Sed0004084 (gene) Chayote v1

Overview


Name	Sed0004084
Type	gene
Organism	Sechium edule (Chayote v1)
Description	HIG1 domain-containing protein
Location	LG03: 2128868 .. 2129603 (+)
RNA-Seq Expression	Sed0004084
Synteny	Sed0004084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCATTAATATTAATATCAAAACAACTCACAAAAATGGAAGCTATTCAAACCTGGGTTTCTCAACACAAACTCACCAGCATTGGTTTAATTTCTCTCCTTTTTTTTTGTATCTCTTTTTTCACTTAATTTATTATGAGAAAAAAAAAAATAAATAAAATTTTCATCATGTAGGAGCATTATGGGCATCTGGGATGGGAGCATCACTGGCTTATACCCGATCAAGAACTCCCCTGAAACCAAGTCTTCGCCTTATCCATGCCAGGTATATCTATATCCATACATCCAAACACACATAAACAAAAATGATAGATGTTGTGTGTTTGGCTTTACAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGATAACAAAACCGCCACTGCCGCTGCCGCCACCGACCAATCTCAAGTTTCTGCTTCTGCCCTGGCGGCGAAGTAGGAACAATCACCCGGAGGAATTGGATGGATTTATATGTATAATTAAGCCTAGTTGGATCATTTTGTGTTAAATCAAATCAAGGATGCTAATTAGATTCCATCCTTTTTAATTAATGTGTCTGTAGCCTTAAATGGCATAGCTTTAAGCTCCATCACTCGCCTTTATCTTTCAAAATATTTTAATTCCTACTTTGCTTTGCTTCTCAAAATATATATATTTTTTGGAAAATAACTTTTCCATCACCTTTTTAGTAATTCAATTTAAC

mRNA sequence

TTGTCATTAATATTAATATCAAAACAACTCACAAAAATGGAAGCTATTCAAACCTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCATTATGGGCATCTGGGATGGGAGCATCACTGGCTTATACCCGATCAAGAACTCCCCTGAAACCAAGTCTTCGCCTTATCCATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGATAACAAAACCGCCACTGCCGCTGCCGCCACCGACCAATCTCAAGTTTCTGCTTCTGCCCTGGCGGCGAAGTAGGAACAATCACCCGGAGGAATTGGATGGATTTATATGTATAATTAAGCCTAGTTGGATCATTTTGTGTTAAATCAAATCAAGGATGCTAATTAGATTCCATCCTTTTTAATTAATGTGTCTGTAGCCTTAAATGGCATAGCTTTAAGCTCCATCACTCGCCTTTATCTTTCAAAATATTTTAATTCCTACTTTGCTTTGCTTCTCAAAATATATATATTTTTTGGAAAATAACTTTTCCATCACCTTTTTAGTAATTCAATTTAAC

Coding sequence (CDS)

ATGGAAGCTATTCAAACCTGGGTTTCTCAACACAAACTCACCAGCATTGGAGCATTATGGGCATCTGGGATGGGAGCATCACTGGCTTATACCCGATCAAGAACTCCCCTGAAACCAAGTCTTCGCCTTATCCATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGATAACAAAACCGCCACTGCCGCTGCCGCCACCGACCAATCTCAAGTTTCTGCTTCTGCCCTGGCGGCGAAGTAG

Protein sequence

MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKTATAAAATDQSQVSASALAAK

Homology

[Close]

BLAST of Sed0004084 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNK 71
          AAVYHYYDNK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Sed0004084 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 4.9e-28
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNK 71
          AAVYHYYDNK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Sed0004084 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSQHKLTSIGALWASG+GASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKTATAAAATDQSQV 84
          AAVYHYY+NK+A   +    S V
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAV 83

[Close]

BLAST of Sed0004084 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.8e-27
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVSQHKLTSIGALWASG+GASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKTATAAAATDQSQV 84
          AAVYHYY+NK+A   +    S V
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAV 83

[Close]

BLAST of Sed0004084 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 9.2e-27
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ W+S+HKLTSIGALWASG+GASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKTATAAAATDQSQVSASALAAK 92
          AAVYHYY+ +    A   D+++VSASA+  K
Sbjct: 61 AAVYHYYEKEKKGVA---DRTKVSASAVPGK 88

[Close]

BLAST of Sed0004084 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-29
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNK 71
          AAVYHYYDNK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Sed0004084 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNK 71
          AAVYHYYDNK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Sed0004084 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25
Identity = 59/70 (84.29%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVS+HKLTSIG LWASG+GASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYDNK 71
           AAVYHYY+ +
Sbjct: 98  AAVYHYYEKR 107

[Close]

BLAST of Sed0004084 vs. ExPASy TrEMBL
Match: A0A5N5F021 (HIG1 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_031816 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.2e-25
Identity = 60/74 (81.08%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLTSIG +WAS +GASLAY+R+RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSRARTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKTATA 75
          AA+YHYY++  A A
Sbjct: 61 AAIYHYYEDHEAAA 74

[Close]

BLAST of Sed0004084 vs. ExPASy TrEMBL
Match: A0A540LHQ1 (HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.1e-25
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MEAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLTSIG +WAS +GASLAY+++RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSKTRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKTATA 75
          AAVYHYY+   A A
Sbjct: 61 AAVYHYYEEHEAAA 74

[Close]

BLAST of Sed0004084 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 87.4 bits (215), Expect = 6.3e-18
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 2  EAIQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS HKL ++G LW SG+  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNKT 72
          AV  YYD+KT
Sbjct: 69 AVVEYYDHKT 78

[Close]

BLAST of Sed0004084 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.7e-16
Identity = 40/77 (51.95%), Postives = 56/77 (72.73%), Query Frame = 0


Query: 4  IQTWVSQHKLTSIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ +HKL ++G LW SG+  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNKTATAAAATDQ 81
            YYD+K    + ATD+
Sbjct: 71 VEYYDHK----SGATDR 83

The following BLAST results are available for this feature:

BLAST of Sed0004084 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052029.1	1.7e-28	95.71	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
XP_004138401.1	4.9e-28	94.29	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAG6578469.1	1.8e-27	83.13	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	1.8e-27	83.13	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7033273.1	9.2e-27	75.82	hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0004084 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0004084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEZ1	8.1e-29	95.71	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0K7T4	2.4e-28	94.29	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A7J7I509	1.9e-25	84.29	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A5N5F021	3.2e-25	81.08	HIG1 domain-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 ...	[more]
A0A540LHQ1	7.1e-25	81.08	HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 S...	[more]

BLAST of Sed0004084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	6.3e-18	58.57	Hypoxia-responsive family protein	[more]
AT5G27760.1	2.7e-16	51.95	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..72 e-value: 2.4E-6 score: 29.2
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..77
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 11..59 e-value: 1.3E-8 score: 34.9
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.84795
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004084.1	Sed0004084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome