Sed0004219 (gene) Chayote v1

Overview


Name	Sed0004219
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	LG07: 39915745 .. 39920249 (-)
RNA-Seq Expression	Sed0004219
Synteny	Sed0004219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCAATTTCTTTATTCCCATAACCCACTCTGTTCTTCACACTCAATTCCTTTATATATATATATATATAATCTTTTTTTCTTCCATTTCTCACTTCTTCAATTTCTGCTGCTTTGATTTCGGAGGAAAACACAGAGTCGCCGGAATGTCGATGGCGAGCAACAACGGAGGTGTGTTTGGGGACACGACGTTGACCAAGGTCTTCGTCGGAGGCCTGGCGTGGGAGACTCCGAAGGAGGCCATGAGAGACCACTTCGAGAGGTTCGGCGAGATCCTGGAGGCGGTGATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGATTCGTGAGTTTTCGATCGCCATTGACTGCGGAATGTGTGATGGATTAGGGTTTTCTGATTTTGATTTTTGTGCGTTTTGATTTTAGGTCACGTTTAAGGAGGCGGAATCGGCGAAGAAGGCTTGCGAGGATTCGGCTCCGATCATCAATGGCCGCCGCGCCAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGCCTCTAGGCCGGCTTCGGCTCCTCCTCCTCCTCCTCCTCCTCAGCCTGGTAAATTTCTGGGGCAGTGGCATTTTCGTAATTTCGGTTACAAAATTTGGGATATAGAGAGGAAAAAAAAACCGAAAATCCGATCAATTCACACTACAAACACACAAATCATAAGGATTGTTTTGAGTTTTTTATTTTTATTATCTTTTTTTACTACTCATTGTTTTGAGTTATAATTTTATAAATTTTATTAACTTCGATTTTTGAATTAGTCCATTTATATATATATATATATCATTTATTTTTTTTGAGGCAGTCATGTTTGATTCAATTCGACGTAACTTAGCAAGATTAATTAATATAATAAATTATCTAAGAGAATTTACCAGTACATCTTGGTATTATATTTGCAGTAGATTTATTATTTTTTTTAAAAAATAATTCATCTATAACACATTAATTTCTATTACCGATAGAAAATTCAAAGAGTGATAGAACTCAATTTGAATTTTCTGCTACAAATGAATTAGTTTTGATTTTGTACTATACATAAAAGTATTTTGCCATGTTATAGATGCAAAATCCTCACTGTCTAATATATTAATAAACAAGACGTACCAATGAAATATATGAATTTAATTTTATTCCTTTTGAAAAAAAACGAAATACTTAATTTAAATTTATTATTTTTTTAGTAGAAGTTAGAGGTGAAGTGTTTCTCGAGATCGAACCGTTGACAATAATATTGAACTAAATTATCAACCAAGAATAAAATTATTATACCATGGATAAGTTTGGTTTAAGTATAAATTTTTTTAATTTTTAATTATGAGTTGAATTTTAGGATACAATAAGAAATTAACTAAATTTGAGAATCCAATCCAACCAATTTTAAAATAAAAATTTTGATTTGACTAAAAAAATTATTCTATTCTAATTCAATCCATGTAAAGTTTCATTTGACGGTTGAGATCTGAAGTTGATTTTGTGATGGATGGAAGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCAGCACACGGTAACCACGTGCAGTGGTACTACCCGGCAGGGACTCATCCGACGCCGTTTCATCATCAGCCTCACCAAACCGTTCCTTTTTATGGGTATAACTTTTTATCCAATGAATGCCCATATTCTAATACTACCCTTTTTTTTTAATTTTGTTTTTTTTATTAAATCAACGTAAATTTCGTTTTCTTTTAGATACCCTCCAAGCCCCACTTACATAGCTACCGATATCGGTTACAACCAAGTAAGTAATATTTTATGCATAATTATAATTTTCCCTTTTTTTTATCACGTTAATAAATATTAGGAAAAGTTCCAATAATGTGTTGGACTCGACTTTTTCATTTTTAGAGATTTATTAGTTATGTTCTTAAAAATTGGATCAAACTTAATATAACTTTTGATTTAAAAAGTATAAAAACTATCCAATATATGTGATATTTTAGGTAAGTTGTTAACTACTATTTAATTTTCTTATAAGACAATCTCATTTATCTCTCATACATTGTTATTGTTATTAAGAACCTAATGGAACTCTAGTAAGAATTTCTTTAATCTCTATATACTTTATGATTAGAGATATTAGAAAGCAATCTTAAAGCCAACTTGAATATACTTAACATTTAGAACAGTGGCAATTGTTGCATTTTGAAACCTTTTGGACAGTCTTTATAGTTTTAAAAGTTAAAATATATTTTTTTTTATTGATTTGATAAATACTATGGATATATATAGAGTTTCAAGAGTTTAGAAGATGGGAAAGAATGTGGTTGAACTATACATATACATATATAATATGAGTTTTTTTTGAAGTTATGACAAGGGGTATGGTAGGAAAAGTAAAGGGAAAAGAGTGTGAATAATGAAACGGCGACGTTTTGATGATGATCACAGAAAGTAGGCTACATGAACGGGCACTACACACAGATGTATCCAGGGCAGGCAATGGTAGGAGCGAACACATTGATGCCGATGTACCCGATGTATCATTACCATCAATCACATGCCATGGGGATGCCGGCCCACATATTCCCTCCCAGCCCCACGGCGGCCGGTCCGTTCACACCGCTCCCACCCGCTTCCATGATCTCCAAACCGGCCTCCGTTGGCCCCAACCCAGGTCCCTTCCTTTCTCTTCACCCATTTTTATCTATATTCTCCGCAATCACATTTTCGGGTGGACGATAAAAAAACAGACCACCTAATCTAAACCTTAATAGTGGTCATAATTCTCTTTGAGGTTGGTTAGGGCAAGAAAATGTGTAATTAACGAGTTTGGTTTTCAGGGTTGGCCAACTTTTAGCTGAGTTTAACATAACTTACCTCGTACTAAGAATTTATGGTAACATATTGATAGAGAGCATGCAGTAATAAGATAAACCGACAAATCTGAACAATAGAGGTTAGATTCAAAAAGTTACTTTTAACCTAACTTCAACCTACATTGAAGCTGTATTGTTATGTACACCCCCCCCATACATTCCCTTTTCCCCTTTCCTATGTTGGGTTGTGCTTTGTTTTTTGTGATGAGCTAAGATAGGACTTGTAGCCTTTTGCCCATTGTTTTGCTTTGCATGTTCCCAAACAAAAACAAATACGGTCAAGTCAATAGTCAAACGTTATTAACAAGGGAAAAACAAAAAAACAGATCAGAGCCCTTCACGTGAAAGGGTTATTTTTTTAGTAAAGGGGTTTTCCATTCCTCCCCCACTGCCAGCTGGCCTCCCTGGTCCCACGTGGCCAGCTTCCTCTGCTTGCTGTCCGGTCCCTTTCCAGTTGTTAATATTCCCTAATGTCAAGGACTCTTTTGCAAATTCTACTACTTTTCTACATTGTTAACACAAAGAATCAAATCTTTTCTAGTTTCATAATGTTGTTCTACTAGGATTACATAATAGTTCCAAGTTTATATTGTTTTCAAGGGGCGACACAATAATTGAAGACTTGGTTTTGAGGGTATACTCCCCTTAAAGTCCTAAGTTCGAGACTCATTTGTGACATTACTCCTTCAATGTCTTCAGAGCCTGACCTAAGGACCGGCGTGACTACCTTTGTTTTAAAATATAGTTCATGCTTATATTCTATATAAAATCTCACATTTAACTCACAACACTTATATGACATAGGAGTGATTTTGATTAATAACTCTTTAGCTCCTAAAATTCATGTGAGTAGAAGAGAAATCATCTTTTTAGGGGATATAGTGATCAAAATTTTCACATATAAATGAGCTATTTCTCTTTTTTGTCAATTAATTTTGAGATTTAACCCATATTTACCTAATAACTTTGGTTGAGTACATGTACTGAAAGGCTTGTAAGTTTTCTCGAGTATACCTATAAAAGAACCATCATAGGTTTACCCTAAGTTCAATATTCATGGTGATTATCTAATTTTATATATAGATTTTCTTGACGGTTGTGAAATATTGTAAGGTCAAACGATTAATCTCGTGATAATAGTTGAGGTGTGCGTAACGTTATCTAAAAACCCACCCACTCATTAAAAAAAATGTATAAAAGACTTATAAGTTTTAGATCTAGTAACCATTTTTACATGGTGGGTTATACATAGCACAAAAGATCAGATTCATCATTTGAATTTCTGTTTTGGGTTCTTTTTTTTTTTTTCTCTCTAACTTAACTGCATTTCTGTGTATATGATGAATTTATGAATTATATAGAATGAGTTAGAATTGAATGATGATAATTAAACTGATATTACAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTAATACAGTTGGAGGAGGATGCAAGGGAAGAAGATGATGATGATGATGGTAAAAGAAGAGCAAAGAAGAATTAAATATAAAAAGGGACAGGCAGGCAGGCAGGCTAAGAGGGACCCTATTTTATTTTATTTTTTTTAATCTGAACAACTCATTCTCTCTCAGTACATGCAGGC

mRNA sequence

CTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCAATTTCTTTATTCCCATAACCCACTCTGTTCTTCACACTCAATTCCTTTATATATATATATATATAATCTTTTTTTCTTCCATTTCTCACTTCTTCAATTTCTGCTGCTTTGATTTCGGAGGAAAACACAGAGTCGCCGGAATGTCGATGGCGAGCAACAACGGAGGTGTGTTTGGGGACACGACGTTGACCAAGGTCTTCGTCGGAGGCCTGGCGTGGGAGACTCCGAAGGAGGCCATGAGAGACCACTTCGAGAGGTTCGGCGAGATCCTGGAGGCGGTGATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGATTCGTCACGTTTAAGGAGGCGGAATCGGCGAAGAAGGCTTGCGAGGATTCGGCTCCGATCATCAATGGCCGCCGCGCCAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGCCTCTAGGCCGGCTTCGGCTCCTCCTCCTCCTCCTCCTCCTCAGCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCAGCACACGGTAACCACGTGCAGTGGTACTACCCGGCAGGGACTCATCCGACGCCGTTTCATCATCAGCCTCACCAAACCGTTCCTTTTTATGGATACCCTCCAAGCCCCACTTACATAGCTACCGATATCGGTTACAACCAAAAAGTAGGCTACATGAACGGGCACTACACACAGATGTATCCAGGGCAGGCAATGGTAGGAGCGAACACATTGATGCCGATGTACCCGATGTATCATTACCATCAATCACATGCCATGGGGATGCCGGCCCACATATTCCCTCCCAGCCCCACGGCGGCCGGTCCGTTCACACCGCTCCCACCCGCTTCCATGATCTCCAAACCGGCCTCCGTTGGCCCCAACCCAGGTAATACAGTTGGAGGAGGATGCAAGGGAAGAAGATGATGATGATGATGGTAAAAGAAGAGCAAAGAAGAATTAAATATAAAAAGGGACAGGCAGGCAGGCAGGCTAAGAGGGACCCTATTTTATTTTATTTTTTTTAATCTGAACAACTCATTCTCTCTCAGTACATGCAGGC

Coding sequence (CDS)

ATGTCGATGGCGAGCAACAACGGAGGTGTGTTTGGGGACACGACGTTGACCAAGGTCTTCGTCGGAGGCCTGGCGTGGGAGACTCCGAAGGAGGCCATGAGAGACCACTTCGAGAGGTTCGGCGAGATCCTGGAGGCGGTGATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGATTCGTCACGTTTAAGGAGGCGGAATCGGCGAAGAAGGCTTGCGAGGATTCGGCTCCGATCATCAATGGCCGCCGCGCCAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGCCTCTAGGCCGGCTTCGGCTCCTCCTCCTCCTCCTCCTCCTCAGCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCAGCACACGGTAACCACGTGCAGTGGTACTACCCGGCAGGGACTCATCCGACGCCGTTTCATCATCAGCCTCACCAAACCGTTCCTTTTTATGGATACCCTCCAAGCCCCACTTACATAGCTACCGATATCGGTTACAACCAAAAAGTAGGCTACATGAACGGGCACTACACACAGATGTATCCAGGGCAGGCAATGGTAGGAGCGAACACATTGATGCCGATGTACCCGATGTATCATTACCATCAATCACATGCCATGGGGATGCCGGCCCACATATTCCCTCCCAGCCCCACGGCGGCCGGTCCGTTCACACCGCTCCCACCCGCTTCCATGATCTCCAAACCGGCCTCCGTTGGCCCCAACCCAGGTAATACAGTTGGAGGAGGATGCAAGGGAAGAAGATGA

Protein sequence

MSMASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTTSAAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGHYTQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPASVGPNPGNTVGGGCKGRR

Homology

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BLAST of Sed0004219 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida])

HSP 1 Score: 451.8 bits (1161), Expect = 3.9e-123
Identity = 221/256 (86.33%), Postives = 235/256 (91.80%), Query Frame = 0


Query: 5   SNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVT 64
           +NN G+FGDTTLTKVFVGGLAWETPKEAMRDHFE+FGEILEAVIISDKLTGRSKGYGFVT
Sbjct: 12  NNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 71

Query: 65  FKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTT 124
           FK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSNGGGPRTT
Sbjct: 72  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTT 131

Query: 125 S--AAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGHY 184
           S  A  GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GYMNGHY
Sbjct: 132 SATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHY 191

Query: 185 TQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPA 244
           TQMYPGQAMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP+S++SKPA
Sbjct: 192 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPSSIMSKPA 251

Query: 245 SVGPNPGNTVGGGCKG 259
           SVGPNPG TVGGGC+G
Sbjct: 252 SVGPNPG-TVGGGCRG 266

[Close]

BLAST of Sed0004219 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida])

HSP 1 Score: 439.1 bits (1128), Expect = 2.6e-119
Identity = 213/246 (86.59%), Postives = 226/246 (91.87%), Query Frame = 0


Query: 5   SNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVT 64
           +NN G+FGDTTLTKVFVGGLAWETPKEAMRDHFE+FGEILEAVIISDKLTGRSKGYGFVT
Sbjct: 12  NNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVT 71

Query: 65  FKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTT 124
           FK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSNGGGPRTT
Sbjct: 72  FKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTT 131

Query: 125 S--AAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGHY 184
           S  A  GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GYMNGHY
Sbjct: 132 SATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGHY 191

Query: 185 TQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPA 244
           TQMYPGQAMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP+S++SKPA
Sbjct: 192 TQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPSSIMSKPA 251

Query: 245 SVGPNP 249
           SVGPNP
Sbjct: 252 SVGPNP 257

[Close]

BLAST of Sed0004219 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 437.2 bits (1123), Expect = 1.0e-118
Identity = 215/253 (84.98%), Postives = 228/253 (90.12%), Query Frame = 0


Query: 4   ASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFV 63
           +S N G+FGDTTLTKVFVGGLAWETPKEAMRDHF +FGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 64  TFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRT 123
           TFK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSN GGPRT
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRT 132

Query: 124 TSA--AHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGH 183
           TSA  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GYMNGH
Sbjct: 133 TSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGH 192

Query: 184 YTQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKP 243
           YTQMYPGQAMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP S++SKP
Sbjct: 193 YTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKP 252

Query: 244 ASVGPNPGNTVGG 255
            +VGPNPG TVGG
Sbjct: 253 TTVGPNPG-TVGG 264

[Close]

BLAST of Sed0004219 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 2.5e-117
Identity = 210/247 (85.02%), Postives = 223/247 (90.28%), Query Frame = 0


Query: 4   ASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFV 63
           +S N G+FGDTTLTKVFVGGLAWETPKEAMRDHF +FGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 64  TFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRT 123
           TFK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSN GGPRT
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRT 132

Query: 124 TSA--AHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGH 183
           TSA  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GYMNGH
Sbjct: 133 TSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGH 192

Query: 184 YTQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKP 243
           YTQMYPGQAMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP S++SKP
Sbjct: 193 YTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKP 252

Query: 244 ASVGPNP 249
            +VGPNP
Sbjct: 253 TTVGPNP 259

[Close]

BLAST of Sed0004219 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 4.2e-117
Identity = 213/254 (83.86%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 4   ASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFV 63
           ++ N G+FGDTTLTKVFVGGLAWETPKEAMRDHF++FGEILEAVIISDKLTGRSKGYGFV
Sbjct: 10  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 69

Query: 64  TFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRT 123
           TFK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSNGGGPRT
Sbjct: 70  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRT 129

Query: 124 TSA--AHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGH 183
           T+A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GY+NGH
Sbjct: 130 TTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGH 189

Query: 184 YTQMYPGQ-AMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISK 243
           YTQMYPGQ AMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP S++SK
Sbjct: 190 YTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 249

Query: 244 PASVGPNPGNTVGG 255
           P +VGPNPG TVGG
Sbjct: 250 PTTVGPNPG-TVGG 262

[Close]

BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-57
Identity = 139/279 (49.82%), Postives = 163/279 (58.42%), Query Frame = 0


Query: 1   MSMASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGY 60
           M+ ++N  G FGDT LTKVFVGGLAW+T KEAM DHF ++G+ILEAVIISDKLT RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 61  GFVTFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGG 120
           GFVTFK+A++A +ACEDS PIINGRRANCNLASLG R    P    P   P        G
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPK------NG 120

Query: 121 PRTTSAAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVG---- 180
            R T    GNH QWYYP+G        Q HQ VPFYGYP +  Y+A ++ +NQKVG    
Sbjct: 121 NRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSA--YVAPNMTFNQKVGYVGG 180

Query: 181 -YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPMYHYHQSHAMGMPA 240
            YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G P 
Sbjct: 181 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQ 240

Query: 241 HIFPPSPTAAGPFTPLPPASMISKPASVGPNP-GNTVGG 255
             F                   SKP S    P   TVGG
Sbjct: 241 PSF-------------------SKPLSFSTPPISGTVGG 252

[Close]

BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 6.9e-22
Identity = 49/88 (55.68%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 13  DTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAK 72
           DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  +  +A+
Sbjct: 30  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89

Query: 73  KACEDSAPIINGRRANCNLASLGARRAS 101
           +AC+D  PII+GR+AN NLA LGA+  S
Sbjct: 90  RACKDPNPIIDGRKANVNLAYLGAKPRS 117

[Close]

BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.0e-22
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 13  DTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAK 72
           DTT TK+FVGGL + T   ++R +FE FGEI EAV+I+D+ TG+S+GYGFVT  +  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73  KACEDSAPIINGRRANCNLASLGAR-RASRPASA 106
           +AC+D  PII+GR+AN NLA LGA+ R  +P  A
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFA 100

[Close]

BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 13  DTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAK 72
           DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  +  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 73  KACEDSAPIINGRRANCNLASLGARRAS 101
           +AC+D  PII+GR+AN NLA LGA+  S
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLGAKPRS 115

[Close]

BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-21
Identity = 51/94 (54.26%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 13  DTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAK 72
           DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  +  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 73  KACEDSAPIINGRRANCNLASLGAR-RASRPASA 106
           +AC+D  PII+GR+AN NLA LGA+ R  +P  A
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFA 100

[Close]

BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.8e-119
Identity = 215/253 (84.98%), Postives = 228/253 (90.12%), Query Frame = 0


Query: 4   ASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFV 63
           +S N G+FGDTTLTKVFVGGLAWETPKEAMRDHF +FGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 64  TFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRT 123
           TFK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSN GGPRT
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNAGGPRT 132

Query: 124 TSA--AHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGH 183
           TSA  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GYMNGH
Sbjct: 133 TSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNGH 192

Query: 184 YTQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKP 243
           YTQMYPGQAMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP S++SKP
Sbjct: 193 YTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKP 252

Query: 244 ASVGPNPGNTVGG 255
            +VGPNPG TVGG
Sbjct: 253 TTVGPNPG-TVGG 264

[Close]

BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 2.0e-117
Identity = 213/254 (83.86%), Postives = 230/254 (90.55%), Query Frame = 0


Query: 4   ASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFV 63
           ++ N G+FGDTTLTKVFVGGLAWETPKEAMRDHF++FGEILEAVIISDKLTGRSKGYGFV
Sbjct: 10  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 69

Query: 64  TFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRT 123
           TFK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSNGGGPRT
Sbjct: 70  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRT 129

Query: 124 TSA--AHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGH 183
           T+A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GY+NGH
Sbjct: 130 TTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGH 189

Query: 184 YTQMYPGQ-AMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISK 243
           YTQMYPGQ AMVGANTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP S++SK
Sbjct: 190 YTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 249

Query: 244 PASVGPNPGNTVGG 255
           P +VGPNPG TVGG
Sbjct: 250 PTTVGPNPG-TVGG 262

[Close]

BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A6J1GZK2 (probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458665 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.7e-117
Identity = 217/250 (86.80%), Postives = 228/250 (91.20%), Query Frame = 0


Query: 10  VFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAE 69
           +FGDTTLTKVFVGGLAWETPKEAMRDHFE+FG+ILEAVII+DKLTGRSKGYGFVTFKEAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKEAE 60

Query: 70  SAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTTSAAHG 129
           SAKKACEDSAPIINGRRANCNLASLGARR+SR ASA  PP  PQPGSNGG PRTTSAA G
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASA-TPPQGPQPGSNGGAPRTTSAAAG 120

Query: 130 NHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYN-QKVGYMN-GHYTQMYP 189
           NHVQWYYPAGTHPT FHHQPHQ VPFYGY PSPTYIATDI YN QKVGYMN G Y Q+YP
Sbjct: 121 NHVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 190 GQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPASVGPN 249
           GQAMVGANTLMPMYP+YHYHQS AMGMPAHIFPPSPTAAGPF  +PP S++SKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAGVPPTSIMSKPASVGPN 240

Query: 250 PGNTVGGGCK 258
           PG   GGGC+
Sbjct: 241 PGRVGGGGCR 249

[Close]

BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A6J1FUE8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.9e-117
Identity = 214/254 (84.25%), Postives = 227/254 (89.37%), Query Frame = 0


Query: 3   MASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGF 62
           M++NN G+FGDTTLTKVFVGGLAWETPKEAMRDHFE+FGEILEAVIISDKLTGRSKGYGF
Sbjct: 2   MSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGF 61

Query: 63  VTFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPR 122
           VTFK+AESAKKACEDSAPIINGRRANCNLASLGARR SR ASA PP  P  PGSNGGGPR
Sbjct: 62  VTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPR 121

Query: 123 TTSAAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGHY 182
           TTSA  GNHVQWYYPAGT+PT F HQPHQ VPFYGY PSPTYIATDI YN KVGYMNGHY
Sbjct: 122 TTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGHY 181

Query: 183 TQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPA 242
            Q+YPGQAMVGANTLMPMYP+YHYHQSHAMGMPAHI+PPSPTAA     +PP+S++SKPA
Sbjct: 182 RQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAA-----VPPSSIMSKPA 241

Query: 243 SVGPNPGNTVGGGC 257
           SV P PG  VGG C
Sbjct: 242 SVAPTPGK-VGGEC 249

[Close]

BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 3.8e-116
Identity = 208/249 (83.53%), Postives = 225/249 (90.36%), Query Frame = 0


Query: 4   ASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFV 63
           ++ N G+FGDTTLTKVFVGGLAWETPKEAMRDHF++FGEILEAVIISDKLTGRSKGYGFV
Sbjct: 10  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 69

Query: 64  TFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRT 123
           TFK+AESAKKACEDSAPIINGRRANCNLASLGARR    +++  PP  PQPGSNGGGPRT
Sbjct: 70  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRT 129

Query: 124 TSA--AHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGH 183
           T+A  A GNHVQWYYPAGTHPTPFHHQPHQ VPFYGY PSPTYIATDI YN K+GY+NGH
Sbjct: 130 TTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGH 189

Query: 184 YTQMYPGQ-AMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISK 243
           YTQMYPGQ AMVG NTLMPMYP+YHYHQSHAMGMPAHIFPPSPT AGPF  +PP S++SK
Sbjct: 190 YTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 249

Query: 244 PASVGPNPG 250
           P +VGPNPG
Sbjct: 250 PTTVGPNPG 258

[Close]

BLAST of Sed0004219 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-58
Identity = 139/279 (49.82%), Postives = 163/279 (58.42%), Query Frame = 0


Query: 1   MSMASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGY 60
           M+ ++N  G FGDT LTKVFVGGLAW+T KEAM DHF ++G+ILEAVIISDKLT RSKGY
Sbjct: 1   MTTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 60

Query: 61  GFVTFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGG 120
           GFVTFK+A++A +ACEDS PIINGRRANCNLASLG R    P    P   P        G
Sbjct: 61  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPK------NG 120

Query: 121 PRTTSAAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVG---- 180
            R T    GNH QWYYP+G        Q HQ VPFYGYP +  Y+A ++ +NQKVG    
Sbjct: 121 NRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPSA--YVAPNMTFNQKVGYVGG 180

Query: 181 -YMNGHYTQMYP------------------GQAMVG-ANTLMPMYPMYHYHQSHAMGMPA 240
            YMNG+Y QM P                  G+ MVG A+ ++P Y +Y YHQS A+G P 
Sbjct: 181 TYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGFPQ 240

Query: 241 HIFPPSPTAAGPFTPLPPASMISKPASVGPNP-GNTVGG 255
             F                   SKP S    P   TVGG
Sbjct: 241 PSF-------------------SKPLSFSTPPISGTVGG 252

[Close]

BLAST of Sed0004219 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 3.0e-44
Identity = 116/247 (46.96%), Postives = 137/247 (55.47%), Query Frame = 0


Query: 33  MRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAKKACEDSAPIINGRRANCNLA 92
           M DHF ++G+ILEAVIISDKLT RSKGYGFVTFK+A++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 93  SLGARRASRPASAPPPPPPPQPGSNGGGPRTTSAAHGNHVQWYYPAGTHPTPFHHQPHQT 152
           SLG R   RP +               G R T    GNH QWYYP+G        Q HQ 
Sbjct: 61  SLGGR--LRPKN---------------GNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQA 120

Query: 153 VPFYGYPPSPTYIATDIGYNQKVG-----YMNGHYTQMYP------------------GQ 212
           VPFYGYP +  Y+A ++ +NQKVG     YMNG+Y QM P                  G+
Sbjct: 121 VPFYGYPSA--YVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGR 180

Query: 213 AMVG-ANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPASVGPNP 255
            MVG A+ ++P Y +Y YHQS A+G P   F                   SKP S    P
Sbjct: 181 VMVGAASPMVPFYTVYPYHQSQAIGFPQPSF-------------------SKPLSFSTPP 209

[Close]

BLAST of Sed0004219 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37
Identity = 101/240 (42.08%), Postives = 127/240 (52.92%), Query Frame = 0


Query: 8   GGV-FGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFK 67
           GG+  GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF+
Sbjct: 3   GGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62

Query: 68  EAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTTSA 127
           EAE+A+ AC D+ P+I+GRRANCNLASLG +R+           P  P   GGG      
Sbjct: 63  EAEAARSACVDATPVIDGRRANCNLASLGLQRSK----------PSTPNHGGGGRINNMR 122

Query: 128 AHGNHVQWYY--PAGTHPTPFHHQPHQTVPFYGYPP-SPTYIATDIGYNQKVGYMNGHYT 187
              + +Q  +  P    P  F H PH  +  +GY P SP Y +         G  +G   
Sbjct: 123 VMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 182

Query: 188 QMY------PGQAMVGANTLMPMY---------------PMYHYHQSHAMGMPAHIFPPS 223
            +Y       G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 183 GVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

[Close]

BLAST of Sed0004219 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37
Identity = 101/240 (42.08%), Postives = 127/240 (52.92%), Query Frame = 0


Query: 8   GGV-FGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFK 67
           GG+  GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF+
Sbjct: 3   GGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62

Query: 68  EAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTTSA 127
           EAE+A+ AC D+ P+I+GRRANCNLASLG +R+           P  P   GGG      
Sbjct: 63  EAEAARSACVDATPVIDGRRANCNLASLGLQRSK----------PSTPNHGGGGRINNMR 122

Query: 128 AHGNHVQWYY--PAGTHPTPFHHQPHQTVPFYGYPP-SPTYIATDIGYNQKVGYMNGHYT 187
              + +Q  +  P    P  F H PH  +  +GY P SP Y +         G  +G   
Sbjct: 123 VMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 182

Query: 188 QMY------PGQAMVGANTLMPMY---------------PMYHYHQSHAMGMPAHIFPPS 223
            +Y       G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 183 GVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

[Close]

BLAST of Sed0004219 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37
Identity = 101/240 (42.08%), Postives = 127/240 (52.92%), Query Frame = 0


Query: 8   GGV-FGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFK 67
           GG+  GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF+
Sbjct: 3   GGIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFR 62

Query: 68  EAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTTSA 127
           EAE+A+ AC D+ P+I+GRRANCNLASLG +R+           P  P   GGG      
Sbjct: 63  EAEAARSACVDATPVIDGRRANCNLASLGLQRSK----------PSTPNHGGGGRINNMR 122

Query: 128 AHGNHVQWYY--PAGTHPTPFHHQPHQTVPFYGYPP-SPTYIATDIGYNQKVGYMNGHYT 187
              + +Q  +  P    P  F H PH  +  +GY P SP Y +         G  +G   
Sbjct: 123 VMMSTMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQY 182

Query: 188 QMY------PGQAMVGANTLMPMY---------------PMYHYHQSHAMGMPAHIFPPS 223
            +Y       G     A +  P Y               P YH+  S+    P H  PP+
Sbjct: 183 GVYGNRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

The following BLAST results are available for this feature:

BLAST of Sed0004219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891949.1	3.9e-123	86.33	probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]	[more]
XP_038891950.1	2.6e-119	86.59	probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]	[more]
XP_004143608.1	1.0e-118	84.98	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_011654915.1	2.5e-117	85.02	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]
XP_008445852.2	4.2e-117	83.86	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]

BLAST of Sed0004219 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.7e-57	49.82	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9H0Z9	6.9e-22	55.68	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q9BX46	9.0e-22	55.32	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q62176	1.2e-21	55.68	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q6GQD3	1.5e-21	54.26	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]

BLAST of Sed0004219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNL6	4.8e-119	84.98	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A1S3BEI0	2.0e-117	83.86	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1GZK2	2.7e-117	86.80	probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1FUE8	5.9e-117	84.25	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5A7SY01	3.8e-116	83.53	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Sed0004219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	1.2e-58	49.82	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	3.0e-44	46.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	7.8e-37	42.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	7.8e-37	42.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	7.8e-37	42.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 18..90 e-value: 6.5E-23 score: 92.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 19..76 e-value: 1.1E-16 score: 60.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 17..94 score: 17.097071
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..98 e-value: 5.1E-24 score: 86.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 3..243
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 3..243
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 17..92 e-value: 1.93414E-41 score: 135.435
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004219.1	Sed0004219.1	mRNA
Sed0004219.2	Sed0004219.2	mRNA
Sed0004219.3	Sed0004219.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding