Sed0004206 (gene) Chayote v1

Overview


Name	Sed0004206
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG07: 39136928 .. 39137421 (+)
RNA-Seq Expression	Sed0004206
Synteny	Sed0004206

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCCTACTTGCAAGGGCAAGACCTATGGGAGGTCGTTGGCGGGAGTGAAACTACGCCGCCAGAGGAGGATGCTAATGGCGCTTTGCGAAAATGGAAAATCAAAGCAGGCAAAGCAATGTTTGCCTTAAAGACCACCATCGAAGAAGAGATGTTGGAGCATATTCGGGACAACAAAACACCTAAAGAATCATGGGACACATTTGCGATGCTCTTCTCAAATAAGAATGATACGAGGCTACAACTTCTGGAGAGTGAGCTATTATCAATCTCACAACGCAACATGACGATCGCTCAACACTTCCACAAGGTCAAGTCGATCTGTCGGGAGATTACTGAACTATATCCAAAGTCTCTATCGGAGAAGCTCGGATGAAGAGGATCATCATCCACGGATTGCGACCGGGGTATAGAAGCTTCATCATTGCTGTACAAGGATGGCCTACCCAACCATCACTTGTAGAGTTCGAAAATTTGCTAGCCAGTCAATAA

mRNA sequence

ATGATGTCCTACTTGCAAGGGCAAGACCTATGGGAGGTCGTTGGCGGGAGTGAAACTACGCCGCCAGAGGAGGATGCTAATGGCGCTTTGCGAAAATGGAAAATCAAAGCAGAAGCTCGGATGAAGAGGATCATCATCCACGGATTGCGACCGGGGTATAGAAGCTTCATCATTGCTGTACAAGGATGGCCTACCCAACCATCACTTGTAGAGTTCGAAAATTTGCTAGCCAGTCAATAA

Coding sequence (CDS)

ATGATGTCCTACTTGCAAGGGCAAGACCTATGGGAGGTCGTTGGCGGGAGTGAAACTACGCCGCCAGAGGAGGATGCTAATGGCGCTTTGCGAAAATGGAAAATCAAAGCAGAAGCTCGGATGAAGAGGATCATCATCCACGGATTGCGACCGGGGTATAGAAGCTTCATCATTGCTGTACAAGGATGGCCTACCCAACCATCACTTGTAGAGTTCGAAAATTTGCTAGCCAGTCAATAA

Protein sequence

MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKAEARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ

Homology

[Close]

BLAST of Sed0004206 vs. NCBI nr
Match: GEW99543.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 63/112 (56.25%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------- 60
           +MSYLQGQDLWE+V GS+TT P  EDANG L+KWK++A                      
Sbjct: 32  LMSYLQGQDLWEIVNGSDTTSPLREDANGILKKWKVRASKALFILKTTVEDEIKTLCREI 91

Query: 61  ----------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENLLASQ 80
                     EARMKRIIIHGL+  YRSF+ AVQGWPTQPSL EFENLLASQ
Sbjct: 92  GELDPHSKIGEARMKRIIIHGLKQDYRSFVAAVQGWPTQPSLAEFENLLASQ 143

[Close]

BLAST of Sed0004206 vs. NCBI nr
Match: KAG6526559.1 (hypothetical protein ZIOFF_016550 [Zingiber officinale])

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 66/124 (53.23%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKA----------------------- 60
           M SYLQGQDLWEVVGGSE T P EDAN  LRKWKIKA                       
Sbjct: 1   MESYLQGQDLWEVVGGSEATQPTEDANSILRKWKIKAGKAMFALKITIEEEILEHIRDAK 60

Query: 61  ----------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFENL 80
                                 EAR+KRIIIHGLRP YR FI A+QGWPTQPSL+EFENL
Sbjct: 61  TPKEVKLICREISELDPSAPIGEARIKRIIIHGLRPEYRGFIAAIQGWPTQPSLLEFENL 120

[Close]

BLAST of Sed0004206 vs. NCBI nr
Match: XP_023749568.1 (uncharacterized protein LOC111897860 [Lactuca sativa])

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-23
Identity = 73/164 (44.51%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIK------------------------ 60
           M SYLQGQDLWEVVGGSETTPPEED NGALRKWKIK                        
Sbjct: 25  MKSYLQGQDLWEVVGGSETTPPEEDVNGALRKWKIKAGKAMFALKTTIEEEMLEHIRDEN 84

Query: 61  ------------------------------------------------------------ 80
                                                                       
Sbjct: 85  TPKEAWDTFVTLFSKKNDTRLQLLENELLSISQRDMTIAQYFHKVKSICREITELDPQSV 144

[Close]

BLAST of Sed0004206 vs. NCBI nr
Match: XP_023761520.1 (uncharacterized protein LOC111909959 [Lactuca sativa])

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-23
Identity = 73/164 (44.51%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIK------------------------ 60
           M SYLQGQDLWEVVGGSETTPPEED NGALRKWKIK                        
Sbjct: 26  MKSYLQGQDLWEVVGGSETTPPEEDVNGALRKWKIKAGKAMFALKTTIEEEMLEHIRDEN 85

Query: 61  ------------------------------------------------------------ 80
                                                                       
Sbjct: 86  TLKEAWDTFVMLFSKKNDTRLQLLENELLSISQRDMTIAQYFHKVKSICREITELDLQSV 145

[Close]

BLAST of Sed0004206 vs. NCBI nr
Match: KAE8668864.1 (tir-nbs resistance protein [Hibiscus syriacus])

HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 65/125 (52.00%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------- 60
           M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                      
Sbjct: 1   MESYLQGQDLWEVVGGGEVTQPVAEDANGILRKWKIKAGKAMFALKTTIEEEMLEHIRDA 60

