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Sed0004006 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACAGCCAGAAAGAAACAGAAGATAAACCGATACTGCAAAAGCTCAAAAACCAGTGGATAAGCTTTTGAGAATTGGGCAGAGAGAAATGGCGGCAGCTTCAATTAGTTGCTTTGCTCTTCCTTCCAAGTTCACTCATCTTTCGCTTAATGCTTCTTCAACCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCTGTTTCTGCCTTCTCCAATGGTGATTTCTTGTTTTTCTCTTATCTTATTCTTTGATTTCTTGAAGATTTTCGTTATTTGTTTTGTCCATTTTCGAGTAGGGTGCCTTTCGATGAGCAAATCCCAGAAGCCATATCGTTACTCTGTGGTTTGCGAAGCGGCTCCTACCAAAAAGCCTGATTCTGCCGCCAAGAGAGCTCGCCAGGCTGAGAAAAGACGCCTTTACAATAAAGCCCGAAAGTCCGAAATCAAAACCCGGATTAAGAAGGTACCTAATTTTGGATGGGTTTTGGATTTTGTGTTATTTGAATCCTGTCGGAATTTGATGAAATCCCTTCTCGTGAAATTGGAAATGAATCTAATGTGTTTGTTGATAATGTGGAAATTTAATTTGGGGTTTTATGATTATAAACCCTGTCTAAGAATTGCTTTTATCTTTGATGGAGTTTTTGTATTTGAAATGATATTTATCTGTAACCAAACAACCCATTTGCTTTTGGCTCTGGAAAGTTGGATTTCTTGCTGATTTTCGTTTAGTTTGGTATGTGCTAAATTTATTTTTTTAAACCGAGAAATCGGAGCTATACCGGGGATAACCATATCTGTCTCTAGGCTAGGCGTATGTGTTAAATTTAAATATAAGTACTTCTTTACATTCTTAAGATTTAAGTGATATAGTTCATTACATTAGGTGTTGAAGATAAATGGCTGAAATGATTATCTGCATCTGACTGTTCCTGAGCTGGAACTAGATGAACTTTTTACCATCTGTTTAGAGCAAGTCATAAGATCTTCTTTGCAGCATTGATAGGATCCTTAAAAGTTGACCAATATCAAGAATCAAAAGGACAACGAGGAAAGAGGTTATAATGGTACTCTTAATTTGAAGAACACATAATACACCAAGATGGAGAAAGGTTGATGCAATCCATTCTTCTCGATGGTTGTATCGGCTAAGCTCCCAAAGATAAAATGTAGTTTTTCTTTTGATGAGCATCTTTCCAGATCATCAAGTAAAGATTGCTCAAAATGAGGGTCAGATATGCCTACAAGATTCTCCATCAGAGATTTAACAGTATAATTGTTGAAAGGATCAAGTGGGAAAGACAAATAGTTATCAATTTCACGAATTCTGGTCTGAGAGAGGAAATGAGAAAGATTGGCTCATTTAACTGTTTCTATATCATTTGGATTGCCATTGAGGTTCAAATTCCAAGCAGCAACGGTTGATGAGACCCAAACCTCTGTAATTGTGCTATTAGGTTGAATAGTTAGCGAAACAATCTAGGGAAAACCGTAGCAAAAGACTCCACAACTCAACTGTGAATCATTCCGAAAAGAATTAGAACTCCCATTACCAACCAATCATGGAGTGGTTCAATTAGTCAAAAAGGATCTTGGGGTACTTAAGGTGATGAGTTCAATCTATGGTGGTCACCTACCTAGAAATTAATTTACTACGAGTTTCCTTGGCATCCAAATGTTGTAGGGTCAGACGGTATGTCCTATGACATTAGTCAAGGTCCGCACAAGTTGGCCTAGACAGTCATGGATATCAAAAAAATAATAATAAAGAGCCTCTCTGTACGTGTGGACAAACACTAGATCCAAAGTGTTGCCAATTGTTCTGACTTGGATTCACTTTTGGGAATTCAATCTAGATCCCTAGTATGTAACTTACGCTTATTTGTTCCATAGACCATGATATAACAATTGCTTCGTCTCTGTATTGATTTATTAACAATTGAAATGGGAACATCTTTCCTCAACACCAAATGTAGTATGGTTAGAATCAGACACCGTAAGAATGATCAAGCATAAACTGGCTCATATAGTCACGAGTATACATATATATTTAACAACGATTTCAATCAATATTAGCTGTTGTACATGTCTCTTTCATCCAAATGTAGAAGTTTAAGATCAGTTCATAGCCAAATTGATGCAATATGGTACTGCCCCTGGCAATTATGTTTACATTACTTCTCTCTGCATGGCAAGAGAGGCAGTAGGAAGATGAGGTGGAGGGTGCTTCCCTTTCATAACTAAGACTAAGAGTACATCCTTTTTTTATTATGCTTCTAACTGATTAAACTTTTTTTTTTTATTGAATTTCTAAAGTGATGCTGCTTTTTGATGAATCTTCATTTAGTTTTACAACTTTTATCTTCTGTATCCTTGCTTTTGCGTATTATGAAGAAACAGAAAAGACAGTTTCTTTCCAGAACTAGTTAATTGTTTTCTTGTCTGCATAATTATAACCTCTCTCATACAATTCCAGGCTTTGGAAGCCATGGATGATCTAAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTTCTATTGAGAAGCTCATTGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAATACTGCAGCGCGTCGAAAATCTCGTCTTGCCAGACGAAAGAAAGCTGTAGAAATTCACCATGGCTGGTACACTCCTGCTTCACCTTTAGCTGCCTGATGCTACTCTACCCCTTTTGCTTATTGTTAATCGGATTTCTGAATGAATGAATGGGAAAATCATTCTATTCTTTTTTGACGTTAGATAATATGATAACTTTTTTTCCATTTTCCATCATTTGTTTCTTCTATTTTTGTATTTAGCTCGAACCTTCTTCTTTGGTAAAAAAATGGTTCCATTTTCTTAATCAGTTCGGGTAAAAAGGTTTGTTAAATTATAAATTTATTCTTCGAAGTAGTTAGAATTTCATTTGTTTAATCTTATAAATAG AAACAGCCAGAAAGAAACAGAAGATAAACCGATACTGCAAAAGCTCAAAAACCAGTGGATAAGCTTTTGAGAATTGGGCAGAGAGAAATGGCGGCAGCTTCAATTAGTTGCTTTGCTCTTCCTTCCAAGTTCACTCATCTTTCGCTTAATGCTTCTTCAACCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCTGTTTCTGCCTTCTCCAATGGGTGCCTTTCGATGAGCAAATCCCAGAAGCCATATCGTTACTCTGTGGTTTGCGAAGCGGCTCCTACCAAAAAGCCTGATTCTGCCGCCAAGAGAGCTCGCCAGGCTGAGAAAAGACGCCTTTACAATAAAGCCCGAAAGTCCGAAATCAAAACCCGGATTAAGAAGGCTTTGGAAGCCATGGATGATCTAAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTTCTATTGAGAAGCTCATTGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAATACTGCAGCGCGTCGAAAATCTCGTCTTGCCAGACGAAAGAAAGCTGTAGAAATTCACCATGGCTGGTACACTCCTGCTTCACCTTTAGCTGCCTGATGCTACTCTACCCCTTTTGCTTATTGTTAATCGGATTTCTGAATGAATGAATGGGAAAATCATTCTATTCTTTTTTGACGTTAGATAATATGATAACTTTTTTTCCATTTTCCATCATTTGTTTCTTCTATTTTTGTATTTAGCTCGAACCTTCTTCTTTGGTAAAAAAATGGTTCCATTTTCTTAATCAGTTCGGGTAAAAAGGTTTGTTAAATTATAAATTTATTCTTCGAAGTAGTTAGAATTTCATTTGTTTAATCTTATAAATAG ATGGCGGCAGCTTCAATTAGTTGCTTTGCTCTTCCTTCCAAGTTCACTCATCTTTCGCTTAATGCTTCTTCAACCCTCAAATCTCTCAGTTTCTCCTCCAACATTTCTGTTTCTGCCTTCTCCAATGGGTGCCTTTCGATGAGCAAATCCCAGAAGCCATATCGTTACTCTGTGGTTTGCGAAGCGGCTCCTACCAAAAAGCCTGATTCTGCCGCCAAGAGAGCTCGCCAGGCTGAGAAAAGACGCCTTTACAATAAAGCCCGAAAGTCCGAAATCAAAACCCGGATTAAGAAGGCTTTGGAAGCCATGGATGATCTAAAGAAGAAACCTGAAGCACAATCAGAGGAAGTTCTTTCTATTGAGAAGCTCATTGCAGAAGCATACTCGGTGATCGACAAAGCCGTGAAAGTGGGAACATTGCACCGAAATACTGCAGCGCGTCGAAAATCTCGTCTTGCCAGACGAAAGAAAGCTGTAGAAATTCACCATGGCTGGTACACTCCTGCTTCACCTTTAGCTGCCTGA MAAASISCFALPSKFTHLSLNASSTLKSLSFSSNISVSAFSNGCLSMSKSQKPYRYSVVCEAAPTKKPDSAAKRARQAEKRRLYNKARKSEIKTRIKKALEAMDDLKKKPEAQSEEVLSIEKLIAEAYSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPASPLAA Homology
BLAST of Sed0004006 vs. NCBI nr
Match: KAG6607892.1 (30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037419.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 272.3 bits (695), Expect = 2.9e-69 Identity = 156/184 (84.78%), Postives = 164/184 (89.13%), Query Frame = 0
BLAST of Sed0004006 vs. NCBI nr
Match: XP_022941386.1 (30S ribosomal protein S20, chloroplastic [Cucurbita moschata]) HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68 Identity = 155/184 (84.24%), Postives = 163/184 (88.59%), Query Frame = 0
BLAST of Sed0004006 vs. NCBI nr
Match: XP_022981947.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68 Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 0
BLAST of Sed0004006 vs. NCBI nr
Match: XP_022976587.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita maxima] >KAG6591939.1 30S ribosomal protein S20, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024812.1 30S ribosomal protein S20, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 267.7 bits (683), Expect = 7.0e-68 Identity = 153/183 (83.61%), Postives = 165/183 (90.16%), Query Frame = 0
BLAST of Sed0004006 vs. NCBI nr
Match: XP_022935732.1 (30S ribosomal protein S20, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 267.7 bits (683), Expect = 7.0e-68 Identity = 153/183 (83.61%), Postives = 165/183 (90.16%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2) HSP 1 Score: 177.2 bits (448), Expect = 1.6e-43 Identity = 106/173 (61.27%), Postives = 128/173 (73.99%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42 Identity = 106/176 (60.23%), Postives = 134/176 (76.14%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy Swiss-Prot
Match: B0C2C8 (30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsT PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 6.9e-10 Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy Swiss-Prot
Match: P80380 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=rpsT PE=1 SV=3) HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy Swiss-Prot
Match: P62661 (30S ribosomal protein S20 OS=Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) OX=262724 GN=rpsT PE=1 SV=2) HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09 Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy TrEMBL
Match: A0A6J1FKZ1 (30S ribosomal protein S20, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446691 PE=3 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 5.2e-69 Identity = 155/184 (84.24%), Postives = 163/184 (88.59%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy TrEMBL
Match: A0A6J1IVC5 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480940 PE=3 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68 Identity = 152/184 (82.61%), Postives = 164/184 (89.13%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 3.4e-68 Identity = 153/183 (83.61%), Postives = 165/183 (90.16%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 3.4e-68 Identity = 153/183 (83.61%), Postives = 165/183 (90.16%), Query Frame = 0
BLAST of Sed0004006 vs. ExPASy TrEMBL
Match: A0A6J1CG14 (30S ribosomal protein S20, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010468 PE=3 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 5.8e-68 Identity = 151/184 (82.07%), Postives = 164/184 (89.13%), Query Frame = 0
BLAST of Sed0004006 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative ) HSP 1 Score: 174.5 bits (441), Expect = 7.5e-44 Identity = 106/176 (60.23%), Postives = 134/176 (76.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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