Sed0004004 (gene) Chayote v1

Overview


Name	Sed0004004
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein L37
Location	LG05: 28603386 .. 28605618 (+)
RNA-Seq Expression	Sed0004004
Synteny	Sed0004004

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTATGAAAGTTTGGAGGTAGGTCAAAATTATACGGGTCGAAATTTCCTCCAAACCCTAAACCATCCCTATATAAACCCCGCCGCTTACAGATAAGTTCTCTTTGGACGGAAGAGGAACTCAAAGGCTTGATCGTCAAATTCGATTCGATGGTAATGGCGAAACTTGCTTTTGCATTTCCCCAATCTCTTCTCTTTGTTTATGAACTTCATTGAATTCAAAATTTGAAGCGCATTAATCCAATTGTTCGTTGTGAATCGATAAATTTCAGGGCAAGGGAACGGGAAGTTTCGGTAAGAGAAGGAACAAGACCCACACTCTCTGTGTCAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGCCGATGCTCCGCCTGCGCTTTTCCGGCTGCCCGTAAGCGAACATGTAAGAGAACCTAATCAGTTTGTAATTTCTTGTTGGGTTTTACATCGTTGTACAATTGAATCTGGTTTGTTTACTGGGGTTATTTAGTTTCATCGATTAGTAGTGACAATGTTTAGATCCTCCGTTATTGACCCAGATAGGAGTTGATTCTTATGTGGGTAATAATTTGTTCAAGTCAATTTGTTCAGTGTAAAAGGACCACCTTAGCCTCTACAAGACTCTAGAGAGCTGTTTGGATGAGGAGTTAGTTTGTTGGGTTATTTTGAATCGGTAGAATTGCGAGGGTTTTGTAATAGTTCGTACGTAGATTTTTATGGAATAGTTATTTTGAGTAGTTAAAAATGAATGCATAGAAATAACTGTTTAAAATTTTTAAGATGAGTTATTTTGAGCAATTAGAAATAAATGATTAAAAATGATTTATTAGAAATGAGAAGTTATTTTGAGTATTTAGAAATGAATGATTAGATATTAGTAGTTAGAAATGTGGAGTTGTTTTGAGAAGCTAGAATTAATAGCTCGTTTGGATCTAGTTTTTCCCGTAGATGATAAATACTAATTTCTAAATGTCGGTTCAAGGTCGGTTGAAGACTTGGGCTTTAAAGGTATGCTCCCTTCAAGGTTCTAGGTTCGAGACTCACCTATGATATTACTCCTTTGATGTCTCCTGGTGCCTGGCCTAGGGACGGGCGTGGCTACTCTTGTTTCAAAAAAAAACTAATTTCTAAATCCTTCATAAATTCAACAAACAAACACCCCGTAGGCTCAATGTGGGCGCCTTGCCGATAGACTTGATGGCATGTCACGCCTTTCATGAAGCCCCTCAATGTGCCTTATGGCTTTCTTATTTGTTTTTAGTTTTTAGAAATCGAAGTAAAATGTTGATATTTTACTCATTTCTATTTTTTAAAAAAATTTCAACTTTAATCAACACTACTTCAAAGTTTAAGAAAATTATTTTAATAAAATTTCTAATCTAATCGTTGGCCCTAATCGCCAATTCACTTCTCTTTTCTCTCTAATTATCTTCAATGAAGAAGTGGATGATGAAGAATATGTATTTAGCAACAATAAATTTAATCTGATTTTGATTTTTGTTTGAGATTAATATTTAATGTTTCATGTTTTTTATGGGTTGACCATGTGAATAGTTCTATATTTAAAGAGATTAATATATATGTTTCGTGATATGTGTGTGTGTGTGTATATATATATATTGTGCATGGTGCTCCTTGGAATAAAAAGCCTCGTGCCTCACTCTTTGGGGACCCCTTTGTGCACCTTGCGCCAAATTAGTTTTATTTTTGGGTCTTCAATTTTGGTTTAGTTGTTTGTTTGTCTTATTGGTGGTTTTGGATTTAGATAATTGGAGCCTGAAGGCAATCAGGAGGAAGACGACTGGAACGGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTTAAGAGTGGCTTCAGAGAAGGTAATAATCTGCGTTATATATTTCTCCCTTTTGTAGTGTATTATTGTGGCATTTTGTGATTTTAATTACATTTGGATTCTGTGATTAGGTACCCAAGCAGCACCAAGGATCAAAGGAGCAGCAGCATCAGCCTAAAGCATTGAAGGTTAATTGTGCTACAACTTTGGTACTCTATAGTAGCTTCTAGGAGGATTCTATCATTTTTGGACCAGAATTTATATGAATTTTGTTTGATGATGTAATTGCCTTCTATACTGAAGCTCATTTTTATTTCTTGCTATTTTGTTTATGTAATTTCTCATGATTGCTTTCAGACTACTTTCCCTTTTGGTTAATCAATGAGTGAGTTATTTACTTCTAA

