Sed0004259 (gene) Chayote v1

Overview
NameSed0004259
Typegene
OrganismSechium edule (Chayote v1)
DescriptionMorc6_S5 domain-containing protein
LocationLG01: 61632817 .. 61633782 (-)
RNA-Seq ExpressionSed0004259
SyntenySed0004259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTAGATGTTGGAGATTATGAGCGGAATTGTGTTCTTGATCCTATTTCGAGTTCAGGTAATTCAATTCCTCTATTTTCATTATCGATTACTTGGGTACGAAAAAACCAAAAATCCATTTATCCAACCAAAATGGTTAAGTTAATAATTTTCTTTAGATTGGATAGAGAGGTTGAGTCAACTTATAATTTTATAATTTTATTTGAGTTTCAGTTTGACTCAACTTTTGGCTCATTCAACCCATACAACCAAAACTAATAAATATAGATTTTTAGCCTATATGGAATATATACACATAACGGTAACCTAGATTTAAGTATAGTACAATTTTTATTTTACATATTTATCTGTTATGAGTTGAATCTTATAGAGGAAAAAGAAGATTAACATAACTCGAAATTCTTGCGTTGGGCTATATTGCTCTAATACATAGGATTAGACGGGTCAAGGGGTTGATCAACTAATAAATTTGGTTTCGTCCAAAAATATTTCTAATCCAACCTAACACAACTCATACTATAATAATGAGTTAGAACCTCACTTGTTTCTTCTGTTTTCTAAAATGAAAATTTCAACTTTTATAATTGAAATTTATGTAAATTTATGTCAATTGAATTCATGTCTGTTTAATTTTTCATCTAAATTCTGTTGTGGATCCTCTTATTTATGTAAATTCTTGCTTCAAATATTGATGATTAAATGTCTGTTTTATATTTTATAGTTGATATAGATCATGTGAGAGTTCATCTGAAATTTCTGCATTCAAATGCCACCAGCCATAAATGGGCTCTAGGAGGTAAATTATCACTTGAATGTGGATTATCCGTTTTCTTTTCCTTTGTTTTCCTCTCATTTCAAAGATTTATGTCAGTAGGTTCATAATAACTTGTTTCAGAGTCTTTCATCATTCACTATGGGCTAGTGAAAGATATTCCAAAATTGAGATGTGGGCTAACGAAATAA

mRNA sequence

ATGAGGTTAGATGTTGGAGATTATGAGCGGAATTGTGTTCTTGATCCTATTTCGAGTTCAGTTGATATAGATCATGTGAGAGTTCATCTGAAATTTCTGCATTCAAATGCCACCAGCCATAAATGGGCTCTAGGAGAGTCTTTCATCATTCACTATGGGCTAGTGAAAGATATTCCAAAATTGAGATGTGGGCTAACGAAATAA

Coding sequence (CDS)

ATGAGGTTAGATGTTGGAGATTATGAGCGGAATTGTGTTCTTGATCCTATTTCGAGTTCAGTTGATATAGATCATGTGAGAGTTCATCTGAAATTTCTGCATTCAAATGCCACCAGCCATAAATGGGCTCTAGGAGAGTCTTTCATCATTCACTATGGGCTAGTGAAAGATATTCCAAAATTGAGATGTGGGCTAACGAAATAA

Protein sequence

MRLDVGDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALGESFIIHYGLVKDIPKLRCGLTK
Homology
[Close]
BLAST of Sed0004259 vs. NCBI nr
Match: XP_008454488.1 (PREDICTED: protein MICRORCHIDIA 7-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 155 GDYEGNCNCDPISSSVGMDHVRVHPKFLHSNATSHKWALG 194

[Close]
BLAST of Sed0004259 vs. NCBI nr
Match: KAA0044501.1 (protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 155 GDYEGNCNCDPISSSVGMDHVRVHPKFLHSNATSHKWALG 194

[Close]
BLAST of Sed0004259 vs. NCBI nr
Match: TYK29629.1 (protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 155 GDYEGNCNCDPISSSVGMDHVRVHPKFLHSNATSHKWALG 194

