Sed0003979 (gene) Chayote v1

Overview


Name	Sed0003979
Type	gene
Organism	Sechium edule (Chayote v1)
Description	thylakoid lumenal 16.5 kDa protein, chloroplastic
Location	LG11: 1107654 .. 1111877 (-)
RNA-Seq Expression	Sed0003979
Synteny	Sed0003979

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCATCCATTCTTTCAACAGCAAACTCTTTCCATTCATCCAATCCTTTTTCTACTTCTTCTTCTTCATCACCATTGCTGAAATCAAGATTTGGATGCCTATATTACCATAATAACCCTAAGCCACTGGTAATCTGCAAAATAAACAATGACCCACCATACAAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATATCCATCATTTCCAGTTTCATTTTGGTGGGTCTAGGGTTTTCAGAAGCAAATGCTGCAATTCTTGAAGCTGATGATGATGAGGAGCTTTTGGAAAAGGTGAAGGCTGATAGAAAGAAGTGGCTTGAAAGACAAGGGGTTATCAGTTCTGCTATTAAAGAAACAGGTTTGTTTTGTATGCATTCTAGGTGTTTGTGTTTAGTTCTCTGTGAACTTTGAACTTGGATGTTTGATTTTGTGCTGGATTTTTTCTTGTTTTTGTTGGTTTTTTTAAGTTCCAAACAAATAGAAAAAGATATGAAATGAAGAGATATGCTATTGAGCATTAAGATCAACTATTTATACAACTGATATACAAGTGATTTTGCATAAAAAACCTACTACAAAAAGCATAAAATATCTTGCATAAAAATAGCATAAAGAATAGGACTTGATCTAAACTAATTTAGACTATTTTAACTAATTTATTTTTGACTCATTCTGCTGGAATGTTGCAACATTTTAAGGCATGATTCAACACTCCTCCTTAACTTTGAGGCTGCATATTCCAAGTTTTTGTCTGAGAGCTATCTTGCTTTAGGAAGTGGTTTTTTGTTAGAAAATCAGCAAGTTGGTTTTCTATGTTGCAGTACATCAACTGTACTTCTCCTTGTTGTATTCTGCTTCCGTCGTTGATTGTGCTATGACTTCTTGTTTTTTTGAACACCAAGAAAAAATTCAAGAACCAAAGTTGAAACAATAACCAGAAGTGTTTCGCATATCACCATTGCTTCCTGCCCAATCACTATCAGAAAAAGCATGAAGATGGAAATTCTTGACCTGCCTGAAAATCACTCCATAGTCTACTGTGCCTTTAACATATATGAGGATTTTTTTTGCTGCTTGAAAGTGAATTTCACTTGCACAATGCATATATCTTGACAGTAAACTCACAACATGCAGAATGTCTGGTCTAGTTGCAATCAAATACATCAAACAGTCTATTAAGCTTCTGTACAACCTTTCATCGACTTTTTAAGGTCCATCTTCTTTGTAAATGGGGTTTCGTTGTTGTCTGAGTTCATTTGAATTCTTGTGTGTTCACTGTTCATTTCATTTTGATTTGGTAAATGATTTTGATAACTATTTTGTATTTTGCTTTTGAAAATTAAGCCTATAACAAGTACTCCAACCTATATTTTTAAAAACTAAACCAAAATTTGATTTGAAAACTAAAAAAAACTTTTGTTTTGAATTTTTGGAATTTGGTTAGGATTAAAATATTTTCTTAAGGAGGATAAACTACAAATTTGAGTGAAAACAAGTTTAAATTTTTTAAAAAAGAAACATCGATGGTTATCAAATCGATCACGATAATTGCATTTTTTTTTCGTGGTTTTGGAACAATGGAAATATAAGAGCGCTTAACAGTTCATAGAATACAATTCTTTTTTGTGCCCGTGATTATTGAGATTGTTATGTGTAGAGTAGAGGTGGTTTATATCTTTTGTACGGACCAGAGCACTTCGACTATTCTCATGAAACATAGTATCTAACCTACAACATTTTAATGTTAAGGTAACCAGTAAAAAATGATTTCCTTGGTAGGTGACCTTCATAGACCGACCCCTTAACCTCTTGAATTTCCCAACTCCTCTTTGATCACTAAGCCAACTTAGTACTATTGATTTTGAGATAAAGTTATGAAAAACACAATGGAAAACAAGAAAAGCAAACAATGTGTATCCAATTTCAATATACTTTCAGTGAATCTAGCACTCCAAGCAGGAGAAAAGCGAATTCAATACTCAAATGAGCTGATTCGGACATCCAAATATTGTAGGCTTAGACGATATGTCCCGTTAGAATAGTCGAAGTGAGAGTTAAGCTGATCTGGACACTCACAGAATTCCTTAAAGAAGTTAAATATGGTCTTGGTTTCTGAAATCATGAAGCTTAATTCTTCATGTGAGTGGATTACAAGTGTTGTTACAATCAATCATTGAGTTCATTATAAGCTAGCAGAGTTAAGTAATGAGAAAACCTCTAACCAGTGTTTTAAAAAGCGCAGGGCGCACTCAGGCGCAATGGCCCTCTGGAGCTTGAGGCACAAGGCGCACCAAAAGACGAGGTTTTTTTTACTTAAGGCGCACTATATAAAAAAACACAAAAAATTTATATATATGTGTGTATTCACAATAAAAACACTTTACATGGACATAAATGAAGTTTTAACCAAGAATAATATATAAAACATACATAATATTAAACTATCAACCTTCATGCGCTTCGAATGACCTAGTACGGGGATCTGAAATACAAAAAACGCAAAGGAAAATTAAAAAGCCCACGAGGCGCGCGCCTTTAAGCGTCCAGGGCTTCACGTAAGGCGCCATAAGGTGGGACTTGAGCCCAGGCGCGCCTTTTAAAACACTGCCTCTAACACAAATTGAAACCTTACCAAAATGATTGGGATTTTTGCAGTCTACCTCCAGGAAGTTGAAGCTGAGCAAAGTTGGTCAAGCCATTGACAATGAGGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCTGAACGCCAATTTAGCCTTCTCTAAGGTTTGTAAAATATGTATAACAAATCAGGGCCGTTTATTTTACTTTGGCAAGTTCTAATCTGTAGCTAGAATGACAGAGGAACCTGACTTGATGTGTTATATTTACTATACAAATTTAAACCAACCATCTATTATGAGTTGACTTAATTGTCAAGAACACTTTTAAGGAACTAAGAAATTATATGTTCAATCCACAATGACCATCTATCTATGAACTAATTTCCTACTAGTTTTCTTGACAATCAAATGTTGTGTGCCAGGCGGTTTGTCCCCCGATAATAATCAAGGTGCTCGTAAGCTGATTAAGAGACTCACAACTATATAACAAAATAAATAAATAAATTATCAAGCACATCTCAGATATATGATGGCATGGATTCTGTATCACAATACATGGAAAAACATGATTTTGCATGAATTTTTCAATGCGGTACATTTTGTGAACATGATGCAAATTGTCAAAAACTTTGTAATAAATGTTATAGTTTCTTTTTCTTTAAGTACACCAATCAAGCTCTATGTAGCACATCATATACTGTTCATGTTTACAAATGAAATGGGACTGAGACCATTCTCTTAAAAAACAATGCTTTAGTCTAAGATGTTCAAATTTCAAATTTTGAAGACAAAATTGAAAACAAGCATAAAGTTCAGGGAGAAACATATTTTCTAGCCTTAATGGAACTCGCTCATCTTTCTAGCGAGCAACCCTTTTGATGCGACAAGACGAATGCTACATATCACAACTTAAATTGTTTATCAGGTTTATGAATAGTTAATGATCCTTTGATGAATTTCTGACTTTTTGTGTGACTTCTTGAGCAGCTGAGCTCAAGTTCTGAAGAGAAATCTGAGGCAGATGCATTCAAATCCTCTCTAGTTTCGTTAATCTCATCAGGTAGGTTTTATTTTTTTTAGTTCTTTGAGAAATTCGAATTCATGACCTGGTCATAGGCACACACACTTATATCGTTGAACTATTGTTTTTGTTGTCACCTCTGTTGAGAATTTGGCAAAATATTAACAAAGTTTGTCCCACATGGAAAGTTTTGGCAAAATATTGGGAAAAATGTCCCACATTGGAAAGATGCAAGAATATGGTGTGCTCCACTCACTATAAAAAGCAAATGGGTTTGGATTCAAGACATCCCAATTAAAATCACTTTAAGCATGTGTACTAACTCTTTTGTATACGAAAGTTGAGCAAAAGTTGCTATTAGTATAGCTTTGAAGAGTAACTTTTGTAATTTGGGTCTGGAAGAGAATTCTTTGTGATTGTAACAATTTTTCACATAGTAGAAATTCTTTCTTCCCGTGATTTTTTTCTCCAGTTTGGAGTTTTCCACGTAAATTCTTGTGTTGTTTCGGAAGGTTTTTCCCCAACGATCTCTATCGTTTAGGCTATCTGCTAAGAAATAATGCAGCAGCC

