Sed0004405 (gene) Chayote v1

Overview
NameSed0004405
Typegene
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan protein 23
LocationLG03: 16754923 .. 16755111 (+)
RNA-Seq ExpressionSed0004405
SyntenySed0004405
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAGCGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAGCGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAAGTTGGCCATTGCTTCCTTCATTGTTGTTTCAGCCTCTCTGAACATGGTTTTGGCCTCCAACGAAGTGTCAGCGCCCGCACCCGGTCCGTCAAGCAGCGCCTCCGCTACCTTGCCCGGCATTGGAGCATTTGTAGGTGCAGCTGCTACCACTCTCATTACCTACTGCCTTCAGTAA

Protein sequence

MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ
Homology
BLAST of Sed0004405 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          MEMK  A A+FI V ASL+MVLAS+E ++PAPGPSS  SATLP +G  +GA+A +LI YC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

BLAST of Sed0004405 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 37/56 (66.07%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 7  AIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYCLQ 63
          A A+FI V+ASL+MVLAS+E ++PAPGPSS+ASATLP +G  +GA+A +LI YCLQ
Sbjct: 3  ACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

BLAST of Sed0004405 vs. NCBI nr
Match: PON91671.1 (hypothetical protein TorRG33x02_125020 [Trema orientale])

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          ME+KK++IA  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y 
Sbjct: 40 MELKKISIA-VIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0004405 vs. NCBI nr
Match: PON58107.1 (hypothetical protein PanWU01x14_168770 [Parasponia andersonii])

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-05
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          ME+KK++ A  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y 
Sbjct: 40 MELKKISTA-VIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0004405 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200 [Populus trichocarpa])

HSP 1 Score: 55.1 bits (131), Expect = 2.5e-04
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          ME+KK++ A  +VV+AS++  LA++E+SAPAP P+S ASATLP +G+ +GA+  +   Y 
Sbjct: 1  MELKKISCA-VLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 61

BLAST of Sed0004405 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 9.7e-07
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          MEMKK+A    +  +AS+  V+A+ EV APAPGP+S+ASA LP +G+ VGA+  +L +Y 
Sbjct: 1  MEMKKIA-CGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-10
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          MEMK  A A+FI V ASL+MVLAS+E ++PAPGPSS  SATLP +G  +GA+A +LI YC
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A2P5F1L3 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.5e-06
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          ME+KK++IA  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y 
Sbjct: 40 MELKKISIA-VIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A2P5CAP7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 35/61 (57.38%), Postives = 46/61 (75.41%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          ME+KK++ A  IV +ASL+ V+A+NEV APAPGPSS ASATLP +G+ VGA+  +   Y 
Sbjct: 40 MELKKISTA-VIVAAASLSSVMAANEVLAPAPGPSSGASATLPVVGSLVGASLVSFFAYY 99

Query: 61 L 62
          L
Sbjct: 100 L 99

BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          ME+KK++ A  +VV+AS++  LA++E+SAPAP P+S ASATLP +G+ +GA+  +   Y 
Sbjct: 1  MELKKISCA-VLVVAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 61

BLAST of Sed0004405 vs. ExPASy TrEMBL
Match: A0A200QP69 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-04
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          M+MKK++ A  I V+AS+N  LA++E  APAPGP+S+A  T+P IG+ VGA+  +   + 
Sbjct: 1  MDMKKISCAVLIAVAASMNAALAADEAHAPAPGPASNAMTTMPVIGSLVGASLVSFFAFY 60

Query: 61 LQ 63
          +Q
Sbjct: 61 MQ 62

BLAST of Sed0004405 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 53.5 bits (127), Expect = 6.9e-08
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 1  MEMKKLAIASFIVVSASLNMVLASNEVSAPAPGPSSSASATLPGIGAFVGAAATTLITYC 60
          MEMKK+A    +  +AS+  V+A+ EV APAPGP+S+ASA LP +G+ VGA+  +L +Y 
Sbjct: 1  MEMKKIA-CGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035760.11.2e-0964.52arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga... [more]
KAE8649766.12.2e-0866.07hypothetical protein Csa_011936, partial [Cucumis sativus][more]
PON91671.11.4e-0559.02hypothetical protein TorRG33x02_125020 [Trema orientale][more]
PON58107.15.1e-0557.38hypothetical protein PanWU01x14_168770 [Parasponia andersonii][more]
PNT29922.12.5e-0450.00hypothetical protein POPTR_006G056200 [Populus trichocarpa][more]
Match NameE-valueIdentityDescription
Q8S2W49.7e-0750.82Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5D3E2715.7e-1064.52Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A2P5F1L36.5e-0659.02Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_125020 PE=4 SV... [more]
A0A2P5CAP72.5e-0557.38Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_168770 PE... [more]
A0A2K1ZXB01.2e-0450.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 ... [more]
A0A200QP692.1e-0446.77Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1779g40 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G57690.16.9e-0850.82arabinogalactan protein 23 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 1..62
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004405.1Sed0004405.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane