Sed0004262 (gene) Chayote v1

Overview
NameSed0004262
Typegene
OrganismSechium edule (Chayote v1)
DescriptionNucleolar protein 10
LocationLG05: 772862 .. 783910 (-)
RNA-Seq ExpressionSed0004262
SyntenySed0004262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCTTCAGTTTTACATAAACGACAATGGCGACAAAGTTTACACCACAAAGGTTTGTCTTCCTTCTCCATCTTTTCCTATTTCGTTTGATTTATAATTTTTGAATCCTATGTGCATAAACTGCGTCCGTTATGGTATTCAATTGAGAAATAAATAACGTAAAATTTCGTTCCAACTATGGATTGCTGGTCTTATTGCGTCACAAACAAGCAGTGATTGTATGACTCCGTGATTTTTGAAGATAAGGATGGATTGCTGACCATGAGTTCGAAAATTGGAACCTTGGATTAGTTATTGTGATGGCCTACCGCCAGTATGATACACCCCCGGTGAAGTACGTTTATTCTCGACGCAAGAAGTAGTAGCACGTGTGTGTGGGTGGTCACGTGTGGGTGTCTTTTGAATGTTAATTAGGTATAAATAATAGGCGGGAAAGGGTTTGGTAGTATCTTAGTTCATTGTAATAGGATTCTCTTTGAGATTTGAGAGTGAGGAGCTCTTGAACTCCTTGCGTTCTTGACAATTTGATAATAAAATTGGTAGAATCTACCACAGTATTCTCAAAGCGCAAGGCAACACGAATCTCCTTGATCGCCTCAAAGTAAGAGGTGATAAAAAAGCGAGGTGATGTGAGACTCAACAAATAAATGTATAGTTTTTTTTTTGAGAAAAATAAATGCAAAACTAAATAATATATTTATTTGAAACAAGGGTAAGCACGCCCGTCTATAGGCCAGGCACCGAGAGACATAGAAGGAGTAATGTCACATGTGAGTTTCGAACTTAGGTCTTTGAAAGGAGCATACCTTCAAAACCCAAGTCTTCAACCAATGTGCCACCCCTTGGGAACTGCATAACTAAATAATATATTGAGCATAAATTGATAAATAAAACATATTTCTATTCTCATAATTTCAAATTCATACATAAATCATACAAATTATATTATCATAAGATATACCATGCACATTAAATTATTATTTGTAGAAAAAAAAAAGTTAACCAAAAATATATATAAAAGAAAAGATCCTTAAAGTTAATAATTTAACAAATTCAGTATCCTTAATAAAGGCTTCATATGATTGCTAGATTTCTTCCTAAACTAAATTTAGATTATTTGTAGATATTAGGTTAGCATATAGATAAATAAATAAAACTTTGACAAGGCGCACCTTTTGGCTTGAGGAAAAAGCGATGCAGGGTGGAAAATGGCGAGGTAAAGTCCGGGTCTGATTGAAGGAGCTTGCCTTGGCTTTTTTAGAGGTGCAATACCCACCTATGTGCAAAGTAATGACCATAAGCAAGGAAAGACGATGGCCTCGAAAATGTTGCTCGCAACATTCCTCTCTTGAGATTAAACTAGGCTGCCATCATTCAGTGCTAGTAGTTTCTGCAGTTTGTATTGACATTTTATGCCCATTAAACGATAAACGATTTTGATCAAATATATGGTGGCATGTGCTTTTTTGCTTAGAATGTCCCGAATTTTTGCCGAGTTTGCACTATTCGAGCTTTGTTCTGATACGATCCGACCTTGGCATTTTAGGAATATTAGTATTTATTAATTATTAGTTAATTGCTATTTTAAATGTATTGGGCTTGGGCCTATTATTAGCTTTTTATTAGTTAGGTCAAATTAGGGTTTAGGGTTATAAATAGGAGTTGTTAGGTCATTGTCAATCATCCAATTGAATTGTCGTCTATGTACTCTTGCTCTTTGAGAGATTCTCTCGAGAGATTTATCGTAGTTTAATATAAAATTGTGGTAGATTCTATCATTTTGGTATTAGAGCCATTTGTCGATTCGGGAATGGTCTCGACTAGGATGGAAACAAGGATTCAAGAATGCGAAGAAAAATCAGCCGATTTGTTGAATAAGCAACGGGAATTGGAAGCGAAGATGGAATCGATGGAGGAACGGCTAGGGAAATTAATCGAATCGAAATTAAAGCAGCAGGATTCGAAATTTGAAGCAAAACTCTAGCAGTTAAACCGCACTTTGCTGATGTGGATGGAGTCGAACAAAATCGACAAAGGAAAGGGGTTGTTGATCGAGGCTACAAGGGAAGGTTTGGCGGCGGAAGCGAGCGGAGGCGTTGGTGCAACGACAGTAGGTTCGGCGAAAGGCGTAAAAGGAGCGAATGTAGTGGCGAAGGTGTTGGGGCGCGAAGTTATGGTCGGGGATGGCGCGGATGCTGAGCGTGGGGGCGCGAACTCGAGCAGCGGAGACGTCATTATCGGAAGGATCGCAGGCGCAGAGTTTGGCGGAGGCGACACGGGCGTCGCGAGAGCAGGGTTTCGTGGAAGTGCCGACATTGGCAGCACGGGTGCGAGGTTTGGCAGAGGCGACTCGGGCGTCGCAGGAGCGGGGTTTCGCGGAAGCGATGACATGGGCAGTGCGGGCACGGGCGCGAGATTCTGCGGAAGCGACACGGGCTTCGCGGGGGCGGAGCGAATGCGGTGCGTGGAGGTGGGACTGGCAGCGGTGGCTGGTGCGGCACGGGCACGAGGGTGAGTCGGACGGTCTCAACTGAACTGGGTCGATTCGGGATGGACCGGGTAGACCGTTGGACCGCCATTTGAGGTAGGAATTAAGGGAGACCCTAGATTTGACGATTGGAACGGTCGAAGCCGAAATTGGGGTGACGAATTACCAGGACCGGAGTTCGATCGACGGAGAGACCTTAGGGTTGATAGGAGGGGAAACGGCGTTCTGGGGAGAGGAGGGTGCGCATTGGCTATGACAGGCCGTTGGCGCATGACGGTTGGAACGATTGTGGTTGGAGTGACAATGTCCGAAATAGGGGACGAGATTTCGGGTGGGGAGGAGAAGAAAGATTTGAACGGGGAGGTTAGAGAGCAGGAGGAAGGGAGGGAGGGACCTGGTTGTGATAGGAGATTTAGAAAATTGGAGATGTCGATTTTCAAGGGTCTTGTTGATGAGGATTCGGTAGGATGGTTGAGTCGGGTCGAGCGTTATTTGCTGGTAAACAAGTTGACTGAATATGAAGGGGTTGAGGCAGCAGGGTTATGTTTAGAAGGGGAGGCATTGGAGTGGCTTTAGTATGAGGAGGACCGTGCTCCTTTTCGTTCCTGGAACGAATTCAAAGATGGGTTATTGGAGTGTTTCCAATCGGTGGCCCAGGCCAATAAGTATGCCAACTTCATGAGTTTGAAGCAAATAGGAACGGTGAAGGAATATCGCCGGAGCTTTGAGCTCTTTGCTAAGGGAATGCGCGATATTAGTATGAGTGCATTGGAGGGGAAATGGGAAAGTGGACTGAAAGAGGAGATACGGAGCGCGATGCGTAAACTACGACCAGTGGGCATTGAAGAGAAAATGTTTATGGCCCAAGTGATTGAGGATGATTTTGCTTTTCAGGGTGCCCAAAACGAGGGAAGTACTTCTGCAACAGTCAAGGCTAAAGCAGGAACAATTGTATCAGGAACTGGAAGCACAGAGATTTTGTCCCACATGACTACAATCGTTCACCCGACGTCTTGTAAAAAACTCACTGAAGCCGAAATTCGAGCTAGGAAGGACAAAGGGTTATGCTTTCGCTGCGATGAACAATTTGTCCCAGGACATTGTTGTCAGAAGAAGGAGCTCCAAAACTTGGATGTGTGGATCGTTCAGGATGCGCACGAGTGCCAGGATGCTGATGTGACAGAATTTTTGCCAGAAGACGGGGCTGTAAAAGATGGCATCAGAGATGGAACACCTTGAGGACAAGGTGGCTCTTGGGGGGGAAAGTATTGTTAGGATCCGGCCTTGGAATTTTAGGAATATTAGTATTTATTAATTATTAGTTAATTGCTATTTTAAATGTATTGGGCTTGGGCCTATTATTAGTCTTTTATTAATTAGGTCAAATTAGGGTTTAGGCAGTGATGTTGAGGCGACCCCAGGCGCTCGCCTATGGCGAGAGGCGACGCGACCTGGGGGTCTAGCGCCTGACTCGCAGCTGAGGCGAGGCCATTCAACCGAGCGCTCGCTTTGCTGCGCCATTTTGCGCCCGTCTGCGCCTCCGCCTTTGTCGAAGGCGAGCGCTTGATTGAAGGGGTCTCGTTTAGTTTAAAAAATCCAACGGGAAGAAAGACGAATAGTCGTTCGAAAAAAAGAAGGAAAGGATCGAGAGAATCTACCATTAAAGAGCTCAAAATATCTTTTCAAAAATAGAATGGAATGCAAATCGATCCAGCCTTTAAATAATATTCCTTTATTCATCAAATCTTAGAGCCTTCGTATTCTCATCTCCTTTGCTTCTCCTCTCAACTTCGTCTTCTAAGATTTGGCCATCTACGATTTGGAAGAATTGTGTAGGGTTTTCTCCATCTTCTGAAACTCCTTACTTTGAAGCAACAAGCAAGTAAGTGTTGTTTCTTCTCTGTTTCTTATTTTTTATGAAGAAATAAAGTAGAAACAGAGATATAATTATTTTCCTCCTTTTGCTCAGATTTTTGCGTCTCAAGGAAGTAGTTCACGTGTTTTCAAAATCAAATCAGCAGGGTACTTTTTTCACTTTTCAATTTATGATGTGTTTCATTTGTGGCCCTTAGATTGTTTAGATTTTTAGAATTGTTTAAAAAAAACTCAATGCACGTTTTTTATCTTTCAAATATAATATTGTTAAAATAATGTTTCTTTTTTAAAAATTTGTTATGGTACTTATTTGATTCTCATTACAATTTTAGTTTTTTTAATTTTTCATTTAATTCACGTTGCAATCTTGAGTTTGTGGTTTGGATTTCATTAGATTGTAATTGTTATATGTATTTAATATCCTATAATTAAAAATTGAATTAATAATATATCTTTTGATACAAATGTGCATTAAACTATTATTCTTTCCTAAATTGAATTAATATTTTGTATATTAAATAATAAATATTGAATTAATTTTAATTGTATAAATATTATTTTGTTTCTTTTTTAATTTCTAATTGCATTGTTAAATATTATTATTAAAAAAAAGTGGTTAGATTTCATTGGATTCTAGTAGACTTATTTAAGATATTGTTTTAAAAAGTTGTTATGATATTTATTTGATTCTGATTACAATTTAATTTTTTTATTTTGCATTTTGATTCTTTTCAAGTTTGTGGTTTGGATTTTATTAGATTGTCATTTTTATATTTAATATAGTGCAATTAAAAATTGAATTAAACTATAATTATTTTCTAAATTGAATTAATATTTTGTATATTAAATAATAAATATTGAATTAATTTTAATTGTATAAATATTATTTTGTTTCTTTTTTAATTTCTAATTGCATTGTTAAATATTAATATTAAAAAAAAAGTGGTTAGATTTCATTGGATTCTAGTAGACTTATTTAAGATATTGTTTTAAAAAGTTGTTATGATATTTATTTGATTCTGATTACAATTTAATTTTTTATTTATTTTGCATTTTGATTCTTTTCAAGTTTGTGGTTTGGATTTTATTAGATTGTCATTTTTATATTTAATATAGTGCAATTAAAAATTGAATTAAACTATAATTATTTTCTAAATTGAATTAATATTTTGTATATTAAATAATAAATATTGAATTAATTTTAATTGTATAAATAATATTTTGTTTCTTTTTTAATTTCTAATTGCATTGTTAAGTATTTTTTTAAAAAAAAATTGTTTGATATAAAAATGACTATAATAGGAATAGGATGGGAGAAGTTGGAACAAAAAGGAAACATCCTTGTTGGCAATACGTCATTTTAGAAGATGAGAAAGACACCAATGCTTGTACATGTACATTTTGTGGAAAAGTTACCAAGGGTGGGATTAGCCGAGCAACAACACATCTAGTTGGCGGAAATCGAAATGTTAAAGCTTGTTTAAAATGTCCATCGAATGTAAAAGAAGAATTGAAGGCATACCAAGAAAAAATCAAATCAAATCGAGAAGAAAGCAATGCACTTCCTAGTTATGTCGATTATGATTTAAACACAATCGACGAAGAGGATGCAATGGAAATTACTGGATCATGTTCAAGTTCAGGAATATCTAGAAAGCGAGCATTTGACAACAATGGGGCTACTAGAAGTCATTCTCAATTACAAGTGAAGTCGCCACGAAAAAAGGGTGCAATGGATAAGTTTGTTTATCCAAATCCTTCAAAGGTTATTGATGATAGGAATAGATCAAAGAATTTGAAGCAATCTATTATCACTGAAAAATATAATAAAGAGGGAAGAGATGCCACTGTTCAATTCATCATGCGTTGGATCTACCAAGCGGGTCTTCCATTAAATACCATTCGCTTAAGGAGCTTCCATGTAATGTTGGAAGCTATTGGTCAATTTGGTCCAGGTTTAAAACCTCCATCTTATCACGAGGCTAGAGTAACGTGCTTAAATAAGGAAGTCCAATTCACTAAAAATCTAATGGATAGCCATGAAGTTGAATGGAAAAGAAATGGATGTTCGTTGATGTCGGATGGATGGGTGATAGAAGAGATAGGACTTTAATTAACTTTTTAGTTCACTCTAGTGCTGGTACTATGTTTATGGAGTCTATTGATGCATCGCCGTGCATCAAAACTGGAGAAAAGTTATTTGAACTCTTGGATAAAATGGTCGAGAAAATTGGTGAGGAAAATGTAATTCAAGTGGTTACTGATAACGCCTCAAACTATGTCCTAGCTGGTAAGTTCTTGGAAGCAAAACGACCACATCTGTATTGGACACCGTGTGCAGCTCATTGTCTGGATTTGATCTTAGAAGACATTGGAAAAATTGAACAAATTAAGTGGCACTAAGTGGATTTATTTATAACCACTTGTACGTACTGAATATGATGAGAGAATTTACTAAACAACATGAGCTAGTTAGGGCCGGTACATTACTCGCTTTGCAACCTCATTTTGACACTAACAAGCATTCATAAGAATAAAGCCAATTTGAGGAACATGTTTCTTTCTGAGAAATGGACAACTAGTAAATGGGCAAAAGATCCCAAGGGCAAAAGAGCAGCTAACACCATTTTAATGCCTTCATTTTGGAACTCAGTAGTCTTTACTTTAAAGGCATCGAGACCTTTAGTTCGTGTTTTAAGACTTGTAGATGGTGACAAACCTGCAATGGGATATATTTATGAAGCCATGGATAGAGCAAAAGAGGCTATTAAAGATGGGTTCAATGGTAATGAAGTGAAATATAAGCCAATTTGGGATATTATTGATAAAAGATGGGATTGTCAGCTTCATCGACCATTGCATGCATCGGGATATTATTTGAATCCAGCTTTCTTCTATGACCATAAAGATGCAATTGTTCAAGATGTAGAAATCATGAGTGGATTACTTAAAGTCATTCGGCGTTTGATAGCATCCACTAGTGATCAAAATCGATGTACCATTGAATTGGAGTTGTATTCTGAAGCGAGAGGCATGTTCGGCATTGATTTAGCAATCAATACAAGGAAAGTAAAGACACCAGGTAATGCCATTATTATTATTATTATTTTTTACTTTGAATTTTCAAAATCTAAAACATTAACTTTGTAACCGTTTGTACCATGTGAAAAGCATCATGGTGGGCTCTTTATGGTGGTAGTACTCCAATTTTACAAAAGTTGGCTACGAGAGTGCTTAATCTAACATGCAGTGCTTCAGGATGTGAGCGTAATTGGAGTGTATTTGAACACGTAAGAAGTTCGTTAAGACGTTTTTTTCAATTATTAATTCAAGATTCAAAAGGTTGATTTTAAATTATACATTGTTTTTTTTAATTGTAGATTCATTCGAAGAAAAGGAATAGGCTAGATCAAAAGCGTTTAAATGACTTGGTTTTTGTTAAATACAATCAATCACTTAAGGAGCGTTTTGATCTAAAGGACCAACTTGATCCAATTACTTTGGATCATATTGATGATAGTAATGAATGGTTGGTTGGAACTCTTGAAGAAGAAAATGTCGAAGCAACAGTTGATGACGAGCTTGTTTTTTATGACGATGACTTGACATGGGGAGATGTAGCTCATGTCAGTGGAGTTAATGAACCCATAGTGTACACTAGATCGAGAGGAAAGACCCATGCAGCTGCTAATGCCTCGACTTCTAGACATCGGAGTAGTGTACTTCAGATTGTTAGTGATGATGACGAGGAAGATGAAGAAGAGTTCAATATTGAAGAGGAAAATCTTCAAAATGAAGCACTAGATGATAGCTTAGATTTAGATGGCGAGGAGGATGATATTTAAATATGAAATGAAACTTGAAAGTTCATTTTTTGTTCATCATTGAGGACTTCTTTTATACTTTTTTTCTTTTTAGTATTATTTTACTAGAATTTCAATTTTTATGAGAATAAGAATATGTTTTTATATTAAATTTATATTATATACATATAAAATATTTAATTATGTTTTTTATTCATTGCGCCTTGCTTCACTCGGGCCTCGCCTTTCTATCGCCTCTCGCCTTAAGGCGATCAAGGACATTGTCGCCTTGCGTTGCGCCTTGCGCTTTGAAAACACTGGGTTTAGGGTTATAGATAGGAGTTGTTAGGTCATTGTCAATCATCCAATTGAATTGTCGTCTATGTACTCTGGCTCTTTCAGAGATTCTCTCGAGAGATTTATCGTAGTTTAATATAAAATTGTGGTAGATTCTATCATGTTCCTAGAACTTTTAATCCTCCAATTTTTACTTCACTTTAACATGTCGGTAGATTAGAATTACCTTGCTCCCATCTTGACTTTAGACGCCATACTTTCTCCACGAGCATCGTTTCTTGTGTAGTGTGAGGCTGTGGATGACCTTTTTGAACACCCTTAGCAGCCTCTATTGATGCTCTCCTAAATGCTTTTCTTAAGCTTCATATAAACGTTCATGAGTGTCCTCATTTCTCCTAAAATTATTTGGATCAATACAGTGATGGAGATCTTGTGGAAGTTGGGATTGGAGGAGTCAAAGTCCCTTTGAAATTCGTTCGTCTTTGGAGTTTTTTGAGATATTTTAACACTTGTATAAATTCAAGTGGTTTATAAATGAATAATTTATTGTCCATAAATGGAACAAGTGTGTGATGCACTTTCATTTTCCTCAGATTATTATCAAGAATGATAAAACTCGAATCTCTTAACTAAAAAGGTATAGGCGTATAGCTATAACACAGTGCTGTAAGATTTAGTCCCTTGTTGGATTTCATGTCTCCTTCTTGGTTTCGTTCTATTAGTCTTTTCAAACTACCCTGTTGATCTTATTTGTATGATTGGAGCCTCTTTTTTGTTTGGTTCAGCTCTTTTTGGTGTGGGGTTTCTTTTCGCATGGTTCAACTTGGCGTGGGCTTTCTTTTCGTATGCCCTTTTACTTTTCATTTTTCTTCATTGAAAGGTCTAGGTTTCTCATTGAATGAAAAATGCAGTGCTATAAGATAACACAACATGACCTTTCCGTGAAATTTCTCTACAATGCCTTTTATAACTTTGTGATTTCCCATTTCAACTTCTTTGGATGGAACAGACCTGCTCTCGTGCTACATGCTTTCCCCCCTCATTGAGCATTTTAATTTTTCTCCATGACTCAACTAACATGTACAACTAGATCGCAATACCATTTTAGACTGCCAGTTTTGTTGCCGATACACCATAGATTAGTGGGTATAACAATTTTTTAATCTTATCAGTATCAACTAAATTTTAATAGTTTATGTCCCCAAGGAGTGGCGCAGTGGTTAAAGATTTAGGCTTTGAAGGTATGCTCCCTTCAAGGTCTCAGGTTTTAGACTCACCTGTGACATTACTCCTTCGATGTCTCCGATGCCTGGCCTAGGAACGGGCATGATTACCTCGTTTCAAAAAAAAAAAAAACTAAATTCTAATAGTTTATGTTAAGTTTTTTTTTTTCAGTTGGTAGACCTTTTCTTGTCATCTTTGGTAGGAATGAGCATTTAAAGTGCAAACCATTGTGCCAATAAATATTAATTCTATCAAGTATCAACTACCTTGAAAAAGAATTTCTAATTGTCCTGTACTGTTTGTACTTTGTTTTTATCCTGTTATATTAGGTATGCTAAATTGTCTACTTTGCATTTTTCTTCTCTTATACAGAAAGAATCGCCTCTTGGTTTGGTCACACAATCTGCTCATCCAGGTAAAATTCTTTGCATTATCTGGCTATTATTGTTGTGCTCTCTCGTTTCACCATCTTGCATACTTAGCAATATCAATGCTTTTGATACGGATAAAGGCCATGCTATAATATCTCTGTATTCTCATGTCTTGCTATATGGGATTGATTGAAACAATATACATGGTCTAAGTTGCATGTTTTTATTTGGGCGTTGGCGATGAAGTTGTTTTGTAGTTATTCAGTTGGTCTCATCTTTTTTGGATAGGAGCTCTTTCCTTTAACGAGACTCCCTTTTGGGGGCTTGTTTTTTTCAAGCCCTGGTATTATTTCATTTTTTTCTCAATCAAAGCTGGTTTCCTTTAACCAAAATGAAAGTATGCATGGTCTATTTCAGTTATAGTAGTGAGGATTGCAATTTTACATTCTTGAGAATGAATTTGTACCGTTGATATGCACCATGTGGGCATCATTTAACATTGGCTAACATGTAGAAAATGATATTGCCTCTTTTCTCCTTTAAGAGATAAGAGATAATACCATAATTTTTTCTCTATGTTTTATGGCTGGAATAGTTAAGACATTGTTTGCCGAGAATTATTTAGGTCATGCCTGGGATGACCTAAATATAAATGTCCGCTTATGGGTCTCATTCTATTTTTTTTTTTTTTTTTTTTTTATTTCTTTATATTTTGGATTTAAAATAAAATAGGACGTGATGCATATTGAGCCTCGTTGGTGGGCATTATTTTTTAGGTTATGTCCGGGTATGACCTAAATATTCTCTTATCTGCTAGGCAGGCCCTTCAATGTGATCATGATTTTATCATTTTCGAAACCTGATTACCTGGTGTCTATTTTCTGACTGCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCCTGCTACCCACCCAGCATCCAGCTCCAAAGTACTGA

mRNA sequence

ATGTATCTTCAGTTTTACATAAACGACAATGGCGACAAAGTTTACACCACAAAGAAAGAATCGCCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCCTGCTACCCACCCAGCATCCAGCTCCAAAGTACTGA

Coding sequence (CDS)

ATGTATCTTCAGTTTTACATAAACGACAATGGCGACAAAGTTTACACCACAAAGAAAGAATCGCCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCCTGCTACCCACCCAGCATCCAGCTCCAAAGTACTGA

Protein sequence

MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPAPKY
Homology
[Close]
BLAST of Sed0004262 vs. NCBI nr
Match: KAG6606368.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP
Sbjct: 26 MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 85

Query: 61 APKY 65
           PKY
Sbjct: 86 PPKY 89

[Close]
BLAST of Sed0004262 vs. NCBI nr
Match: XP_022931219.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022931220.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022996157.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_022996158.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_023534613.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo] >XP_023534614.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.6 bits (340), Expect = 1.5e-28
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Sed0004262 vs. NCBI nr
Match: XP_030543963.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea] >XP_030543964.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea])

HSP 1 Score: 133.3 bits (334), Expect = 7.6e-28
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Sed0004262 vs. NCBI nr
Match: PNX96303.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Trifolium pratense] >GAU21937.1 hypothetical protein TSUD_110770 [Trifolium subterraneum] >GAU43426.1 hypothetical protein TSUD_334890 [Trifolium subterraneum])

HSP 1 Score: 132.9 bits (333), Expect = 9.9e-28
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDK+SRQR+LLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRILLKKRFGLLPTQHP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]
BLAST of Sed0004262 vs. NCBI nr
Match: XP_020250406.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Asparagus officinalis])

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ P
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]
BLAST of Sed0004262 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-24
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ 
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 APKY 65
            +Y
Sbjct: 61 PLQY 64

[Close]
BLAST of Sed0004262 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-19
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          M+LQFY+N+NG++VYT KK  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQ P
Sbjct: 1  MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

Query: 61 AP 63
           P
Sbjct: 61 RP 62

[Close]
BLAST of Sed0004262 vs. ExPASy Swiss-Prot
Match: Q9V5P6 (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYL + IN+NGD+VYT KK +  G  T SAHPARFSP+DKYSRQR+ +KKRFGLL TQ P
Sbjct: 1  MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Query: 61 APKY 65
           P Y
Sbjct: 61 EPIY 64

[Close]
BLAST of Sed0004262 vs. ExPASy Swiss-Prot
Match: Q9NPE3 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQ P
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 AP 63
           P
Sbjct: 61 RP 62

[Close]
BLAST of Sed0004262 vs. ExPASy Swiss-Prot
Match: Q9CQS2 (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDKYSR R+ +KKRF +L TQ P
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 AP 63
           P
Sbjct: 61 RP 62

[Close]
BLAST of Sed0004262 vs. ExPASy TrEMBL
Match: A0A6J1KA21 (Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111491467 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Sed0004262 vs. ExPASy TrEMBL
Match: A0A6J1EYV1 (Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111437463 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-29
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Sed0004262 vs. ExPASy TrEMBL
Match: A0A2Z6MYL0 (Nucleolar protein 10 OS=Trifolium subterraneum OX=3900 GN=TSUD_110770 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-28
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDK+SRQR+LLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRILLKKRFGLLPTQHP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]
BLAST of Sed0004262 vs. ExPASy TrEMBL
Match: A0A2K3MZS9 (Nucleolar protein 10 OS=Trifolium pratense OX=57577 GN=L195_g019506 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-28
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDK+SRQR+LLKKRFGLLPTQHP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRILLKKRFGLLPTQHP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]
BLAST of Sed0004262 vs. ExPASy TrEMBL
Match: A0A1S3BHD2 (Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ P
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]
BLAST of Sed0004262 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-25
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ 
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 APKY 65
            +Y
Sbjct: 61 PLQY 64

[Close]
BLAST of Sed0004262 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-23
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0 

Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60
          MYLQ YIN+ G+KVYTT KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ 
Sbjct: 1  MYLQCYINEKGEKVYTT-KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 APKY 65
            +Y
Sbjct: 61 PLQY 63

The following BLAST results are available for this feature:
BLAST of Sed0004262 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6606368.11.5e-2898.44H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr... [more]
XP_022931219.11.5e-2898.44H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_... [more]
XP_030543963.17.6e-2896.88H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea] >XP_... [more]
PNX96303.19.9e-2893.75H/ACA ribonucleoprotein complex subunit 3-like protein [Trifolium pratense] >GAU... [more]
XP_020250406.11.3e-2796.88H/ACA ribonucleoprotein complex subunit 3-like protein [Asparagus officinalis][more]
BLAST of Sed0004262 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93XX82.4e-2481.25H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O... [more]
Q6DRH51.8e-1969.35H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S... [more]
Q9V5P63.3e-1867.19H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=... [more]
Q9NPE34.3e-1864.52H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ... [more]
Q9CQS24.3e-1864.52H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3... [more]
BLAST of Sed0004262 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KA217.4e-2998.44Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111491467 PE=3 SV=1[more]
A0A6J1EYV17.4e-2998.44Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111437463 PE=3 SV=1[more]
A0A2Z6MYL04.8e-2893.75Nucleolar protein 10 OS=Trifolium subterraneum OX=3900 GN=TSUD_110770 PE=3 SV=1[more]
A0A2K3MZS94.8e-2893.75Nucleolar protein 10 OS=Trifolium pratense OX=57577 GN=L195_g019506 PE=3 SV=1[more]
A0A1S3BHD21.8e-2795.31Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1[more]
BLAST of Sed0004262 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20490.11.7e-2581.25nucleolar RNA-binding Nop10p family protein [more]
AT2G20490.21.6e-2379.69nucleolar RNA-binding Nop10p family protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 3..52
e-value: 6.5E-19
score: 67.7
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 1..64
NoneNo IPR availableGENE3D2.20.28.40H/ACA ribonucleoprotein complex, subunit Nop10coord: 10..54
e-value: 2.1E-14
score: 55.2
NoneNo IPR availablePANTHERPTHR13305:SF2H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEINcoord: 1..64
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILY144210Nop10-like SnoRNPcoord: 3..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004262.1Sed0004262.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031118 rRNA pseudouridine synthesis
biological_process GO:0031120 snRNA pseudouridine synthesis
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0031429 box H/ACA snoRNP complex
cellular_component GO:0090661 box H/ACA telomerase RNP complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0034513 box H/ACA snoRNA binding
molecular_function GO:0070034 telomerase RNA binding
molecular_function GO:0030515 snoRNA binding