mRNA sequence

ATGGCAGCATCCATTCTTTCAACAGCAAACTCTTTCCATTCATCCAATCCTTTTTCTACTTCTTCTTCTTCATCACCATTGCTGAAATCAAGATTTGGATGCCTATATTACCATAATAACCCTAAGCCACTGGTAATCTGCAAAATAAACAATGACCCACCATACAAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATATCCATCATTTCCAGTTTCATTTTGGTGGGTCTAGGGTTTTCAGAAGCAAATGCTGCAATTCTTGAAGCTGATGATGATGAGGAGCTTTTGGAAAAGGTGAAGGCTGATAGAAAGAAGTGGCTTGAAAGACAAGGGGTTATCAGTTCTGCTATTAAAGAAACAGGTTTGAAGTTGAAGCTGAGCAAAGTTGGTCAAGCCATTGACAATGAGGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCTGAACGCCAATTTAGCCTTCTCTAAGCTGAGCTCAAGTTCTGAAGAGAAATCTGAGGCAGATGCATTCAAATCCTCTCTAGTTTCGTTAATCTCATCAGGTAGGTTTTATTTTTTTTAGTTCTTTGAGAAATTCGAATTCATGACCTGGTCATAGGCACACACACTTATATCGTTGAACTATTGTTTTTGTTGTCACCTCTGTTGAGAATTTGGCAAAATATTAACAAAGTTTGTCCCACATGGAAAGTTTTGGCAAAATATTGGGAAAAATGTCCCACATTGGAAAGATGCAAGAATATGGTGTGCTCCACTCACTATAAAAAGCAAATGGGTTTGGATTCAAGACATCCCAATTAAAATCACTTTAAGCATGTGTACTAACTCTTTTGTATACGAAAGTTGAGCAAAAGTTGCTATTAGTATAGCTTTGAAGAGTAACTTTTGTAATTTGGGTCTGGAAGAGAATTCTTTGTGATTGTAACAATTTTTCACATAGTAGAAATTCTTTCTTCCCGTGATTTTTTTCTCCAGTTTGGAGTTTTCCACGTAAATTCTTGTGTTGTTTCGGAAGGTTTTTCCCCAACGATCTCTATCGTTTAGGCTATCTGCTAAGAAATAATGCAGCAGCC

Coding sequence (CDS)

ATGGCAGCATCCATTCTTTCAACAGCAAACTCTTTCCATTCATCCAATCCTTTTTCTACTTCTTCTTCTTCATCACCATTGCTGAAATCAAGATTTGGATGCCTATATTACCATAATAACCCTAAGCCACTGGTAATCTGCAAAATAAACAATGACCCACCATACAAAATCCCAACTTTAACCAAGAGAAGCCTCTCAATATCCATCATTTCCAGTTTCATTTTGGTGGGTCTAGGGTTTTCAGAAGCAAATGCTGCAATTCTTGAAGCTGATGATGATGAGGAGCTTTTGGAAAAGGTGAAGGCTGATAGAAAGAAGTGGCTTGAAAGACAAGGGGTTATCAGTTCTGCTATTAAAGAAACAGGTTTGAAGTTGAAGCTGAGCAAAGTTGGTCAAGCCATTGACAATGAGGACTTCTCAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTTCTGAACGCCAATTTAGCCTTCTCTAAGCTGAGCTCAAGTTCTGAAGAGAAATCTGAGGCAGATGCATTCAAATCCTCTCTAGTTTCGTTAATCTCATCAGGTAGGTTTTATTTTTTTTAG

Protein sequence

MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTLTKRSLSISIISSFILVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGVISSAIKETGLKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEKSEADAFKSSLVSLISSGRFYFF

Homology

[Close]

BLAST of Sed0003979 vs. NCBI nr
Match: XP_008457444.1 (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA0063500.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa] >TYJ97826.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 6.9e-64
Identity = 152/198 (76.77%), Postives = 163/198 (82.32%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYK 60
           MA S LSTAN+FHSS P S+SSSSS    PLL+SRFGCLY HNN K LVICK ++DPP K
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGVI 120
           IP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSE 180
           SSA KE G    L  KLSKVGQAID+ DF+TASSVLGGSSDADWV NANLAF+KLSSS E
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEADAFKSSLVSLISS 189
           EKSE DAF SSL SLISS
Sbjct: 181 EKSEVDAFNSSLASLISS 198

[Close]

BLAST of Sed0003979 vs. NCBI nr
Match: XP_038889145.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-63
Identity = 154/201 (76.62%), Postives = 162/201 (80.60%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS-------PLLKSRFGCLYYHNNPKPLVICKINNDP 60
           MA S LSTAN+FHSS P S+SSSSS       PLL+SRFGCL+ HNN K LVICK  NDP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSSPPLLRSRFGCLHCHNNTKRLVICKGINDP 60

Query: 61  PYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQ 120
           P +IP LTKRSLSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LERQ
Sbjct: 61  PSQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120

Query: 121 GVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSS 180
           GVISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGSSDADWV NANLAF+KLSS
Sbjct: 121 GVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANLAFNKLSS 180

Query: 181 SSEEKSEADAFKSSLVSLISS 189
           S EEKSE DAF SSL SLISS
Sbjct: 181 SPEEKSEVDAFNSSLASLISS 201

[Close]

BLAST of Sed0003979 vs. NCBI nr
Match: XP_022946074.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-63
Identity = 153/200 (76.50%), Postives = 162/200 (81.00%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS------PLLKSRFGCLYYHNNPKPLVICKINNDPP 60
           MA S LSTAN+FHSS P S+SSSSS      PLL+SRF CL Y NN + LVICK NNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  YKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQG 120
            +IPTLTKRSLSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSS 180
           VISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 SEEKSEADAFKSSLVSLISS 189
            EEKSE DAF SSL SLISS
Sbjct: 181 PEEKSEVDAFNSSLASLISS 200

[Close]

BLAST of Sed0003979 vs. NCBI nr
Match: KAG7030378.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 250.8 bits (639), Expect = 9.9e-63
Identity = 152/199 (76.38%), Postives = 161/199 (80.90%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNP-----FSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPY 60
           MA S LSTAN+FHSS P      S+SSSSSPLL+SRF CL   NN + LVICK NNDPP 
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60

Query: 61  KIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGV 120
           +IPTLTKRSLSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LERQGV
Sbjct: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSS 180
           ISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS 
Sbjct: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180

Query: 181 EEKSEADAFKSSLVSLISS 189
           EEKSE DAF SSL SLISS
Sbjct: 181 EEKSEVDAFNSSLASLISS 199

[Close]

BLAST of Sed0003979 vs. NCBI nr
Match: XP_023545851.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545852.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545854.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-62
Identity = 151/196 (77.04%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS--PLLKSRFGCLYYHNNPKPLVICKINNDPPYKIP 60
           MA S LSTAN+FHSS P S+SSSSS  PLL+SRF CL   NN + LVICK NNDPP +IP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPPSQIP 60

Query: 61  TLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGVISS 120
           TLTKRSLSI  IS FI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LERQGVISS
Sbjct: 61  TLTKRSLSICFISGFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 120

Query: 121 AIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEEK 180
           A KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS EEK
Sbjct: 121 ANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSPEEK 180

Query: 181 SEADAFKSSLVSLISS 189
           SE DAF SSL SLISS
Sbjct: 181 SEVDAFNSSLASLISS 196

[Close]

BLAST of Sed0003979 vs. ExPASy Swiss-Prot
Match: O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 8.2e-28
Identity = 91/197 (46.19%), Postives = 119/197 (60.41%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTL 60
           MA S+L ++    + NPF +++ SS    S+   + Y  N K      +           
Sbjct: 1   MAKSLLCSS----TLNPFFSTTLSS----SKKNQIAYSGNSKNQTSSSL---------LW 60

Query: 61  TKRSLSISIISSFILVGLGFS-----EANAAILEADDDEELLEKVKADRKKWLERQGVIS 120
            +R LS+  +SS + +GL  +     +ANAAILEADDDEELLEKVK DRKK +ERQ V++
Sbjct: 61  KRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLN 120

Query: 121 SAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEE 180
           SA+KE G    L  KLSKVGQAI+N D   A  VLG   D +WV   NLAF+KLS+S EE
Sbjct: 121 SAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEE 180

Query: 181 KSEADAFKSSLVSLISS 189
            +E +AF SSL SLI+S
Sbjct: 181 NTEVEAFNSSLASLITS 180

[Close]

BLAST of Sed0003979 vs. ExPASy TrEMBL
Match: A0A5A7V8J2 (Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00360 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.3e-64
Identity = 152/198 (76.77%), Postives = 163/198 (82.32%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYK 60
           MA S LSTAN+FHSS P S+SSSSS    PLL+SRFGCLY HNN K LVICK ++DPP K
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGVI 120
           IP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSE 180
           SSA KE G    L  KLSKVGQAID+ DF+TASSVLGGSSDADWV NANLAF+KLSSS E
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEADAFKSSLVSLISS 189
           EKSE DAF SSL SLISS
Sbjct: 181 EKSEVDAFNSSLASLISS 198

[Close]

BLAST of Sed0003979 vs. ExPASy TrEMBL
Match: A0A1S3C541 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497128 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.3e-64
Identity = 152/198 (76.77%), Postives = 163/198 (82.32%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS----PLLKSRFGCLYYHNNPKPLVICKINNDPPYK 60
           MA S LSTAN+FHSS P S+SSSSS    PLL+SRFGCLY HNN K LVICK ++DPP K
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGVI 120
           IP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSE 180
           SSA KE G    L  KLSKVGQAID+ DF+TASSVLGGSSDADWV NANLAF+KLSSS E
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEADAFKSSLVSLISS 189
           EKSE DAF SSL SLISS
Sbjct: 181 EKSEVDAFNSSLASLISS 198

[Close]

BLAST of Sed0003979 vs. ExPASy TrEMBL
Match: A0A6J1G2S1 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450272 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.7e-64
Identity = 153/200 (76.50%), Postives = 162/200 (81.00%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS------PLLKSRFGCLYYHNNPKPLVICKINNDPP 60
           MA S LSTAN+FHSS P S+SSSSS      PLL+SRF CL Y NN + LVICK NNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  YKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQG 120
            +IPTLTKRSLSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSS 180
           VISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 SEEKSEADAFKSSLVSLISS 189
            EEKSE DAF SSL SLISS
Sbjct: 181 PEEKSEVDAFNSSLASLISS 200

[Close]

BLAST of Sed0003979 vs. ExPASy TrEMBL
Match: A0A0A0LI29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.8e-62
Identity = 150/202 (74.26%), Postives = 160/202 (79.21%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS--------PLLKSRFGCLYYHNNPKPLVICKINND 60
           MA + LSTAN+FHSS P S SSSSS        PL++SRFGCLY HNN K LVICK ++D
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPYKIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLER 120
           PP KIP LTKR+LSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LE+
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLS 180
           QGVISSA KE G    L  KLSKVGQAIDN DFSTASSVLGGSSDADWV  AN AF+KLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSSEEKSEADAFKSSLVSLISS 189
           SS EEKSE DAF SSL SLISS
Sbjct: 181 SSPEEKSEVDAFNSSLASLISS 202

[Close]

BLAST of Sed0003979 vs. ExPASy TrEMBL
Match: A0A6J1KEL3 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493636 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.1e-62
Identity = 150/199 (75.38%), Postives = 161/199 (80.90%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSS-----PLLKSRFGCLYYHNNPKPLVICKINNDPPY 60
           MA S LSTAN+FHSS+P S+SSSSS     PLL+SRF CL   NN +  VICK NNDPP 
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPS 60

Query: 61  KIPTLTKRSLSISIISSFI--LVGLGFSEANAAILEADDDEELLEKVKADRKKWLERQGV 120
           KIP+LTKRSLSI  ISSFI  LVG GFS+ANAAILEADDDEELLEKVK DRKK LERQGV
Sbjct: 61  KIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 ISSAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSS 180
           ISSA KE G    +  KLSKVGQAIDN DFSTASSVLGGS+DADWV NANLAF+KLS+S 
Sbjct: 121 ISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSP 180

Query: 181 EEKSEADAFKSSLVSLISS 189
           EEKSE DAF SSL SLISS
Sbjct: 181 EEKSEVDAFNSSLASLISS 199

[Close]

BLAST of Sed0003979 vs. TAIR 10
Match: AT4G02530.1 (chloroplast thylakoid lumen protein )

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-29
Identity = 91/197 (46.19%), Postives = 119/197 (60.41%), Query Frame = 0


Query: 1   MAASILSTANSFHSSNPFSTSSSSSPLLKSRFGCLYYHNNPKPLVICKINNDPPYKIPTL 60
           MA S+L ++    + NPF +++ SS    S+   + Y  N K      +           
Sbjct: 1   MAKSLLCSS----TLNPFFSTTLSS----SKKNQIAYSGNSKNQTSSSL---------LW 60

Query: 61  TKRSLSISIISSFILVGLGFS-----EANAAILEADDDEELLEKVKADRKKWLERQGVIS 120
            +R LS+  +SS + +GL  +     +ANAAILEADDDEELLEKVK DRKK +ERQ V++
Sbjct: 61  KRRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLN 120

Query: 121 SAIKETG----LKLKLSKVGQAIDNEDFSTASSVLGGSSDADWVLNANLAFSKLSSSSEE 180
           SA+KE G    L  KLSKVGQAI+N D   A  VLG   D +WV   NLAF+KLS+S EE
Sbjct: 121 SAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEE 180

Query: 181 KSEADAFKSSLVSLISS 189
            +E +AF SSL SLI+S
Sbjct: 181 NTEVEAFNSSLASLITS 180

The following BLAST results are available for this feature:

BLAST of Sed0003979 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457444.1	6.9e-64	76.77	PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA...	[more]
XP_038889145.1	1.2e-63	76.62	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_022946074.1	1.2e-63	76.50	thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucurbita moschata]	[more]
KAG7030378.1	9.9e-63	76.38	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023545851.1	1.3e-62	77.04	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub...	[more]

BLAST of Sed0003979 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22773	8.2e-28	46.19	Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0003979 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8J2	3.3e-64	76.77	Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C541	3.3e-64	76.77	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1G2S1	5.7e-64	76.50	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0LI29	1.8e-62	74.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1	[more]
A0A6J1KEL3	3.1e-62	75.38	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of Sed0003979 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02530.1	5.8e-29	46.19	chloroplast thylakoid lumen protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR038862	Chloroplast thylakoid lumenal protein MPH2	PANTHER	PTHR35742	THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003979.1	Sed0003979.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010206	photosystem II repair