCAATGCAAAGGGAAGGATTCAAGCCAGATGGGGTTAGCTACACAGGCGCTCTTACGGCGTGTAGCCATGCGGGATTAGTGAATAAGGGGCTGGAATTGTTTGATAACATGAAGAGAATGCACAGAATTACTCCTAGGATTGAGCATTATGGGTGCATTGTTGACCTCTACGGCCGCGCAGGAAGGTTGGAGGAAGCATTGAGTGTCATCGAGAAGATGCCGTTGAAACCTAATGAAGTTGTACTCGGGTCGCTACTGGCTGCCTGCAGGACTCATGGTGATGTGAGTCTGGCTGAAAGGTTGATGAAACATCTCTTTAAGTTGGACCCTGGAGGCGATTCGAATTATGTGCTCCTTTCGAACATATACGCATCAATTGGGAAGTGGGAAGGTGCTAACAAGGTCCGGAGAACAATGAAAGCTCGAGGCGTGCAGAAAAAACCCGGGTTTAGTTCTGTAGAGATTGATGGTAAGGTTCACGAGTTTGTTTCTGGTGATAAATACCATGATGATGCAGACAATATTTACTCGATGTTAGGGTTGTTGTTTCATGAACTAGAGATATGTGGCTATGTTCCTGAAAAAGATGAATCTAGTAAAGATCAATGA

Protein sequence

MNSISAHTAIPTRFRPDSNPTSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYVPEKDESSKDQ
Homology
BLAST of Sed0004444 vs. NCBI nr
Match: XP_038877228.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa hispida])

HSP 1 Score: 873.6 bits (2256), Expect = 8.2e-250
Identity = 427/524 (81.49%), Postives = 469/524 (89.50%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFRPDSNPTS------PTKIIFPRSANSSNH----KFTANSIDPIVVW 60
           M+S  ++TAIP++ +   NP S      PTK+ FPRS NSS+     KF ANSIDPIV+W
Sbjct: 1   MSSSPSYTAIPSQLQQYPNPPSSIPLSNPTKLNFPRSPNSSHRNISSKFPANSIDPIVLW 60

Query: 61  TSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYA 120
           TSS+AR+CRNGQL+EAA E TRMRLAGVEPNH+TFITL+SGC DFPS SL+FGSSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAATEFTRMRLAGVEPNHVTFITLLSGCTDFPSESLFFGSSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFA 180
           RK GLDTGHVMVGTAL+ MY+K  Q  L RKVFDYLGMKNSVTWNTMLDGY RNGE+E A
Sbjct: 121 RKLGLDTGHVMVGTALVDMYAKCAQSRLARKVFDYLGMKNSVTWNTMLDGYTRNGEIELA 180

Query: 181 LNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADL 240
           ++LFDEMPTRDAISWTALINGLLKQG+SEQALECFH MQCSG+EPDYVS+IAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGFSEQALECFHQMQCSGIEPDYVSIIAVLAACADL 240

Query: 241 GTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSII 300
           G LTLGLWVNRFVMQQEFK NIR++NSL+DMYSRCGCI FARQVFEKMP RTLVSWNSII
Sbjct: 241 GALTLGLWVNRFVMQQEFKDNIRISNSLVDMYSRCGCIEFARQVFEKMPKRTLVSWNSII 300

Query: 301 VGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRI 360
           VGFAVN +A+ESLEFFDAMQ EGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKR+H+I
Sbjct: 301 VGFAVNGFADESLEFFDAMQNEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRIHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TPRIEHYGCIVDLYGRAGRLE+AL+VIE+MP+KPNEVVLGSLLAACRT+GDVSLAE+LMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNVIEEMPMKPNEVVLGSLLAACRTYGDVSLAEKLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480
           HL KLDP GDSNYVLLSNIYA+IG+WEGANKVRRTMKARGVQKKPG SSVEIDGKVHEFV
Sbjct: 421 HLSKLDPRGDSNYVLLSNIYAAIGRWEGANKVRRTMKARGVQKKPGCSSVEIDGKVHEFV 480

Query: 481 SGDKYHDDADNIYSMLGLLFHELEICGYVPEKD------ESSKD 509
           +GDKYH DADNIYSML LLFHEL+I GYVP+ +      E SKD
Sbjct: 481 AGDKYHADADNIYSMLELLFHELKIYGYVPDTNIILNTKEFSKD 524

BLAST of Sed0004444 vs. NCBI nr
Match: XP_022142716.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica charantia])

HSP 1 Score: 871.3 bits (2250), Expect = 4.1e-249
Identity = 428/524 (81.68%), Postives = 464/524 (88.55%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFRPDSNPT------SPTKIIFPRSANSSNH----KFTANSIDPIVVW 60
           M+SI A+TA   + +   NP       +P  I FPRS NSSN     K T NSIDPIV+W
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYA 120
           TSSIAR+CRNGQLAEAAAE T MRLAGVEPNH+T ITL+SGCADFPS SLYFGSSLHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFA 180
           RK GLDT HVMVGT+++ MY+K  QLGL R+VFDYL MKNSV+WNTMLDGY RNGE+E A
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 LNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADL 240
           ++LFDEMPTRDAISWTALINGLLKQGYSEQALECFH MQCSG++PDYVS+IAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSII 300
           GTLTLGLWVNRFVMQQEFK NIR++NSLIDMYSRCGCIGFARQVFE+M  RTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRI 360
           VG+A N +A+ESLEFFDAMQ+EGFKPD VSYTGALTACSHAGLVNKGLELFDNMKR+HRI
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMK 420
            PRIEHYGCIVDLYGRAGRLE+AL VIEKMP+KPNEVVLGSLLAACRTHGDVSLAERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480
           HL KLDPGGDSNYVLLSNIYA+IGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 SGDKYHDDADNIYSMLGLLFHELEICGYVPEKD------ESSKD 509
           +GDKYH DAD+IYSML LL HEL+ICG VPE +      ESSKD
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKD 524

BLAST of Sed0004444 vs. NCBI nr
Match: XP_023521260.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 859.4 bits (2219), Expect = 1.6e-245
Identity = 415/515 (80.58%), Postives = 462/515 (89.71%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFR-PDSNPTSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCR 60
           M+S+ AHTA+P +F+    + ++P+ + FPR  NSS      N I PIV+WTSSIAR+CR
Sbjct: 1   MSSVPAHTAVPFQFQLQQYSNSNPSNLNFPRYPNSS------NPIKPIVLWTSSIARYCR 60

