Sed0004258 (gene) Chayote v1

Overview
NameSed0004258
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 546931 .. 547436 (-)
RNA-Seq ExpressionSed0004258
SyntenySed0004258
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAACAATCTCCATAAAAAAAAAACCCATCTTTTATTTTCCTCCAAAAATGAAGATCCAATTTGCTATGTTTTTAGCCATTGTGCTTGTGCTTGCCAACACTAATAAGCTCGAAGGTTGCAGAACCATGAAGGATGATCTTCAAAGCTGGTCGGCGGTGCTTCAACAGTCGCTGCAAAGAGCGCCGGTTCCGCCCTCCGCCAAAAACGGCGACTCGAACATTCCGGTACCGCTCGGACAACGGGCCTTCGCCGGAAAATTCACGGCGCCGCCGGCGTTCGCCTACCCGGATCGTCTCTCGCTCCCTTCTGGTGTGGCCTTCATCAAGACAATTAATTAATTAATTACACAAAATATACATATATGCATGGGATTTTCTTTTTTTATAATTTGTTTTATTTTTTTTCCTTTCTCAATTTCAGCAAATCATAATATGGCAAGTGGGATATAGGAGTCTTGAAATTTGTAATTCATTTATTTATATTTGGGAAATGACATTAATTCA

mRNA sequence

ATTCAACAATCTCCATAAAAAAAAAACCCATCTTTTATTTTCCTCCAAAAATGAAGATCCAATTTGCTATGTTTTTAGCCATTGTGCTTGTGCTTGCCAACACTAATAAGCTCGAAGGTTGCAGAACCATGAAGGATGATCTTCAAAGCTGGTCGGCGGTGCTTCAACAGTCGCTGCAAAGAGCGCCGGTTCCGCCCTCCGCCAAAAACGGCGACTCGAACATTCCGGTACCGCTCGGACAACGGGCCTTCGCCGGAAAATTCACGGCGCCGCCGGCGTTCGCCTACCCGGATCGTCTCTCGCTCCCTTCTGGTGTGGCCTTCATCAAGACAATTAATTAATTAATTACACAAAATATACATATATGCATGGGATTTTCTTTTTTTATAATTTGTTTTATTTTTTTTCCTTTCTCAATTTCAGCAAATCATAATATGGCAAGTGGGATATAGGAGTCTTGAAATTTGTAATTCATTTATTTATATTTGGGAAATGACATTAATTCA

Coding sequence (CDS)

ATGAAGATCCAATTTGCTATGTTTTTAGCCATTGTGCTTGTGCTTGCCAACACTAATAAGCTCGAAGGTTGCAGAACCATGAAGGATGATCTTCAAAGCTGGTCGGCGGTGCTTCAACAGTCGCTGCAAAGAGCGCCGGTTCCGCCCTCCGCCAAAAACGGCGACTCGAACATTCCGGTACCGCTCGGACAACGGGCCTTCGCCGGAAAATTCACGGCGCCGCCGGCGTTCGCCTACCCGGATCGTCTCTCGCTCCCTTCTGGTGTGGCCTTCATCAAGACAATTAATTAA

Protein sequence

MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWSAVLQQSLQRAPVPPSAKNGDSNIPVPLGQRAFAGKFTAPPAFAYPDRLSLPSGVAFIKTIN
Homology
BLAST of Sed0004258 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-27
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWSAVLQQSLQRAPVPPSAKNGDSNIPV 60
          MKIQFA  LAI LVLAN ++L+ CR MK D Q WS VLQQSLQRAPVPPS K+G + IPV
Sbjct: 1  MKIQFAFILAIFLVLANVHQLQSCRIMKVDQQKWSMVLQQSLQRAPVPPSGKDGGTTIPV 60

Query: 61 PLGQRAFAGKFTAPPAFAYPDRLSLPSGVA 91
          PLG+RAFAGKF APPA AYPD L +PSGVA
Sbjct: 61 PLGERAFAGKFMAPPADAYPDHLLIPSGVA 90

BLAST of Sed0004258 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 5.7e-27
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWSAVLQQSLQRAPVPPSAKNGDSNIPV 60
          MKIQF  F AI+++LAN + L+ CRTMKDD + WS ++QQSLQRAPVPPS ++GD+NIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PLGQRAFAGKFTAPPAFAYPDRLSLPSGVA 91
          PLGQ+AFAGK T PPAF  PD L +PSGVA
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVA 90

BLAST of Sed0004258 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 5.3e-25
Identity = 61/90 (67.78%), Postives = 72/90 (80.00%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWSAVLQQSLQRAPVPPSAKNGDSNIPV 60
          MKIQFA  LAIV++LAN ++L+ CRTMKDD Q WS +LQQSLQRAPVPPSAKNG + IPV
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSILLQQSLQRAPVPPSAKNGGTTIPV 60

Query: 61 PLGQRAFAGKFTAPPAFAYPDRLSLPSGVA 91
          PLGQRAF GK T  PA +Y  ++ +P GVA
Sbjct: 61 PLGQRAFVGKSTPSPAHSYHHQVPVPFGVA 90

BLAST of Sed0004258 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-23
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWS-AVLQQSLQRAPVPPSAKNGDSNIP 60
          MKIQFA  LAI++VLAN ++L+ CRTMK+D Q WS  +LQQSLQRAPVPP+AKNG + IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 VPLGQRAFAGKFTAPPAFAYPDRLSLPSGVAFIKT 95
           PLGQRAF GK T  PA +Y  ++ +P GVA +KT
Sbjct: 61 TPLGQRAFVGKSTPSPAHSYHHQVPVPLGVAAMKT 95

BLAST of Sed0004258 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 8.5e-23
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWS-AVLQQSLQRAPVPPSAKNGDSNIP 60
          MKIQFA  LAI++VLAN ++L+ CRTMK+D Q WS  +LQQSLQRAPVPPSAKNG + IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 VPLGQRAFAGKFTAPPAFAYPDRLSLPSGVA 91
          VPLGQR+F GK T  PA +Y  ++ +P GVA
Sbjct: 61 VPLGQRSFVGKSTPSPAHSYHHQVPVPFGVA 91

BLAST of Sed0004258 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWSAVLQQSLQRAPVPPSAKNGDSNIPV 60
          MKIQF  F AI+++LAN + L+ CRTMKDD + WS ++QQSLQRAPVPPS ++GD+NIPV
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSMLIQQSLQRAPVPPSTRDGDTNIPV 60

Query: 61 PLGQRAFAGKFTAPPAFAYPDRLSLPSGVA 91
          PLGQ+AFAGK T PPAF  PD L +PSGVA
Sbjct: 61 PLGQQAFAGKSTVPPAFPDPDNLEVPSGVA 90

BLAST of Sed0004258 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 55/82 (67.07%), Postives = 67/82 (81.71%), Query Frame = 0

Query: 1  MKIQFAMFLAIVLVLANTNKLEGCRTMKDDLQSWS---AVLQQSLQRAPVPPSAKNGDSN 60
          MKIQF+  LAI+++LANT+ L+ CRT+KDD Q+WS    +LQQSLQR PVPPSAKNGD+N
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGQRAFAGKFTAPPAFAY 80
          IPVP+GQRAFAGK +A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

BLAST of Sed0004258 vs. ExPASy TrEMBL
Match: A0A061DNY2 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004138 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.3e-04
Identity = 36/92 (39.13%), Postives = 50/92 (54.35%), Query Frame = 0

Query: 7  MFLAIVLVLANTNKLEGCRTMKDDLQSWSAVLQQSLQRAPVPPSAKNGDSNIPVPLG--- 66
          +F+  V  L +T+  E  R + +D+     ++ QSLQ+ PVPPS +NG +NIP   G   
Sbjct: 8  VFVTAVNFLLSTHPCEASRLLNEDV-----LVLQSLQKGPVPPSGRNGCTNIPGRGGPPC 67

Query: 67 --QRAFAGKFTAPPAFAYPDRLSLPSGVAFIK 94
             RAFAG   APP    PD +SL    A +K
Sbjct: 68 TSHRAFAGHIMAPPRL-QPDHMSLFRAAANLK 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571506.11.9e-2773.33hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0025373.15.7e-2767.78hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957... [more]
KAG6571505.15.3e-2567.78hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571504.12.9e-2363.16hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.18.5e-2364.84hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7772.7e-2767.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY52.5e-2067.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
A0A061DNY24.3e-0439.13Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_004138 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0004258.1Sed0004258.1mRNA