mRNA sequence

CGAGTATGAAAGTTTGGAGGTAGGTCAAAATTATACGGGTCGAAATTTCCTCCAAACCCTAAACCATCCCTATATAAACCCCGCCGCTTACAGATAAGTTCTCTTTGGACGGAAGAGGAACTCAAAGGCTTGATCGTCAAATTCGATTCGATGGGCAAGGGAACGGGAAGTTTCGGTAAGAGAAGGAACAAGACCCACACTCTCTGTGTCAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGCCGATGCTCCGCCTGCGCTTTTCCGGCTGCCCGTAAGCGAACATATAATTGGAGCCTGAAGGCAATCAGGAGGAAGACGACTGGAACGGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTTAAGAGTGGCTTCAGAGAAGGTACCCAAGCAGCACCAAGGATCAAAGGAGCAGCAGCATCAGCCTAAAGCATTGAAGGTTAATTGTGCTACAACTTTGGTACTCTATAGTAGCTTCTAGGAGGATTCTATCATTTTTGGACCAGAATTTATATGAATTTTGTTTGATGATGTAATTGCCTTCTATACTGAAGCTCATTTTTATTTCTTGCTATTTTGTTTATGTAATTTCTCATGATTGCTTTCAGACTACTTTCCCTTTTGGTTAATCAATGAGTGAGTTATTTACTTCTAA

Coding sequence (CDS)

ATGGGCAAGGGAACGGGAAGTTTCGGTAAGAGAAGGAACAAGACCCACACTCTCTGTGTCAGGTGTGGCCGCCGCAGCTTCCACCTGCAGAAGAGCCGATGCTCCGCCTGCGCTTTTCCGGCTGCCCGTAAGCGAACATATAATTGGAGCCTGAAGGCAATCAGGAGGAAGACGACTGGAACGGGGCGGATGAGATACATGCGCCATGTTCCACGCAGATTTAAGAGTGGCTTCAGAGAAGGTACCCAAGCAGCACCAAGGATCAAAGGAGCAGCAGCATCAGCCTAA

Protein sequence

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTGTGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA

Homology

[Close]

BLAST of Sed0004004 vs. NCBI nr
Match: XP_022955411.1 (60S ribosomal protein L37-3 [Cucurbita moschata] >XP_022979289.1 60S ribosomal protein L37-3 [Cucurbita maxima] >XP_023526471.1 60S ribosomal protein L37-3 [Cucurbita pepo subsp. pepo] >KAG6581895.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018329.1 60S ribosomal protein L37-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 95

[Close]

BLAST of Sed0004004 vs. NCBI nr
Match: XP_031252760.1 (60S ribosomal protein L37-3 [Pistacia vera] >KAF3450755.1 hypothetical protein FNV43_RR06844 [Rhamnella rubrinervis])

HSP 1 Score: 186.8 bits (473), Expect = 8.6e-44
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTQAAPRNKGAAASA 95

[Close]

BLAST of Sed0004004 vs. NCBI nr
Match: XP_038717722.1 (60S ribosomal protein L37-3 [Tripterygium wilfordii] >KAF5739145.1 60S ribosomal protein L37-3 [Tripterygium wilfordii])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+RH+PRRFKSGFREGTQAAPR KGAAA+A
Sbjct: 61 TGRMRYLRHLPRRFKSGFREGTQAAPRSKGAAATA 95

[Close]

BLAST of Sed0004004 vs. NCBI nr
Match: XP_022150495.1 (60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal protein L37-3-like [Cucurbita moschata] >XP_022998691.1 60S ribosomal protein L37-3-like [Cucurbita maxima] >XP_023523625.1 60S ribosomal protein L37-3-like [Cucurbita pepo subsp. pepo] >KAG6606766.1 60S ribosomal protein L37-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]

BLAST of Sed0004004 vs. NCBI nr
Match: XP_019448155.1 (PREDICTED: 60S ribosomal protein L37-3 [Lupinus angustifolius] >OIW09097.1 hypothetical protein TanjilG_16324 [Lupinus angustifolius])

HSP 1 Score: 184.5 bits (467), Expect = 4.3e-43
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+RHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYLRHVPRRFKSGFREGTEAAPRKKGAAASA 95

[Close]

BLAST of Sed0004004 vs. ExPASy Swiss-Prot
Match: Q8LEM8 (60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.9e-42
Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Sed0004004 vs. ExPASy Swiss-Prot
Match: Q43292 (60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2)

HSP 1 Score: 170.6 bits (431), Expect = 8.4e-42
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Sed0004004 vs. ExPASy Swiss-Prot
Match: Q8LFH7 (60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-41
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

[Close]

BLAST of Sed0004004 vs. ExPASy Swiss-Prot
Match: Q9VXX8 (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37a PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-29
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          M KGT SFGKR NKTHTLC RCGR S+H+QKS C+ C +PAA+ R+YNWS+KA RRKTTG
Sbjct: 1  MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPR 88
          TGRM++++ V RRF++GFREGTQA P+
Sbjct: 61 TGRMQHLKVVRRRFRNGFREGTQAKPK 87

[Close]

BLAST of Sed0004004 vs. ExPASy Swiss-Prot
Match: Q90YT1 (60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 4.8e-29
Identity = 64/95 (67.37%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C +PA RKR YNWS KA RR TTG
Sbjct: 1  MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMR+M+ V RRF++GFREGT   PR    AAS+
Sbjct: 61 TGRMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95

[Close]

BLAST of Sed0004004 vs. ExPASy TrEMBL
Match: A0A6J1IW96 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111479057 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 95

[Close]

BLAST of Sed0004004 vs. ExPASy TrEMBL
Match: A0A6J1GTP8 (Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111457445 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGTQAAPR KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRSKGAAASA 95

[Close]

BLAST of Sed0004004 vs. ExPASy TrEMBL
Match: A0A6J1KAY5 (Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]

BLAST of Sed0004004 vs. ExPASy TrEMBL
Match: A0A7J7CYG1 (Ribosomal protein L37 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00345 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 90/95 (94.74%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+RH+PRRFKSGFREGTQAAPR KGAAA+A
Sbjct: 61 TGRMRYLRHLPRRFKSGFREGTQAAPRSKGAAATA 95

[Close]

BLAST of Sed0004004 vs. ExPASy TrEMBL
Match: A0A6J1D8M5 (Ribosomal protein L37 OS=Momordica charantia OX=3673 GN=LOC111018628 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKR YNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRYMRHVPRRFKSGFREGT+AAPR KGAAASA
Sbjct: 61 TGRMRYMRHVPRRFKSGFREGTEAAPRSKGAAASA 95

[Close]

BLAST of Sed0004004 vs. TAIR 10
Match: AT3G16080.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.0e-43
Identity = 82/95 (86.32%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR K +A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95

[Close]

BLAST of Sed0004004 vs. TAIR 10
Match: AT1G52300.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 170.6 bits (431), Expect = 5.9e-43
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+R+VPRRFK+GFREGT+A PR KG A+SA
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95

[Close]

BLAST of Sed0004004 vs. TAIR 10
Match: AT1G15250.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.0e-42
Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1  MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRTYNWSLKAIRRKTTG 60
          MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRCSACA+PAARKRTYNWS+KAIRRKTTG
Sbjct: 1  MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60

Query: 61 TGRMRYMRHVPRRFKSGFREGTQAAPRIKGAAASA 96
          TGRMRY+R+VPRRFK+ FREGTQA PR K AA+S+
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95

The following BLAST results are available for this feature:

BLAST of Sed0004004 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955411.1	3.0e-44	97.89	60S ribosomal protein L37-3 [Cucurbita moschata] >XP_022979289.1 60S ribosomal p...	[more]
XP_031252760.1	8.6e-44	96.84	60S ribosomal protein L37-3 [Pistacia vera] >KAF3450755.1 hypothetical protein F...	[more]
XP_038717722.1	3.3e-43	94.74	60S ribosomal protein L37-3 [Tripterygium wilfordii] >KAF5739145.1 60S ribosomal...	[more]
XP_022150495.1	3.3e-43	95.79	60S ribosomal protein L37-3 [Momordica charantia] >XP_022948866.1 60S ribosomal ...	[more]
XP_019448155.1	4.3e-43	94.74	PREDICTED: 60S ribosomal protein L37-3 [Lupinus angustifolius] >OIW09097.1 hypot...	[more]

BLAST of Sed0004004 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LEM8	2.9e-42	86.32	60S ribosomal protein L37-3 OS=Arabidopsis thaliana OX=3702 GN=RPL37C PE=3 SV=1	[more]
Q43292	8.4e-42	86.32	60S ribosomal protein L37-2 OS=Arabidopsis thaliana OX=3702 GN=RPL37B PE=3 SV=2	[more]
Q8LFH7	1.4e-41	86.32	60S ribosomal protein L37-1 OS=Arabidopsis thaliana OX=3702 GN=RPL37A PE=3 SV=1	[more]
Q9VXX8	2.1e-29	68.97	Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster OX=7227 GN=RpL37...	[more]
Q90YT1	4.8e-29	67.37	60S ribosomal protein L37 OS=Ictalurus punctatus OX=7998 GN=rpl37 PE=3 SV=3	[more]

BLAST of Sed0004004 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IW96	1.4e-44	97.89	Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111479057 PE=3 SV=1	[more]
A0A6J1GTP8	1.4e-44	97.89	Ribosomal protein L37 OS=Cucurbita moschata OX=3662 GN=LOC111457445 PE=3 SV=1	[more]
A0A6J1KAY5	1.6e-43	95.79	Ribosomal protein L37 OS=Cucurbita maxima OX=3661 GN=LOC111493277 PE=3 SV=1	[more]
A0A7J7CYG1	1.6e-43	94.74	Ribosomal protein L37 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW12G00345 PE...	[more]
A0A6J1D8M5	1.6e-43	95.79	Ribosomal protein L37 OS=Momordica charantia OX=3673 GN=LOC111018628 PE=3 SV=1	[more]

BLAST of Sed0004004 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16080.1	2.0e-43	86.32	Zinc-binding ribosomal protein family protein	[more]
AT1G52300.1	5.9e-43	86.32	Zinc-binding ribosomal protein family protein	[more]
AT1G15250.1	1.0e-42	86.32	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001569	Ribosomal protein L37e	PFAM	PF01907	Ribosomal_L37e	coord: 3..53 e-value: 2.1E-25 score: 88.6
IPR001569	Ribosomal protein L37e	HAMAP	MF_00547	Ribosomal_L37e	coord: 2..53 score: 16.022638
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	2.20.25.30		coord: 1..87 e-value: 4.2E-45 score: 153.9
None	No IPR available	PANTHER	PTHR10768	60S RIBOSOMAL PROTEIN L37	coord: 1..95
None	No IPR available	PANTHER	PTHR10768:SF28	RIBOSOMAL PROTEIN L37	coord: 1..95
IPR018267	Ribosomal protein L37e, conserved site	PROSITE	PS01077	RIBOSOMAL_L37E	coord: 4..23
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0004004.1	Sed0004004.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome