
Sed0004219 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCAATTTCTTTATTCCCATAACCCACTCTGTTCTTCACACTCAATTCCTTTATATATATATATATATAATCTTTTTTTCTTCCATTTCTCACTTCTTCAATTTCTGCTGCTTTGATTTCGGAGGAAAACACAGAGTCGCCGGAATGTCGATGGCGAGCAACAACGGAGGTGTGTTTGGGGACACGACGTTGACCAAGGTCTTCGTCGGAGGCCTGGCGTGGGAGACTCCGAAGGAGGCCATGAGAGACCACTTCGAGAGGTTCGGCGAGATCCTGGAGGCGGTGATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGATTCGTGAGTTTTCGATCGCCATTGACTGCGGAATGTGTGATGGATTAGGGTTTTCTGATTTTGATTTTTGTGCGTTTTGATTTTAGGTCACGTTTAAGGAGGCGGAATCGGCGAAGAAGGCTTGCGAGGATTCGGCTCCGATCATCAATGGCCGCCGCGCCAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGCCTCTAGGCCGGCTTCGGCTCCTCCTCCTCCTCCTCCTCCTCAGCCTGGTAAATTTCTGGGGCAGTGGCATTTTCGTAATTTCGGTTACAAAATTTGGGATATAGAGAGGAAAAAAAAACCGAAAATCCGATCAATTCACACTACAAACACACAAATCATAAGGATTGTTTTGAGTTTTTTATTTTTATTATCTTTTTTTACTACTCATTGTTTTGAGTTATAATTTTATAAATTTTATTAACTTCGATTTTTGAATTAGTCCATTTATATATATATATATATCATTTATTTTTTTTGAGGCAGTCATGTTTGATTCAATTCGACGTAACTTAGCAAGATTAATTAATATAATAAATTATCTAAGAGAATTTACCAGTACATCTTGGTATTATATTTGCAGTAGATTTATTATTTTTTTTAAAAAATAATTCATCTATAACACATTAATTTCTATTACCGATAGAAAATTCAAAGAGTGATAGAACTCAATTTGAATTTTCTGCTACAAATGAATTAGTTTTGATTTTGTACTATACATAAAAGTATTTTGCCATGTTATAGATGCAAAATCCTCACTGTCTAATATATTAATAAACAAGACGTACCAATGAAATATATGAATTTAATTTTATTCCTTTTGAAAAAAAACGAAATACTTAATTTAAATTTATTATTTTTTTAGTAGAAGTTAGAGGTGAAGTGTTTCTCGAGATCGAACCGTTGACAATAATATTGAACTAAATTATCAACCAAGAATAAAATTATTATACCATGGATAAGTTTGGTTTAAGTATAAATTTTTTTAATTTTTAATTATGAGTTGAATTTTAGGATACAATAAGAAATTAACTAAATTTGAGAATCCAATCCAACCAATTTTAAAATAAAAATTTTGATTTGACTAAAAAAATTATTCTATTCTAATTCAATCCATGTAAAGTTTCATTTGACGGTTGAGATCTGAAGTTGATTTTGTGATGGATGGAAGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCAGCACACGGTAACCACGTGCAGTGGTACTACCCGGCAGGGACTCATCCGACGCCGTTTCATCATCAGCCTCACCAAACCGTTCCTTTTTATGGGTATAACTTTTTATCCAATGAATGCCCATATTCTAATACTACCCTTTTTTTTTAATTTTGTTTTTTTTATTAAATCAACGTAAATTTCGTTTTCTTTTAGATACCCTCCAAGCCCCACTTACATAGCTACCGATATCGGTTACAACCAAGTAAGTAATATTTTATGCATAATTATAATTTTCCCTTTTTTTTATCACGTTAATAAATATTAGGAAAAGTTCCAATAATGTGTTGGACTCGACTTTTTCATTTTTAGAGATTTATTAGTTATGTTCTTAAAAATTGGATCAAACTTAATATAACTTTTGATTTAAAAAGTATAAAAACTATCCAATATATGTGATATTTTAGGTAAGTTGTTAACTACTATTTAATTTTCTTATAAGACAATCTCATTTATCTCTCATACATTGTTATTGTTATTAAGAACCTAATGGAACTCTAGTAAGAATTTCTTTAATCTCTATATACTTTATGATTAGAGATATTAGAAAGCAATCTTAAAGCCAACTTGAATATACTTAACATTTAGAACAGTGGCAATTGTTGCATTTTGAAACCTTTTGGACAGTCTTTATAGTTTTAAAAGTTAAAATATATTTTTTTTTATTGATTTGATAAATACTATGGATATATATAGAGTTTCAAGAGTTTAGAAGATGGGAAAGAATGTGGTTGAACTATACATATACATATATAATATGAGTTTTTTTTGAAGTTATGACAAGGGGTATGGTAGGAAAAGTAAAGGGAAAAGAGTGTGAATAATGAAACGGCGACGTTTTGATGATGATCACAGAAAGTAGGCTACATGAACGGGCACTACACACAGATGTATCCAGGGCAGGCAATGGTAGGAGCGAACACATTGATGCCGATGTACCCGATGTATCATTACCATCAATCACATGCCATGGGGATGCCGGCCCACATATTCCCTCCCAGCCCCACGGCGGCCGGTCCGTTCACACCGCTCCCACCCGCTTCCATGATCTCCAAACCGGCCTCCGTTGGCCCCAACCCAGGTCCCTTCCTTTCTCTTCACCCATTTTTATCTATATTCTCCGCAATCACATTTTCGGGTGGACGATAAAAAAACAGACCACCTAATCTAAACCTTAATAGTGGTCATAATTCTCTTTGAGGTTGGTTAGGGCAAGAAAATGTGTAATTAACGAGTTTGGTTTTCAGGGTTGGCCAACTTTTAGCTGAGTTTAACATAACTTACCTCGTACTAAGAATTTATGGTAACATATTGATAGAGAGCATGCAGTAATAAGATAAACCGACAAATCTGAACAATAGAGGTTAGATTCAAAAAGTTACTTTTAACCTAACTTCAACCTACATTGAAGCTGTATTGTTATGTACACCCCCCCCATACATTCCCTTTTCCCCTTTCCTATGTTGGGTTGTGCTTTGTTTTTTGTGATGAGCTAAGATAGGACTTGTAGCCTTTTGCCCATTGTTTTGCTTTGCATGTTCCCAAACAAAAACAAATACGGTCAAGTCAATAGTCAAACGTTATTAACAAGGGAAAAACAAAAAAACAGATCAGAGCCCTTCACGTGAAAGGGTTATTTTTTTAGTAAAGGGGTTTTCCATTCCTCCCCCACTGCCAGCTGGCCTCCCTGGTCCCACGTGGCCAGCTTCCTCTGCTTGCTGTCCGGTCCCTTTCCAGTTGTTAATATTCCCTAATGTCAAGGACTCTTTTGCAAATTCTACTACTTTTCTACATTGTTAACACAAAGAATCAAATCTTTTCTAGTTTCATAATGTTGTTCTACTAGGATTACATAATAGTTCCAAGTTTATATTGTTTTCAAGGGGCGACACAATAATTGAAGACTTGGTTTTGAGGGTATACTCCCCTTAAAGTCCTAAGTTCGAGACTCATTTGTGACATTACTCCTTCAATGTCTTCAGAGCCTGACCTAAGGACCGGCGTGACTACCTTTGTTTTAAAATATAGTTCATGCTTATATTCTATATAAAATCTCACATTTAACTCACAACACTTATATGACATAGGAGTGATTTTGATTAATAACTCTTTAGCTCCTAAAATTCATGTGAGTAGAAGAGAAATCATCTTTTTAGGGGATATAGTGATCAAAATTTTCACATATAAATGAGCTATTTCTCTTTTTTGTCAATTAATTTTGAGATTTAACCCATATTTACCTAATAACTTTGGTTGAGTACATGTACTGAAAGGCTTGTAAGTTTTCTCGAGTATACCTATAAAAGAACCATCATAGGTTTACCCTAAGTTCAATATTCATGGTGATTATCTAATTTTATATATAGATTTTCTTGACGGTTGTGAAATATTGTAAGGTCAAACGATTAATCTCGTGATAATAGTTGAGGTGTGCGTAACGTTATCTAAAAACCCACCCACTCATTAAAAAAAATGTATAAAAGACTTATAAGTTTTAGATCTAGTAACCATTTTTACATGGTGGGTTATACATAGCACAAAAGATCAGATTCATCATTTGAATTTCTGTTTTGGGTTCTTTTTTTTTTTTTCTCTCTAACTTAACTGCATTTCTGTGTATATGATGAATTTATGAATTATATAGAATGAGTTAGAATTGAATGATGATAATTAAACTGATATTACAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTAATACAGTTGGAGGAGGATGCAAGGGAAGAAGATGATGATGATGATGGTAAAAGAAGAGCAAAGAAGAATTAAATATAAAAAGGGACAGGCAGGCAGGCAGGCTAAGAGGGACCCTATTTTATTTTATTTTTTTTAATCTGAACAACTCATTCTCTCTCAGTACATGCAGGC CTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCAATTTCTTTATTCCCATAACCCACTCTGTTCTTCACACTCAATTCCTTTATATATATATATATATAATCTTTTTTTCTTCCATTTCTCACTTCTTCAATTTCTGCTGCTTTGATTTCGGAGGAAAACACAGAGTCGCCGGAATGTCGATGGCGAGCAACAACGGAGGTGTGTTTGGGGACACGACGTTGACCAAGGTCTTCGTCGGAGGCCTGGCGTGGGAGACTCCGAAGGAGGCCATGAGAGACCACTTCGAGAGGTTCGGCGAGATCCTGGAGGCGGTGATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGATTCGTCACGTTTAAGGAGGCGGAATCGGCGAAGAAGGCTTGCGAGGATTCGGCTCCGATCATCAATGGCCGCCGCGCCAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGCCTCTAGGCCGGCTTCGGCTCCTCCTCCTCCTCCTCCTCCTCAGCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCAGCACACGGTAACCACGTGCAGTGGTACTACCCGGCAGGGACTCATCCGACGCCGTTTCATCATCAGCCTCACCAAACCGTTCCTTTTTATGGATACCCTCCAAGCCCCACTTACATAGCTACCGATATCGGTTACAACCAAAAAGTAGGCTACATGAACGGGCACTACACACAGATGTATCCAGGGCAGGCAATGGTAGGAGCGAACACATTGATGCCGATGTACCCGATGTATCATTACCATCAATCACATGCCATGGGGATGCCGGCCCACATATTCCCTCCCAGCCCCACGGCGGCCGGTCCGTTCACACCGCTCCCACCCGCTTCCATGATCTCCAAACCGGCCTCCGTTGGCCCCAACCCAGGTAATACAGTTGGAGGAGGATGCAAGGGAAGAAGATGATGATGATGATGGTAAAAGAAGAGCAAAGAAGAATTAAATATAAAAAGGGACAGGCAGGCAGGCAGGCTAAGAGGGACCCTATTTTATTTTATTTTTTTTAATCTGAACAACTCATTCTCTCTCAGTACATGCAGGC ATGTCGATGGCGAGCAACAACGGAGGTGTGTTTGGGGACACGACGTTGACCAAGGTCTTCGTCGGAGGCCTGGCGTGGGAGACTCCGAAGGAGGCCATGAGAGACCACTTCGAGAGGTTCGGCGAGATCCTGGAGGCGGTGATCATCTCCGATAAGCTCACCGGCAGATCCAAGGGCTACGGATTCGTCACGTTTAAGGAGGCGGAATCGGCGAAGAAGGCTTGCGAGGATTCGGCTCCGATCATCAATGGCCGCCGCGCCAACTGTAATCTGGCTTCGCTTGGAGCTCGGCGCGCCTCTAGGCCGGCTTCGGCTCCTCCTCCTCCTCCTCCTCCTCAGCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCAGCACACGGTAACCACGTGCAGTGGTACTACCCGGCAGGGACTCATCCGACGCCGTTTCATCATCAGCCTCACCAAACCGTTCCTTTTTATGGATACCCTCCAAGCCCCACTTACATAGCTACCGATATCGGTTACAACCAAAAAGTAGGCTACATGAACGGGCACTACACACAGATGTATCCAGGGCAGGCAATGGTAGGAGCGAACACATTGATGCCGATGTACCCGATGTATCATTACCATCAATCACATGCCATGGGGATGCCGGCCCACATATTCCCTCCCAGCCCCACGGCGGCCGGTCCGTTCACACCGCTCCCACCCGCTTCCATGATCTCCAAACCGGCCTCCGTTGGCCCCAACCCAGGTAATACAGTTGGAGGAGGATGCAAGGGAAGAAGATGA MSMASNNGGVFGDTTLTKVFVGGLAWETPKEAMRDHFERFGEILEAVIISDKLTGRSKGYGFVTFKEAESAKKACEDSAPIINGRRANCNLASLGARRASRPASAPPPPPPPQPGSNGGGPRTTSAAHGNHVQWYYPAGTHPTPFHHQPHQTVPFYGYPPSPTYIATDIGYNQKVGYMNGHYTQMYPGQAMVGANTLMPMYPMYHYHQSHAMGMPAHIFPPSPTAAGPFTPLPPASMISKPASVGPNPGNTVGGGCKGRR Homology
BLAST of Sed0004219 vs. NCBI nr
Match: XP_038891949.1 (probable RNA-binding protein ARP1 isoform X1 [Benincasa hispida]) HSP 1 Score: 451.8 bits (1161), Expect = 3.9e-123 Identity = 221/256 (86.33%), Postives = 235/256 (91.80%), Query Frame = 0
BLAST of Sed0004219 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]) HSP 1 Score: 439.1 bits (1128), Expect = 2.6e-119 Identity = 213/246 (86.59%), Postives = 226/246 (91.87%), Query Frame = 0
BLAST of Sed0004219 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]) HSP 1 Score: 437.2 bits (1123), Expect = 1.0e-118 Identity = 215/253 (84.98%), Postives = 228/253 (90.12%), Query Frame = 0
BLAST of Sed0004219 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus]) HSP 1 Score: 432.6 bits (1111), Expect = 2.5e-117 Identity = 210/247 (85.02%), Postives = 223/247 (90.28%), Query Frame = 0
BLAST of Sed0004219 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]) HSP 1 Score: 431.8 bits (1109), Expect = 4.2e-117 Identity = 213/254 (83.86%), Postives = 230/254 (90.55%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 1.7e-57 Identity = 139/279 (49.82%), Postives = 163/279 (58.42%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2) HSP 1 Score: 105.9 bits (263), Expect = 6.9e-22 Identity = 49/88 (55.68%), Postives = 68/88 (77.27%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 9.0e-22 Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2) HSP 1 Score: 105.1 bits (261), Expect = 1.2e-21 Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 1.5e-21 Identity = 51/94 (54.26%), Postives = 71/94 (75.53%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 4.8e-119 Identity = 215/253 (84.98%), Postives = 228/253 (90.12%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1) HSP 1 Score: 431.8 bits (1109), Expect = 2.0e-117 Identity = 213/254 (83.86%), Postives = 230/254 (90.55%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A6J1GZK2 (probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458665 PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 2.7e-117 Identity = 217/250 (86.80%), Postives = 228/250 (91.20%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A6J1FUE8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1) HSP 1 Score: 430.3 bits (1105), Expect = 5.9e-117 Identity = 214/254 (84.25%), Postives = 227/254 (89.37%), Query Frame = 0
BLAST of Sed0004219 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1) HSP 1 Score: 427.6 bits (1098), Expect = 3.8e-116 Identity = 208/249 (83.53%), Postives = 225/249 (90.36%), Query Frame = 0
BLAST of Sed0004219 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 224.2 bits (570), Expect = 1.2e-58 Identity = 139/279 (49.82%), Postives = 163/279 (58.42%), Query Frame = 0
BLAST of Sed0004219 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 176.4 bits (446), Expect = 3.0e-44 Identity = 116/247 (46.96%), Postives = 137/247 (55.47%), Query Frame = 0
BLAST of Sed0004219 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37 Identity = 101/240 (42.08%), Postives = 127/240 (52.92%), Query Frame = 0
BLAST of Sed0004219 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37 Identity = 101/240 (42.08%), Postives = 127/240 (52.92%), Query Frame = 0
BLAST of Sed0004219 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 151.8 bits (382), Expect = 7.8e-37 Identity = 101/240 (42.08%), Postives = 127/240 (52.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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