Query: 61  -----------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFEN 80
                                  EAR+KRIIIHGLRP YR F+ AVQGWPTQPSL+EF+N
Sbjct: 61  KTPKEVKLICREISELDPTTAIGEARIKRIIIHGLRPEYRGFVAAVQGWPTQPSLIEFKN 120

[Close]

BLAST of Sed0004206 vs. ExPASy TrEMBL
Match: A0A6A2YC05 (Tir-nbs resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112285pilonHSYRG00586 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 65/125 (52.00%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------- 60
           M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                      
Sbjct: 1   MESYLQGQDLWEVVGGGEVTQPVAEDANGILRKWKIKAGKAMFALKTTIEEEMLEHIRDA 60

Query: 61  -----------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVEFEN 80
                                  EAR+KRIIIHGLRP YR F+ AVQGWPTQPSL+EF+N
Sbjct: 61  KTPKEVKLICREISELDPTTAIGEARIKRIIIHGLRPEYRGFVAAVQGWPTQPSLIEFKN 120

[Close]

BLAST of Sed0004206 vs. ExPASy TrEMBL
Match: A0A6A2X170 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117021pilonHSYRG00028 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 66/130 (50.77%), Postives = 69/130 (53.08%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETT-PPEEDANGALRKWKIKA---------------------- 60
           M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                      
Sbjct: 54  MESYLQGQDLWEVVGGGEVTQPATEDANGILRKWKIKAGKAMNDTKLQLLENELLSMAQR 113

Query: 61  ----------------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSL 80
                                       EAR+KRII+HGLRP YR F+ AVQGWPTQPSL
Sbjct: 114 DMAVAQYFHKVKSICREISELDPTAAIGEARIKRIIVHGLRPEYRGFVAAVQGWPTQPSL 173

[Close]

BLAST of Sed0004206 vs. ExPASy TrEMBL
Match: A0A6A3AIG6 (PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110458pilonHSYRG00590 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.3e-22
Identity = 65/128 (50.78%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETT-PPEEDANGALRKWKIKA---------------------- 60
           M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                      
Sbjct: 106 MESYLQGQDLWEVVGGGEVTQPATEDANGILRKWKIKAGKAMNDTKLQLLENELLSTAQR 165

Query: 61  ----------------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSL 78
                                       EAR+KRII+HGLRP YR F+ AVQGWPTQPSL
Sbjct: 166 DMAVAQYFHKVKSICREISELDPTAAIGEARIKRIIVHGLRPEYRGFVAAVQGWPTQPSL 225

[Close]

BLAST of Sed0004206 vs. ExPASy TrEMBL
Match: A0A6A2ZHK8 (Abscisic acid 8'-hydroxylase 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110893pilonHSYRG01099 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 65/130 (50.00%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPP-EEDANGALRKWKIKA---------------------- 60
           M SYLQGQDLWEVVGG E T P  EDANG LRKWKIKA                      
Sbjct: 329 MESYLQGQDLWEVVGGGEVTQPVTEDANGILRKWKIKAGKAMNDTKLQLLENELLSMAQR 388

Query: 61  ----------------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSL 80
                                       EAR+KRII+HGLRP YR F+ AVQGWPTQP L
Sbjct: 389 DMAIAQYFHKVKSICREISKLDPTAAIGEARIKRIIVHGLRPEYRGFVAAVQGWPTQPLL 448

[Close]

BLAST of Sed0004206 vs. ExPASy TrEMBL
Match: A0A6J5VBA9 (DUF4219 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS43346 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 60/128 (46.88%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 1   MMSYLQGQDLWEVVGGSETTPPEEDANGALRKWKIKA----------------------- 60
           M SYLQG+DLW+V+GG+E T P+ED NG LRKWKIKA                       
Sbjct: 25  MESYLQGEDLWDVIGGNEVTRPKEDTNGTLRKWKIKASKAMFALKTTIEEEMLEHIRNAK 84

Query: 61  --------------------------EARMKRIIIHGLRPGYRSFIIAVQGWPTQPSLVE 80
                                     ++R+KRIIIHGLRP Y  FI  VQGWPTQPSLVE
Sbjct: 85  TPKEAWDTFATLFSGRNGTNPTSAIVDSRIKRIIIHGLRPEYEDFIATVQGWPTQPSLVE 144

The following BLAST results are available for this feature:

BLAST of Sed0004206 vs. NCBI nr


Match Name	E-value	Identity	Description
GEW99543.1	1.1e-23	56.25	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerarii...	[more]
KAG6526559.1	1.4e-23	53.23	hypothetical protein ZIOFF_016550 [Zingiber officinale]	[more]
XP_023749568.1	3.1e-23	44.51	uncharacterized protein LOC111897860 [Lactuca sativa]	[more]
XP_023761520.1	3.1e-23	44.51	uncharacterized protein LOC111909959 [Lactuca sativa]	[more]
KAE8668864.1	3.5e-22	52.00	tir-nbs resistance protein [Hibiscus syriacus]	[more]

BLAST of Sed0004206 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A2YC05	1.7e-22	52.00	Tir-nbs resistance protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112285pi...	[more]
A0A6A2X170	2.2e-22	50.77	Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117021pilon...	[more]
A0A6A3AIG6	8.3e-22	50.78	PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110458pilonHSY...	[more]
A0A6A2ZHK8	1.4e-21	50.00	Abscisic acid 8'-hydroxylase 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig001108...	[more]
A0A6J5VBA9	1.4e-21	46.88	DUF4219 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS43...	[more]

BLAST of Sed0004206 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222:SF8	SUBFAMILY NOT NAMED	coord: 35..79
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 35..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004206.1	Sed0004206.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0016301	kinase activity