Query: 61  NGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGH 120
           N QL EAAAE TRMRLAGVEPNHITFITL+SGCADFPS SL+FG+SLHGY RK GLDTGH
Sbjct: 61  NDQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYVRKLGLDTGH 120

Query: 121 VMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPT 180
           VMVGTALI MY+K  QLGL R VFDYL MKNSVTWNTMLDGYMRNGE+E A+ LFDEMPT
Sbjct: 121 VMVGTALIAMYAKCAQLGLARNVFDYLDMKNSVTWNTMLDGYMRNGEIELAIELFDEMPT 180

Query: 181 RDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWV 240
           RDAISWTALING LKQGYSEQALECFH MQCSG+EPDYVS+IAVLAACADLG L+ GLWV
Sbjct: 181 RDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACADLGALSFGLWV 240

Query: 241 NRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYA 300
           NRF+MQQEFK NIR++NSLIDMYSRCGCI FARQVF+KMP RTLVSWNS+IVGFA+N +A
Sbjct: 241 NRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMPKRTLVSWNSMIVGFAINGFA 300

Query: 301 EESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGC 360
           +ESLEFFDAMQ+EGFK DGVSYTGALTACSHAGLVNKGLELFDNMKR+HRITPRIEHYGC
Sbjct: 301 DESLEFFDAMQKEGFKADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRITPRIEHYGC 360

Query: 361 IVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLFKLDPGG 420
           IVDLY RAGRL+EAL+VIE MP+KPNEVVLGSLLAACRTHGDVSLAERL+K+LF+LDPGG
Sbjct: 361 IVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIKYLFELDPGG 420

Query: 421 DSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDA 480
           DS+YVLLSNIYA++G+WEGANKVRRTMKARGVQKKPGFSS+EIDGKVHEFV+GDKYH DA
Sbjct: 421 DSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHEFVAGDKYHADA 480

Query: 481 DNIYSMLGLLFHELEICGYVPEK------DESSKD 509
           DNIYSML +LFHEL+ICGYVPE       +ESSK+
Sbjct: 481 DNIYSMLEVLFHELKICGYVPETATLMNGNESSKE 509

BLAST of Sed0004444 vs. NCBI nr
Match: KAG7012718.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 857.4 bits (2214), Expect = 6.1e-245
Identity = 414/515 (80.39%), Postives = 462/515 (89.71%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFR-PDSNPTSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCR 60
           M+S+ AHTAIP +F+    + ++P+ + FPR  NSS      N I PIV+WTSSIAR+CR
Sbjct: 1   MSSVPAHTAIPFQFQLQQYSNSNPSNLNFPRYPNSS------NPIKPIVLWTSSIARYCR 60

Query: 61  NGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGH 120
           N QLAEAAAE TRMRLAGVEPNHITFITL+SGCADFPS SL+FG+SLHGY RK GLDTGH
Sbjct: 61  NAQLAEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYVRKLGLDTGH 120

Query: 121 VMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPT 180
           VMVGTALI MY+K  QLGL R VFDYL MKNSVTWNTMLDGYMRNGE+E A+ LFDEMPT
Sbjct: 121 VMVGTALIAMYAKCAQLGLARNVFDYLDMKNSVTWNTMLDGYMRNGEIELAIELFDEMPT 180

Query: 181 RDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWV 240
           RDAISWTALING LKQGYSEQAL+CFH MQCSG+EPDYVS+IAVLAACADLG L+ GLWV
Sbjct: 181 RDAISWTALINGFLKQGYSEQALDCFHEMQCSGIEPDYVSIIAVLAACADLGALSFGLWV 240

Query: 241 NRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYA 300
           NRF+MQQEFK NIR++NSLIDMYSRCGCI F+RQVF+KMP RTLVSWNS+IVGFA+N +A
Sbjct: 241 NRFLMQQEFKDNIRISNSLIDMYSRCGCIEFSRQVFDKMPKRTLVSWNSMIVGFAINGFA 300

Query: 301 EESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGC 360
           +ESLEFFDAMQ+EGFK DGVSYTGALTACSHAGLVNKGLELFDNMKR+HRITPRIEHYGC
Sbjct: 301 DESLEFFDAMQKEGFKADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRITPRIEHYGC 360

Query: 361 IVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLFKLDPGG 420
           IVDLY RAGRL+EAL+VIE MP+KPNEVVLGSLLAACRTHGDVSLAERL+K+LF+LDPGG
Sbjct: 361 IVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIKYLFELDPGG 420

Query: 421 DSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDA 480
           DS+YVLLSNIYA++G+WEGAN VRRTMKARGVQKKPGFSS+EIDGKVHEFV+GDKYH DA
Sbjct: 421 DSSYVLLSNIYAAVGRWEGANMVRRTMKARGVQKKPGFSSIEIDGKVHEFVAGDKYHADA 480

Query: 481 DNIYSMLGLLFHELEICGYVPEK------DESSKD 509
           DNIYSML +LFHEL+ICGYVPE       +ESSK+
Sbjct: 481 DNIYSMLEVLFHELKICGYVPETATFMNGNESSKE 509

BLAST of Sed0004444 vs. NCBI nr
Match: XP_022945035.1 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita moschata])

HSP 1 Score: 855.5 bits (2209), Expect = 2.3e-244
Identity = 414/515 (80.39%), Postives = 460/515 (89.32%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFR-PDSNPTSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCR 60
           M+S+ AHTAIP +F+    + ++P+ + FPR  NSS      N I PIV+WTSSIAR+CR
Sbjct: 1   MSSVPAHTAIPFQFQLQQYSNSNPSNLNFPRYPNSS------NPIKPIVLWTSSIARYCR 60

Query: 61  NGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGH 120
           N QL EAAAE TRMRLAGVEPNHITFITL+SGCADFPS SL+FG+SLHGY RK GLDTGH
Sbjct: 61  NAQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYVRKLGLDTGH 120

Query: 121 VMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPT 180
           VMVGTALI MY+K  QLGL R VFDYL MKNSVTWNTMLDGYMRNGE+E A+ LFDEMPT
Sbjct: 121 VMVGTALIAMYAKCAQLGLARNVFDYLDMKNSVTWNTMLDGYMRNGEIELAIELFDEMPT 180

Query: 181 RDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWV 240
           RDAISWTALING LKQGYSEQAL+CFH MQCSG+EPDYVS+IAVLAACADLG L+ GLWV
Sbjct: 181 RDAISWTALINGFLKQGYSEQALDCFHEMQCSGIEPDYVSIIAVLAACADLGALSFGLWV 240

Query: 241 NRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYA 300
           NRF+MQQEFK NIR++NSLIDMYSRCGCI FARQVF+KMP RTLVSWNS+IVGFA N +A
Sbjct: 241 NRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMPKRTLVSWNSMIVGFATNGFA 300

Query: 301 EESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGC 360
           +ESLEFFDAMQ+EGFK DGVSYTGALTACSHAGLVNKGLELFDNMKR+HRITPRIEHYGC
Sbjct: 301 DESLEFFDAMQKEGFKADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRITPRIEHYGC 360

Query: 361 IVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLFKLDPGG 420
           IVDLY RAGRL+EAL+VIE MP+KPNEVVLGSLLAACRTHGDVSLAERL+K+LF+LDPGG
Sbjct: 361 IVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIKYLFELDPGG 420

Query: 421 DSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDA 480
           DS+YVLLSNIYA++G+WEGAN VRRTMKARGVQKKPGFSS+EIDGKVHEFV+GDKYH DA
Sbjct: 421 DSSYVLLSNIYAAVGRWEGANMVRRTMKARGVQKKPGFSSIEIDGKVHEFVAGDKYHADA 480

Query: 481 DNIYSMLGLLFHELEICGYVPEK------DESSKD 509
           DNIYSML +LFHEL+ICGYVPE       +ESSK+
Sbjct: 481 DNIYSMLEVLFHELKICGYVPETATFMNGNESSKE 509

BLAST of Sed0004444 vs. ExPASy Swiss-Prot
Match: Q9MA50 (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE247 PE=2 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 3.1e-167
Identity = 288/482 (59.75%), Postives = 357/482 (74.07%), Query Frame = 0

Query: 21  TSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEP 80
           TSP  I     AN    +   ++ +  V WTS I    RNG+LAEAA E + M LAGVEP
Sbjct: 10  TSPALITHKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEP 69

Query: 81  NHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGHVMVGTALIGMYSKFGQLGLGR 140
           NHITFI L+SGC DF S S   G  LHGYA K GLD  HVMVGTA+IGMYSK G+    R
Sbjct: 70  NHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKAR 129

Query: 141 KVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQ 200
            VFDY+  KNSVTWNTM+DGYMR+G+V+ A  +FD+MP RD ISWTA+ING +K+GY E+
Sbjct: 130 LVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEE 189

Query: 201 ALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLID 260
           AL  F  MQ SGV+PDYV++IA L AC +LG L+ GLWV+R+V+ Q+FK N+RV+NSLID
Sbjct: 190 ALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLID 249

Query: 261 MYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYAEESLEFFDAMQREGFKPDGVS 320
           +Y RCGC+ FARQVF  M  RT+VSWNS+IVGFA N  A ESL +F  MQ +GFKPD V+
Sbjct: 250 LYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVT 309

Query: 321 YTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKM 380
           +TGALTACSH GLV +GL  F  MK  +RI+PRIEHYGC+VDLY RAGRLE+AL +++ M
Sbjct: 310 FTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369

Query: 381 PLKPNEVVLGSLLAACRTHG-DVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGA 440
           P+KPNEVV+GSLLAAC  HG ++ LAERLMKHL  L+    SNYV+LSN+YA+ GKWEGA
Sbjct: 370 PMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGA 429

Query: 441 NKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYV 500
           +K+RR MK  G++K+PGFSS+EID  +H F++GD  H +   I  +L L+  +L + G V
Sbjct: 430 SKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCV 489

Query: 501 PE 502
            E
Sbjct: 490 VE 491

BLAST of Sed0004444 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 8.6e-101
Identity = 181/448 (40.40%), Postives = 276/448 (61.61%), Query Frame = 0

Query: 55  ARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFG 114
           + + R G   EA      M  +GV P+ I+ ++ IS C+    R++ +G S HGY  + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHGYVLRNG 369

Query: 115 LDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLF 174
            ++    +  ALI MY K  +     ++FD +  K  VTWN+++ GY+ NGEV+ A   F
Sbjct: 370 FESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 429

Query: 175 DEMPTRDAISWTALINGLLKQGYSEQALECFHLMQC-SGVEPDYVSVIAVLAACADLGTL 234
           + MP ++ +SW  +I+GL++    E+A+E F  MQ   GV  D V+++++ +AC  LG L
Sbjct: 430 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 489

Query: 235 TLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGF 294
            L  W+  ++ +   + ++R+  +L+DM+SRCG    A  +F  + NR + +W + I   
Sbjct: 490 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 549

Query: 295 AVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPR 354
           A+   AE ++E FD M  +G KPDGV++ GALTACSH GLV +G E+F +M ++H ++P 
Sbjct: 550 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 609

Query: 355 IEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLF 414
             HYGC+VDL GRAG LEEA+ +IE MP++PN+V+  SLLAACR  G+V +A    + + 
Sbjct: 610 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 669

Query: 415 KLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGD 474
            L P    +YVLLSN+YAS G+W    KVR +MK +G++K PG SS++I GK HEF SGD
Sbjct: 670 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 729

Query: 475 KYHDDADNIYSMLGLLFHELEICGYVPE 502
           + H +  NI +ML  +       G+VP+
Sbjct: 730 ESHPEMPNIEAMLDEVSQRASHLGHVPD 754

BLAST of Sed0004444 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.2e-96
Identity = 171/471 (36.31%), Postives = 285/471 (60.51%), Query Frame = 0

Query: 33  NSSNHKFTANSIDPIVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGC 92
           N + + F   S   +V W + I R+CR G + EA      M+ + V P+ +    ++S C
Sbjct: 163 NYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSAC 222

Query: 93  ADFPSRSLYFGSSLHGY--ARKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKN 152
               + ++ +  +++ +       +DT H++  TAL+ MY+  G + + R+ F  + ++N
Sbjct: 223 G--RTGNMRYNRAIYEFLIENDVRMDT-HLL--TALVTMYAGAGCMDMAREFFRKMSVRN 282

Query: 153 SVTWNTMLDGYMRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQC 212
                 M+ GY + G ++ A  +FD+   +D + WT +I+  ++  Y ++AL  F  M C
Sbjct: 283 LFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC 342

Query: 213 SGVEPDYVSVIAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGF 272
           SG++PD VS+ +V++ACA+LG L    WV+  +     +  + +NN+LI+MY++CG +  
Sbjct: 343 SGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDA 402