[Close]
BLAST of Sed0004259 vs. NCBI nr
Match: XP_038889923.1 (protein MICRORCHIDIA 7-like [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-10
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPIS+SV +DHVRVH KFLHSNATSHKWALG
Sbjct: 146 GDYEGNCNRDPISNSVGMDHVRVHPKFLHSNATSHKWALG 185

[Close]
BLAST of Sed0004259 vs. NCBI nr
Match: XP_022145153.1 (protein MICRORCHIDIA 7-like [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-10
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE N  +DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 156 GDYEGNSDIDPISSSVGMDHVRVHPKFLHSNATSHKWALG 195

[Close]
BLAST of Sed0004259 vs. ExPASy Swiss-Prot
Match: F4KAF2 (Protein MICRORCHIDIA 4 OS=Arabidopsis thaliana OX=3702 GN=MORC4 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-07
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE     D   S+   DHVRVH KFLHSNATSHKW+LG
Sbjct: 133 GDYEGTSGGDWEVSAGGFDHVRVHPKFLHSNATSHKWSLG 172

[Close]
BLAST of Sed0004259 vs. ExPASy Swiss-Prot
Match: F4JRS4 (Protein MICRORCHIDIA 7 OS=Arabidopsis thaliana OX=3702 GN=MORC7 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-07
Identity = 27/40 (67.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE     +   SS   DHVRVH KFLHSNATSHKWALG
Sbjct: 142 GDYEGAAGDNWDLSSGGFDHVRVHPKFLHSNATSHKWALG 181

[Close]
BLAST of Sed0004259 vs. ExPASy Swiss-Prot
Match: Q84WV6 (Protein MICRORCHIDIA 1 OS=Arabidopsis thaliana OX=3702 GN=MORC1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0 

Query: 23  IDHVRVHLKFLHSNATSHKWALG 46
           ++H RVH KFLHSNATSHKWA G
Sbjct: 82  VEHARVHPKFLHSNATSHKWAFG 104

[Close]
BLAST of Sed0004259 vs. ExPASy Swiss-Prot
Match: Q5FV35 (Protein MICRORCHIDIA 2 OS=Arabidopsis thaliana OX=3702 GN=MORC2 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.9e-04
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 0 

Query: 23 IDHVRVHLKFLHSNATSHKWALG 46
          ++H RVH +FLHSNATSHKWA G
Sbjct: 74 LEHARVHPRFLHSNATSHKWAFG 96

[Close]
BLAST of Sed0004259 vs. ExPASy TrEMBL
Match: A0A5A7TSG1 (Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002400 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.3e-11
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 155 GDYEGNCNCDPISSSVGMDHVRVHPKFLHSNATSHKWALG 194

[Close]
BLAST of Sed0004259 vs. ExPASy TrEMBL
Match: A0A5D3E1L0 (Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G002410 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.3e-11
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 155 GDYEGNCNCDPISSSVGMDHVRVHPKFLHSNATSHKWALG 194

[Close]
BLAST of Sed0004259 vs. ExPASy TrEMBL
Match: A0A1S3BYQ8 (protein MICRORCHIDIA 7-like OS=Cucumis melo OX=3656 GN=LOC103494886 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.3e-11
Identity = 34/40 (85.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE NC  DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 155 GDYEGNCNCDPISSSVGMDHVRVHPKFLHSNATSHKWALG 194

[Close]
BLAST of Sed0004259 vs. ExPASy TrEMBL
Match: A0A6J1CV68 (protein MICRORCHIDIA 7-like OS=Momordica charantia OX=3673 GN=LOC111014666 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE N  +DPISSSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 156 GDYEGNSDIDPISSSVGMDHVRVHPKFLHSNATSHKWALG 195

[Close]
BLAST of Sed0004259 vs. ExPASy TrEMBL
Match: A0A6A6KCF0 (Morc6_S5 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_017048 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE   V D   SSV +DHVRVH KFLHSNATSHKWALG
Sbjct: 95  GDYEERSVSDYTYSSVGMDHVRVHPKFLHSNATSHKWALG 134

[Close]
BLAST of Sed0004259 vs. TAIR 10
Match: AT4G24970.1 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein )

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-08
Identity = 27/40 (67.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE     +   SS   DHVRVH KFLHSNATSHKWALG
Sbjct: 142 GDYEGAAGDNWDLSSGGFDHVRVHPKFLHSNATSHKWALG 181

[Close]
BLAST of Sed0004259 vs. TAIR 10
Match: AT5G50780.1 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein )

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-08
Identity = 26/40 (65.00%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 6   GDYERNCVLDPISSSVDIDHVRVHLKFLHSNATSHKWALG 46
           GDYE     D   S+   DHVRVH KFLHSNATSHKW+LG
Sbjct: 133 GDYEGTSGGDWEVSAGGFDHVRVHPKFLHSNATSHKWSLG 172

[Close]
BLAST of Sed0004259 vs. TAIR 10
Match: AT4G36290.1 (compromised recognition of TCV 1 )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0 

Query: 23  IDHVRVHLKFLHSNATSHKWALG 46
           ++H RVH KFLHSNATSHKWA G
Sbjct: 82  VEHARVHPKFLHSNATSHKWAFG 104

[Close]
BLAST of Sed0004259 vs. TAIR 10
Match: AT4G36280.1 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.5e-05
Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = 0 

Query: 23 IDHVRVHLKFLHSNATSHKWALG 46
          ++H RVH +FLHSNATSHKWA G
Sbjct: 74 LEHARVHPRFLHSNATSHKWAFG 96

[Close]
BLAST of Sed0004259 vs. TAIR 10
Match: AT5G13130.1 (Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.9e-04
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 0 

Query: 26  VRVHLKFLHSNATSHKWALG 46
           VRVH +FLH+NATSHKWALG
Sbjct: 100 VRVHPQFLHANATSHKWALG 119

The following BLAST results are available for this feature:
BLAST of Sed0004259 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454488.11.5e-1085.00PREDICTED: protein MICRORCHIDIA 7-like [Cucumis melo][more]
KAA0044501.11.5e-1085.00protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa][more]
TYK29629.11.5e-1085.00protein MICRORCHIDIA 7-like [Cucumis melo var. makuwa][more]
XP_038889923.14.4e-1082.50protein MICRORCHIDIA 7-like [Benincasa hispida][more]
XP_022145153.19.8e-1082.50protein MICRORCHIDIA 7-like [Momordica charantia][more]
BLAST of Sed0004259 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KAF28.0e-0765.00Protein MICRORCHIDIA 4 OS=Arabidopsis thaliana OX=3702 GN=MORC4 PE=1 SV=2[more]
F4JRS48.0e-0767.50Protein MICRORCHIDIA 7 OS=Arabidopsis thaliana OX=3702 GN=MORC7 PE=1 SV=1[more]
Q84WV61.7e-0478.26Protein MICRORCHIDIA 1 OS=Arabidopsis thaliana OX=3702 GN=MORC1 PE=1 SV=1[more]
Q5FV354.9e-0473.91Protein MICRORCHIDIA 2 OS=Arabidopsis thaliana OX=3702 GN=MORC2 PE=1 SV=1[more]
BLAST of Sed0004259 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TSG17.3e-1185.00Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3E1L07.3e-1185.00Protein MICRORCHIDIA 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A1S3BYQ87.3e-1185.00protein MICRORCHIDIA 7-like OS=Cucumis melo OX=3656 GN=LOC103494886 PE=3 SV=1[more]
A0A6J1CV684.7e-1082.50protein MICRORCHIDIA 7-like OS=Momordica charantia OX=3673 GN=LOC111014666 PE=3 ... [more]
A0A6A6KCF01.7e-0775.00Morc6_S5 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_017048... [more]
BLAST of Sed0004259 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24970.15.7e-0867.50Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [more]
AT5G50780.15.7e-0865.00Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [more]
AT4G36290.11.2e-0578.26compromised recognition of TCV 1 [more]
AT4G36280.13.5e-0573.91Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [more]
AT5G13130.12.9e-0485.00Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004259.1Sed0004259.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0031349 positive regulation of defense response
biological_process GO:0050778 positive regulation of immune response
biological_process GO:0002833 positive regulation of response to biotic stimulus
biological_process GO:0032103 positive regulation of response to external stimulus
molecular_function GO:0004519 endonuclease activity