Query: 273 ARQVFEKMPNRTLVSWNSIIVGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSH 332
            R VFEKMP R +VSW+S+I   +++  A ++L  F  M++E  +P+ V++ G L  CSH
Sbjct: 403 TRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSH 462

Query: 333 AGLVNKGLELFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLG 392
           +GLV +G ++F +M   + ITP++EHYGC+VDL+GRA  L EAL VIE MP+  N V+ G
Sbjct: 463 SGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWG 522

Query: 393 SLLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARG 452
           SL++ACR HG++ L +   K + +L+P  D   VL+SNIYA   +WE    +RR M+ + 
Sbjct: 523 SLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKN 582

Query: 453 VQKKPGFSSVEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYVPE 502
           V K+ G S ++ +GK HEF+ GDK H  ++ IY+ L  +  +L++ GYVP+
Sbjct: 583 VFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628

BLAST of Sed0004444 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 5.4e-95
Identity = 176/469 (37.53%), Postives = 280/469 (59.70%), Query Frame = 0

Query: 43  SIDP-IVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLY 102
           +IDP + ++T++I     NG   +A     ++  + + PN  TF +L+  C      S  
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC------STK 149

Query: 103 FGSSLHGYARKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGY 162
            G  +H +  KFGL      V T L+ +Y+K G +   +KVFD +  ++ V+   M+  Y
Sbjct: 150 SGKLIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 163 MRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSG-VEPDYVSV 222
            + G VE A  LFD M  RD +SW  +I+G  + G+   AL  F  +   G  +PD ++V
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 223 IAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPN 282
           +A L+AC+ +G L  G W++ FV     + N++V   LIDMYS+CG +  A  VF   P 
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 283 RTLVSWNSIIVGFAVNSYAEESLEFFDAMQR-EGFKPDGVSYTGALTACSHAGLVNKGLE 342
           + +V+WN++I G+A++ Y++++L  F+ MQ   G +P  +++ G L AC+HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 343 LFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTH 402
           +F++M + + I P+IEHYGC+V L GRAG+L+ A   I+ M +  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 403 GDVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSS 462
           GD  L + + ++L  L+      YVLLSNIYAS+G +EG  KVR  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 463 VEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYVPEKDESSKD 509
           +EI+ KVHEF +GD+ H  +  IY+ML  +   ++  GYVP  +   +D
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQD 551

BLAST of Sed0004444 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 7.0e-95
Identity = 168/464 (36.21%), Postives = 279/464 (60.13%), Query Frame = 0

Query: 39  FTANSIDPIVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSR 98
           FT      +V W S I    + G   +A     +M    V+ +H+T + ++S CA    R
Sbjct: 189 FTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--R 248

Query: 99  SLYFGSSLHGYARKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTML 158
           +L FG  +  Y  +  ++  ++ +  A++ MY+K G +   +++FD +  K++VTW TML
Sbjct: 249 NLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTML 308

Query: 159 DGYMRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQC-SGVEPDY 218
           DGY  + + E A  + + MP +D ++W ALI+   + G   +AL  FH +Q    ++ + 
Sbjct: 309 DGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQ 368

Query: 219 VSVIAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEK 278
           +++++ L+ACA +G L LG W++ ++ +   + N  V ++LI MYS+CG +  +R+VF  
Sbjct: 369 ITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS 428

Query: 279 MPNRTLVSWNSIIVGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKG 338
           +  R +  W+++I G A++    E+++ F  MQ    KP+GV++T    ACSH GLV++ 
Sbjct: 429 VEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEA 488

Query: 339 LELFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACR 398
             LF  M+  + I P  +HY CIVD+ GR+G LE+A+  IE MP+ P+  V G+LL AC+
Sbjct: 489 ESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACK 548

Query: 399 THGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGF 458
            H +++LAE     L +L+P  D  +VLLSNIYA +GKWE  +++R+ M+  G++K+PG 
Sbjct: 549 IHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGC 608

Query: 459 SSVEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYVPE 502
           SS+EIDG +HEF+SGD  H  ++ +Y  L  +  +L+  GY PE
Sbjct: 609 SSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPE 649

BLAST of Sed0004444 vs. ExPASy TrEMBL
Match: A0A6J1CN07 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012760 PE=4 SV=1)

HSP 1 Score: 871.3 bits (2250), Expect = 2.0e-249
Identity = 428/524 (81.68%), Postives = 464/524 (88.55%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFRPDSNPT------SPTKIIFPRSANSSNH----KFTANSIDPIVVW 60
           M+SI A+TA   + +   NP       +P  I FPRS NSSN     K T NSIDPIV+W
Sbjct: 1   MSSIPANTAAAVQLQQYPNPATSIPLPNPETINFPRSENSSNRHISSKSTGNSIDPIVLW 60

Query: 61  TSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYA 120
           TSSIAR+CRNGQLAEAAAE T MRLAGVEPNH+T ITL+SGCADFPS SLYFGSSLHGYA
Sbjct: 61  TSSIARYCRNGQLAEAAAEFTSMRLAGVEPNHVTLITLLSGCADFPSESLYFGSSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFA 180
           RK GLDT HVMVGT+++ MY+K  QLGL R+VFDYL MKNSV+WNTMLDGY RNGE+E A
Sbjct: 121 RKLGLDTAHVMVGTSIVDMYAKCAQLGLARRVFDYLRMKNSVSWNTMLDGYTRNGEIELA 180

Query: 181 LNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADL 240
           ++LFDEMPTRDAISWTALINGLLKQGYSEQALECFH MQCSG++PDYVS+IAVLAACADL
Sbjct: 181 IDLFDEMPTRDAISWTALINGLLKQGYSEQALECFHQMQCSGIKPDYVSIIAVLAACADL 240

Query: 241 GTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSII 300
           GTLTLGLWVNRFVMQQEFK NIR++NSLIDMYSRCGCIGFARQVFE+M  RTLVSWNSII
Sbjct: 241 GTLTLGLWVNRFVMQQEFKDNIRISNSLIDMYSRCGCIGFARQVFERMSKRTLVSWNSII 300

Query: 301 VGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRI 360
           VG+A N +A+ESLEFFDAMQ+EGFKPD VSYTGALTACSHAGLVNKGLELFDNMKR+HRI
Sbjct: 301 VGYAANGFADESLEFFDAMQKEGFKPDAVSYTGALTACSHAGLVNKGLELFDNMKRVHRI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMK 420
            PRIEHYGCIVDLYGRAGRLE+AL VIEKMP+KPNEVVLGSLLAACRTHGDVSLAERLMK
Sbjct: 361 IPRIEHYGCIVDLYGRAGRLEDALDVIEKMPMKPNEVVLGSLLAACRTHGDVSLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480
           HL KLDPGGDSNYVLLSNIYA+IGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV
Sbjct: 421 HLSKLDPGGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480

Query: 481 SGDKYHDDADNIYSMLGLLFHELEICGYVPEKD------ESSKD 509
           +GDKYH DAD+IYSML LL HEL+ICG VPE +      ESSKD
Sbjct: 481 AGDKYHADADSIYSMLQLLVHELKICGSVPETETFLNTKESSKD 524

BLAST of Sed0004444 vs. ExPASy TrEMBL
Match: A0A6J1FZR8 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449396 PE=4 SV=1)

HSP 1 Score: 855.5 bits (2209), Expect = 1.1e-244
Identity = 414/515 (80.39%), Postives = 460/515 (89.32%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFR-PDSNPTSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCR 60
           M+S+ AHTAIP +F+    + ++P+ + FPR  NSS      N I PIV+WTSSIAR+CR
Sbjct: 1   MSSVPAHTAIPFQFQLQQYSNSNPSNLNFPRYPNSS------NPIKPIVLWTSSIARYCR 60

Query: 61  NGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGH 120
           N QL EAAAE TRMRLAGVEPNHITFITL+SGCADFPS SL+FG+SLHGY RK GLDTGH
Sbjct: 61  NAQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYVRKLGLDTGH 120

Query: 121 VMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPT 180
           VMVGTALI MY+K  QLGL R VFDYL MKNSVTWNTMLDGYMRNGE+E A+ LFDEMPT
Sbjct: 121 VMVGTALIAMYAKCAQLGLARNVFDYLDMKNSVTWNTMLDGYMRNGEIELAIELFDEMPT 180

Query: 181 RDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWV 240
           RDAISWTALING LKQGYSEQAL+CFH MQCSG+EPDYVS+IAVLAACADLG L+ GLWV
Sbjct: 181 RDAISWTALINGFLKQGYSEQALDCFHEMQCSGIEPDYVSIIAVLAACADLGALSFGLWV 240

Query: 241 NRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYA 300
           NRF+MQQEFK NIR++NSLIDMYSRCGCI FARQVF+KMP RTLVSWNS+IVGFA N +A
Sbjct: 241 NRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMPKRTLVSWNSMIVGFATNGFA 300

Query: 301 EESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGC 360
           +ESLEFFDAMQ+EGFK DGVSYTGALTACSHAGLVNKGLELFDNMKR+HRITPRIEHYGC
Sbjct: 301 DESLEFFDAMQKEGFKADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRITPRIEHYGC 360

Query: 361 IVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLFKLDPGG 420
           IVDLY RAGRL+EAL+VIE MP+KPNEVVLGSLLAACRTHGDVSLAERL+K+LF+LDPGG
Sbjct: 361 IVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIKYLFELDPGG 420

Query: 421 DSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDA 480
           DS+YVLLSNIYA++G+WEGAN VRRTMKARGVQKKPGFSS+EIDGKVHEFV+GDKYH DA
Sbjct: 421 DSSYVLLSNIYAAVGRWEGANMVRRTMKARGVQKKPGFSSIEIDGKVHEFVAGDKYHADA 480

Query: 481 DNIYSMLGLLFHELEICGYVPEK------DESSKD 509
           DNIYSML +LFHEL+ICGYVPE       +ESSK+
Sbjct: 481 DNIYSMLEVLFHELKICGYVPETATFMNGNESSKE 509

BLAST of Sed0004444 vs. ExPASy TrEMBL
Match: A0A6J1HU31 (pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466586 PE=4 SV=1)

HSP 1 Score: 849.7 bits (2194), Expect = 6.1e-243
Identity = 415/522 (79.50%), Postives = 460/522 (88.12%), Query Frame = 0

Query: 1   MNSISAHTAIPTRFRPD--SNPTS------PTKIIFPRSANSSNHKFTANSIDPIVVWTS 60
           M+S+ +HT IP +F+    SNP S      P+ + FPR+ NSS      N I PIV+WTS
Sbjct: 1   MSSVPSHTGIPFQFQLQQYSNPPSPIPHSNPSNLSFPRTPNSS------NPIKPIVLWTS 60

Query: 61  SIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARK 120
           SIAR+CRN QLAEAAAE TRMRLAGVEPNHITFITL+SGCADFPS SL+FG+SLHGY RK
Sbjct: 61  SIARYCRNAQLAEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSHSLHFGASLHGYVRK 120

Query: 121 FGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALN 180
            GLDTGHVMVGTALI MY+K  QLGL R VFDYL MKNSVTWNTMLDGYMRNGE+E A+ 
Sbjct: 121 LGLDTGHVMVGTALIAMYAKCAQLGLARNVFDYLAMKNSVTWNTMLDGYMRNGEIELAIE 180

Query: 181 LFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGT 240
           LFDEMPTRDAISWTALING LKQGYSEQALECFH MQCSG+EPDYVS+IAVLAACADLG 
Sbjct: 181 LFDEMPTRDAISWTALINGFLKQGYSEQALECFHEMQCSGIEPDYVSIIAVLAACADLGA 240

Query: 241 LTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVG 300
           L+ GLWVNRF+MQQEFK NIR++NSLIDMYSRCGCI FARQVF+KM   TLVSWNS+IVG
Sbjct: 241 LSFGLWVNRFLMQQEFKDNIRISNSLIDMYSRCGCIEFARQVFDKMSKHTLVSWNSMIVG 300

Query: 301 FAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITP 360
           FA+N +A+ESLEFFDAMQ+EGF  DGVSYTGALTACSHAGLVNKGLELFDNMKR+HRITP
Sbjct: 301 FAINGFADESLEFFDAMQKEGFMADGVSYTGALTACSHAGLVNKGLELFDNMKRVHRITP 360

Query: 361 RIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHL 420
           RIEHYGCIVDLY RAGRL+EAL+VIE MP+KPNEVVLGSLLAACRTHGDVSLAERL+K+L
Sbjct: 361 RIEHYGCIVDLYSRAGRLDEALNVIETMPMKPNEVVLGSLLAACRTHGDVSLAERLIKYL 420

Query: 421 FKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSG 480
           F+LDPGGDS+YVLLSNIYA++G+WEGANKVRRTMKARGVQKKPGFSS+EIDGKVHEFV+G
Sbjct: 421 FELDPGGDSSYVLLSNIYAAVGRWEGANKVRRTMKARGVQKKPGFSSIEIDGKVHEFVAG 480

Query: 481 DKYHDDADNIYSMLGLLFHELEICGYVPEK------DESSKD 509
           DKYH DADNIYSML +LFHEL+I GYVPE       +ESSK+
Sbjct: 481 DKYHVDADNIYSMLEVLFHELKIYGYVPETATFMNGNESSKE 516

BLAST of Sed0004444 vs. ExPASy TrEMBL
Match: A0A0A0LYD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1)

HSP 1 Score: 835.9 bits (2158), Expect = 9.2e-239
Identity = 413/524 (78.82%), Postives = 457/524 (87.21%), Query Frame = 0

Query: 1   MNSISAHTAIPTR-----FRPDSNPTS-PTKIIFPRSANSSNH----KFTANSIDPIVVW 60
           M+SI +HTA P++     F P S P S PTK+ FPRS NS +     KF  NS+DPIV+W
Sbjct: 1   MSSIPSHTATPSQLQLPPFTPSSIPLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLW 60

Query: 61  TSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYA 120
           TSS+AR+CRNGQL+EAAAE TRMRLAGVEPNHITFITL+S CADFPS S +F SSLHGYA
Sbjct: 61  TSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYA 120

Query: 121 RKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFA 180
            K+GLDTGHVMVGTALI MYSK  QLG  RKVF  LG+KNSV+WNTML+G+MRNGE+E A
Sbjct: 121 CKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELA 180

Query: 181 LNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADL 240
           + LFDEMPTRDAISWTALINGLLK GYSEQALECFH MQ SGV  DYVS+IAVLAACADL
Sbjct: 181 IQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADL 240

Query: 241 GTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSII 300
           G LTLGLWV+RFVM QEFK NI+++NSLIDMYSRCGCI FARQVF KM  RTLVSWNSII
Sbjct: 241 GALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSII 300

Query: 301 VGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRI 360
           VGFAVN +A+ESLEFF AMQ+EGFKPDGVSYTGALTACSHAGLVNKGLELFDNMK +H+I
Sbjct: 301 VGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKI 360

Query: 361 TPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMK 420
           TPRIEHYGCIVDLYGRAGRLE+AL++IE+MP+KPNEVVLGSLLAACRTHGDV+LAERLMK
Sbjct: 361 TPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMK 420

Query: 421 HLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFV 480
           HLFKLDP GD+ YVLLSNIYA+IGKW+GAN VRRTMKARGVQKKPG+SSVEIDGKVHEFV
Sbjct: 421 HLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFV 480

Query: 481 SGDKYHDDADNIYSMLGLLFHELEICGYVPEKD------ESSKD 509
           +GD YH DADNIYSML LL HEL++CGYVP  D      ES+KD
Sbjct: 481 AGDNYHADADNIYSMLDLLCHELKVCGYVPGSDTILNTKESNKD 524

BLAST of Sed0004444 vs. ExPASy TrEMBL
Match: A0A5A7UJB6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G002000 PE=4 SV=1)

HSP 1 Score: 835.1 bits (2156), Expect = 1.6e-238
Identity = 415/522 (79.50%), Postives = 458/522 (87.74%), Query Frame = 0

Query: 1   MNSISAHTAIPTRF-RPDSNP---TSPTKIIFPRSANSSN----HKFTANSIDPIVVWTS 60
           M+SI +H A P++  +P S+    ++PTK+ FPRS  S +     KFTANS+ PIV WTS
Sbjct: 1   MSSIPSHIASPSQLQQPPSSSIPLSNPTKVNFPRSPKSPHCNIFSKFTANSVHPIVQWTS 60

Query: 61  SIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARK 120
           SIAR+C NGQL EAAAE TRMRLAGVEPNHITFITL+SGCADFPS S +F SSLHGYA K
Sbjct: 61  SIARYCGNGQLPEAAAEFTRMRLAGVEPNHITFITLLSGCADFPSES-FFASSLHGYACK 120

Query: 121 FGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALN 180
           FGLDTGHVMVGTALI MYSK  QLGL +KVFDYLG+KNSV+WNTML+G+MRNGE+E A+ 
Sbjct: 121 FGLDTGHVMVGTALIDMYSKCSQLGLAKKVFDYLGVKNSVSWNTMLNGFMRNGEIELAIQ 180

Query: 181 LFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSGVEPDYVSVIAVLAACADLGT 240
           LFDEMPTRDAISWTALINGLLK GYSEQALECFH MQ SGV  DYVS+IAVLAACADLG 
Sbjct: 181 LFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVVADYVSIIAVLAACADLGA 240

Query: 241 LTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVG 300
           LT GLWVNRFVMQQEFK N+R++NSLIDMYSRCGCI FARQVF KM  RTLVSWNSIIVG
Sbjct: 241 LTSGLWVNRFVMQQEFKDNVRISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVG 300

Query: 301 FAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITP 360
           FA N +A+ESLEFF AMQ+EGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKR+H+ITP
Sbjct: 301 FAFNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRVHKITP 360

Query: 361 RIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHL 420
            IEHYGCIVDLYGRAGRLE+A +VIE+MP+KPNEVVLGSLLAACRTHGDV LAERLMKH+
Sbjct: 361 GIEHYGCIVDLYGRAGRLEDASNVIEEMPMKPNEVVLGSLLAACRTHGDVRLAERLMKHI 420

Query: 421 FKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSG 480
           FKLD  GDSNYVLLSNIYA+IGKWEGANKVRRTMKARGVQKK G+SSVEIDGKVHEFV+G
Sbjct: 421 FKLDSVGDSNYVLLSNIYAAIGKWEGANKVRRTMKARGVQKKRGYSSVEIDGKVHEFVAG 480

Query: 481 DKYHDDADNIYSMLGLLFHELEICGYVPEKD------ESSKD 509
           DKYH DADNIYSML LLFHEL++CGYVP+ D      +S+KD
Sbjct: 481 DKYHADADNIYSMLDLLFHELKVCGYVPDTDIILNTKDSNKD 521

BLAST of Sed0004444 vs. TAIR 10
Match: AT1G05750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 589.7 bits (1519), Expect = 2.2e-168
Identity = 288/482 (59.75%), Postives = 357/482 (74.07%), Query Frame = 0

Query: 21  TSPTKIIFPRSANSSNHKFTANSIDPIVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEP 80
           TSP  I     AN    +   ++ +  V WTS I    RNG+LAEAA E + M LAGVEP
Sbjct: 10  TSPALITHKNHANPKIQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEP 69

Query: 81  NHITFITLISGCADFPSRSLYFGSSLHGYARKFGLDTGHVMVGTALIGMYSKFGQLGLGR 140
           NHITFI L+SGC DF S S   G  LHGYA K GLD  HVMVGTA+IGMYSK G+    R
Sbjct: 70  NHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKAR 129

Query: 141 KVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQ 200
            VFDY+  KNSVTWNTM+DGYMR+G+V+ A  +FD+MP RD ISWTA+ING +K+GY E+
Sbjct: 130 LVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEE 189

Query: 201 ALECFHLMQCSGVEPDYVSVIAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLID 260
           AL  F  MQ SGV+PDYV++IA L AC +LG L+ GLWV+R+V+ Q+FK N+RV+NSLID
Sbjct: 190 ALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLID 249

Query: 261 MYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGFAVNSYAEESLEFFDAMQREGFKPDGVS 320
           +Y RCGC+ FARQVF  M  RT+VSWNS+IVGFA N  A ESL +F  MQ +GFKPD V+
Sbjct: 250 LYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVT 309

Query: 321 YTGALTACSHAGLVNKGLELFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKM 380
           +TGALTACSH GLV +GL  F  MK  +RI+PRIEHYGC+VDLY RAGRLE+AL +++ M
Sbjct: 310 FTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369

Query: 381 PLKPNEVVLGSLLAACRTHG-DVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGA 440
           P+KPNEVV+GSLLAAC  HG ++ LAERLMKHL  L+    SNYV+LSN+YA+ GKWEGA
Sbjct: 370 PMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGA 429

Query: 441 NKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYV 500
           +K+RR MK  G++K+PGFSS+EID  +H F++GD  H +   I  +L L+  +L + G V
Sbjct: 430 SKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCV 489

Query: 501 PE 502
            E
Sbjct: 490 VE 491

BLAST of Sed0004444 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). )

HSP 1 Score: 369.0 bits (946), Expect = 6.1e-102
Identity = 181/448 (40.40%), Postives = 276/448 (61.61%), Query Frame = 0

Query: 55  ARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFG 114
           + + R G   EA      M  +GV P+ I+ ++ IS C+    R++ +G S HGY  + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHGYVLRNG 369

Query: 115 LDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLF 174
            ++    +  ALI MY K  +     ++FD +  K  VTWN+++ GY+ NGEV+ A   F
Sbjct: 370 FESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 429

Query: 175 DEMPTRDAISWTALINGLLKQGYSEQALECFHLMQC-SGVEPDYVSVIAVLAACADLGTL 234
           + MP ++ +SW  +I+GL++    E+A+E F  MQ   GV  D V+++++ +AC  LG L
Sbjct: 430 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 489

Query: 235 TLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGF 294
            L  W+  ++ +   + ++R+  +L+DM+SRCG    A  +F  + NR + +W + I   
Sbjct: 490 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 549

Query: 295 AVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPR 354
           A+   AE ++E FD M  +G KPDGV++ GALTACSH GLV +G E+F +M ++H ++P 
Sbjct: 550 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 609

Query: 355 IEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLF 414
             HYGC+VDL GRAG LEEA+ +IE MP++PN+V+  SLLAACR  G+V +A    + + 
Sbjct: 610 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 669

Query: 415 KLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGD 474
            L P    +YVLLSN+YAS G+W    KVR +MK +G++K PG SS++I GK HEF SGD
Sbjct: 670 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 729

Query: 475 KYHDDADNIYSMLGLLFHELEICGYVPE 502
           + H +  NI +ML  +       G+VP+
Sbjct: 730 ESHPEMPNIEAMLDEVSQRASHLGHVPD 754

BLAST of Sed0004444 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). )

HSP 1 Score: 369.0 bits (946), Expect = 6.1e-102
Identity = 181/448 (40.40%), Postives = 276/448 (61.61%), Query Frame = 0

Query: 55  ARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLYFGSSLHGYARKFG 114
           + + R G   EA      M  +GV P+ I+ ++ IS C+    R++ +G S HGY  + G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL--RNILWGKSCHGYVLRNG 369

Query: 115 LDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGYMRNGEVEFALNLF 174
            ++    +  ALI MY K  +     ++FD +  K  VTWN+++ GY+ NGEV+ A   F
Sbjct: 370 FESWD-NICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 429

Query: 175 DEMPTRDAISWTALINGLLKQGYSEQALECFHLMQC-SGVEPDYVSVIAVLAACADLGTL 234
           + MP ++ +SW  +I+GL++    E+A+E F  MQ   GV  D V+++++ +AC  LG L
Sbjct: 430 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 489

Query: 235 TLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPNRTLVSWNSIIVGF 294
            L  W+  ++ +   + ++R+  +L+DM+SRCG    A  +F  + NR + +W + I   
Sbjct: 490 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 549

Query: 295 AVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKRMHRITPR 354
           A+   AE ++E FD M  +G KPDGV++ GALTACSH GLV +G E+F +M ++H ++P 
Sbjct: 550 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 609

Query: 355 IEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTHGDVSLAERLMKHLF 414
             HYGC+VDL GRAG LEEA+ +IE MP++PN+V+  SLLAACR  G+V +A    + + 
Sbjct: 610 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQ 669

Query: 415 KLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSSVEIDGKVHEFVSGD 474
            L P    +YVLLSN+YAS G+W    KVR +MK +G++K PG SS++I GK HEF SGD
Sbjct: 670 VLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 729

Query: 475 KYHDDADNIYSMLGLLFHELEICGYVPE 502
           + H +  NI +ML  +       G+VP+
Sbjct: 730 ESHPEMPNIEAMLDEVSQRASHLGHVPD 754

BLAST of Sed0004444 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 354.4 bits (908), Expect = 1.6e-97
Identity = 171/471 (36.31%), Postives = 285/471 (60.51%), Query Frame = 0

Query: 33  NSSNHKFTANSIDPIVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGC 92
           N + + F   S   +V W + I R+CR G + EA      M+ + V P+ +    ++S C
Sbjct: 163 NYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSAC 222

Query: 93  ADFPSRSLYFGSSLHGY--ARKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKN 152
               + ++ +  +++ +       +DT H++  TAL+ MY+  G + + R+ F  + ++N
Sbjct: 223 G--RTGNMRYNRAIYEFLIENDVRMDT-HLL--TALVTMYAGAGCMDMAREFFRKMSVRN 282

Query: 153 SVTWNTMLDGYMRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQC 212
                 M+ GY + G ++ A  +FD+   +D + WT +I+  ++  Y ++AL  F  M C
Sbjct: 283 LFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCC 342

Query: 213 SGVEPDYVSVIAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGF 272
           SG++PD VS+ +V++ACA+LG L    WV+  +     +  + +NN+LI+MY++CG +  
Sbjct: 343 SGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDA 402

Query: 273 ARQVFEKMPNRTLVSWNSIIVGFAVNSYAEESLEFFDAMQREGFKPDGVSYTGALTACSH 332
            R VFEKMP R +VSW+S+I   +++  A ++L  F  M++E  +P+ V++ G L  CSH
Sbjct: 403 TRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSH 462

Query: 333 AGLVNKGLELFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLG 392
           +GLV +G ++F +M   + ITP++EHYGC+VDL+GRA  L EAL VIE MP+  N V+ G
Sbjct: 463 SGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWG 522

Query: 393 SLLAACRTHGDVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARG 452
           SL++ACR HG++ L +   K + +L+P  D   VL+SNIYA   +WE    +RR M+ + 
Sbjct: 523 SLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKN 582

Query: 453 VQKKPGFSSVEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYVPE 502
           V K+ G S ++ +GK HEF+ GDK H  ++ IY+ L  +  +L++ GYVP+
Sbjct: 583 VFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPD 628

BLAST of Sed0004444 vs. TAIR 10
Match: AT4G37380.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 349.7 bits (896), Expect = 3.8e-96
Identity = 176/469 (37.53%), Postives = 280/469 (59.70%), Query Frame = 0

Query: 43  SIDP-IVVWTSSIARHCRNGQLAEAAAELTRMRLAGVEPNHITFITLISGCADFPSRSLY 102
           +IDP + ++T++I     NG   +A     ++  + + PN  TF +L+  C      S  
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSC------STK 149

Query: 103 FGSSLHGYARKFGLDTGHVMVGTALIGMYSKFGQLGLGRKVFDYLGMKNSVTWNTMLDGY 162
            G  +H +  KFGL      V T L+ +Y+K G +   +KVFD +  ++ V+   M+  Y
Sbjct: 150 SGKLIHTHVLKFGLGI-DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCY 209

Query: 163 MRNGEVEFALNLFDEMPTRDAISWTALINGLLKQGYSEQALECFHLMQCSG-VEPDYVSV 222
            + G VE A  LFD M  RD +SW  +I+G  + G+   AL  F  +   G  +PD ++V
Sbjct: 210 AKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITV 269

Query: 223 IAVLAACADLGTLTLGLWVNRFVMQQEFKGNIRVNNSLIDMYSRCGCIGFARQVFEKMPN 282
           +A L+AC+ +G L  G W++ FV     + N++V   LIDMYS+CG +  A  VF   P 
Sbjct: 270 VAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPR 329

Query: 283 RTLVSWNSIIVGFAVNSYAEESLEFFDAMQR-EGFKPDGVSYTGALTACSHAGLVNKGLE 342
           + +V+WN++I G+A++ Y++++L  F+ MQ   G +P  +++ G L AC+HAGLVN+G+ 
Sbjct: 330 KDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIR 389

Query: 343 LFDNMKRMHRITPRIEHYGCIVDLYGRAGRLEEALSVIEKMPLKPNEVVLGSLLAACRTH 402
           +F++M + + I P+IEHYGC+V L GRAG+L+ A   I+ M +  + V+  S+L +C+ H
Sbjct: 390 IFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLH 449

Query: 403 GDVSLAERLMKHLFKLDPGGDSNYVLLSNIYASIGKWEGANKVRRTMKARGVQKKPGFSS 462
           GD  L + + ++L  L+      YVLLSNIYAS+G +EG  KVR  MK +G+ K+PG S+
Sbjct: 450 GDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGIST 509

Query: 463 VEIDGKVHEFVSGDKYHDDADNIYSMLGLLFHELEICGYVPEKDESSKD 509
           +EI+ KVHEF +GD+ H  +  IY+ML  +   ++  GYVP  +   +D
Sbjct: 510 IEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQD 551

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877228.18.2e-25081.49pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Benincasa ... [more]
XP_022142716.14.1e-24981.68pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Momordica ... [more]
XP_023521260.11.6e-24580.58pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita ... [more]
KAG7012718.16.1e-24580.39Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_022945035.12.3e-24480.39pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Cucurbita ... [more]
Match NameE-valueIdentityDescription
Q9MA503.1e-16759.75Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop... [more]
Q9LUJ28.6e-10140.40Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX... [more]
O233372.2e-9636.31Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... [more]
Q9SZT85.4e-9537.53Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t... [more]
O823807.0e-9536.21Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1CN072.0e-24981.68pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Momordic... [more]
A0A6J1FZR81.1e-24480.39pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbit... [more]
A0A6J1HU316.1e-24379.50pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Cucurbit... [more]
A0A0A0LYD69.2e-23978.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169950 PE=4 SV=1[more]
A0A5A7UJB61.6e-23879.50Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT1G05750.12.2e-16859.75Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G22690.16.1e-10240.40CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012... [more]
AT3G22690.26.1e-10240.40INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic pro... [more]
AT4G14820.11.6e-9736.31Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G37380.13.8e-9637.53Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 241..345
e-value: 7.1E-23
score: 83.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 346..415
e-value: 1.2E-7
score: 33.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 37..98
e-value: 1.1E-7
score: 33.4
coord: 112..236
e-value: 1.7E-28
score: 101.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 161..441
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 356..381
e-value: 4.3E-4
score: 20.3
coord: 256..280
e-value: 0.0032
score: 17.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 183..216
e-value: 1.3E-8
score: 32.4
coord: 357..380
e-value: 4.6E-4
score: 18.2
coord: 319..347
e-value: 0.0017
score: 16.4
coord: 284..317
e-value: 1.6E-5
score: 22.7
coord: 152..180
e-value: 7.5E-8
score: 30.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 283..329
e-value: 2.4E-7
score: 30.9
coord: 181..228
e-value: 2.8E-9
score: 37.0
coord: 149..180
e-value: 7.0E-9
score: 35.8
coord: 47..93
e-value: 2.9E-7
score: 30.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 150..184
score: 11.619036
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..316
score: 10.829822
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..80
score: 8.79102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availablePANTHERPTHR47926:SF65BNAANNG25350D PROTEINcoord: 5..503
NoneNo IPR availablePANTHERPTHR47926PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 5..503

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004444.1Sed0004444.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding