Sed0003958 (gene) Chayote v1

Overview


Name	Sed0003958
Type	gene
Organism	Sechium edule (Chayote v1)
Description	WD_REPEATS_REGION domain-containing protein
Location	LG13: 5903136 .. 5907395 (-)
RNA-Seq Expression	Sed0003958
Synteny	Sed0003958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGGGCTGAAGATTGTAGCAGGCGAAGGTGTGAAGAAGAAACTGAGAGTGTTGAGATGGAGAAGGCTATGGCGACGTTGGGCAAAGGGACGGTCTGTTCAGGTTGGAACTTCTCCGGCAACAGATTCGCCACCGGTTCGGCGGACGGAACCCTCGTCCTCTTCGATTCTCCGGACCCTTCTTCCTCGTCGCCGTCCTTATCTCGCACTTCAAACATCAAGGTTTCTCAGCTCCCATTCTCATTATCTTACTCGGAATTCATTTTTGATTTGGGCTGATCTTACTTCTTGATGGCTGTTAGTTTTCATTTCAAAAAATGAGCAACGATTTAAGATTCTTGAGATGTATCAGTCATGCTCTTTGATTTCGTGCTTAGATTAGGTTTAATGGAGCCTTTATGTAAGCTTTTAGTTCATCGATTAAGATATTAAGGAAACTAAGAGTGGAGAGGGTGCAATGATGAACGAATAATTGGGGAGGGGGGGGGGCGGACTGGTGTAATCATGCCTATGACTCAACTTGGCACCGAGAGACATGGAGACATAAGCAGTGTCTACAAATTAATGTAAGTCTCGAACCTAAGACCTTGAGGAGAGCACATCTTCAAAGTTCAAACATTCTACCACCACACCACCCGTTGGGATATTTATTAGGATATTTGTTAGAGATTTTTTTAAGATATGATATTTTATGAACTATAAACTATATATGTTTGGAGGCTTAGGCCTCTGTGAGATTTATCATGGTATCAAAGCATATATTTATTAATGTGACACATTTTCATCATTACATGGTATGCTGACCATTGAGTCATATCACACTTTTTTCTAATTCAAAGCTAGTACAGGCAAAACCGAGGGAATATTCAAAGCCAAACAGGAAGTTTGCTCTCACCCTTTTCATTGTATGACTTATGTTTTTTCTTGATGAAGGCAAGGGCCTTAAGCTTGTGAAAATTTTGAAGGTGGAAAGGAAAATGTGCTCTTATAAGATCATACTTGTTGTAGAAATGAAATAGATAGAAAAAACCCAAGAGCTTAGCTCAACTGGCGGAATGTATGTGCTTATGGCCTAGAGGTCATGTGTTTGAAGTCTCCGATTCTCTCTCTCTCTCTGATGTCTTGGCTTGCTAGATCTTGATCTAGAAAAAGCTTTTAAGAGTGAAGTCTGCTCTAGCCTTAACCATGTGAAGCCATCTTTGTAGGCACATGAGGCTGCAATTTTTAAGATTGTTTGGGTCCCTCCTGAGTATGGTGATTCTGTTGCATGCATTTGTTCGGATGGAACTTCGTCATTGTGGGAGGAGGTTGTTGAAGGTAATCATTTAGTTTTTTATTGAACCTGAGTCCTTTCTCAAATTATATGGTTACATTATCTATGTTTATTTCTTTCATCTTATCTTTCCCCTTTACTTGGCTCAAGATCATGGTGTACATAAACCATAAACCCTCATTTGTCTAAAATTTGAAGTGTCTTAATCATTATTTAAATTCATTACATGTTGCTGCTTTCTAGATGCCCAGCCTCTGCAGTGGAAGCTATGCAAACACTTCAAAAGTAATTCATCTCAAATCCTAGATGTCCAATTTGGAAATTCTGCCTCCAGTCTGAAAATGGTAACTGATGATATTTCTTCTGCTTCTCTTGCTCAATAATTGATGTATATCATGAAGTGTTGTTACCTTACTGGTGGATGGTTCCTGTGTTTTATGGCTACTTGGTAATTTCCTTTGATATTTAACACATACTACAATTACTTCATCTTTTATGACTTTAGAACTTAACATATCACCATTTCTCTCAAAGATTTATTTGAATATAAATGTGATAATTTTATCAAGAATAACTTTGGATGGTTGAAATATTTTCTCATTGTTTCTTTTTCATAACATTTTTTTATGTTCATGAAAGCTTATTTCCTTTTAGAGACCCTTTACATTCTTTTATATGCTTTTTATTTTTTGTAGATTATGGCATTTTCAGACGGTCATGTGAAAGTTTATGAGCTTATGGATCCTTTGGATTTGAAGAATTGGCAACTTCAGGTGATCAATCTTTTTTATTATTATTACTGCTATTTTTTTTTTGTTCATTTTCTCTAATTTTATTGACATATAAGTGCCTCAACACATCATGAATGGCGAGCTAGTTTTATGATATTCATCTATAAACCCAGATGATCAACATCTGTTGAGTTGTAGGTATTTAAAAACATCTTTATTTCTTATCTTTTGAGTTAAATGAGAATCATGAAAAATTACCAGGTTAATACCCATGGATTCTTCAGATCCAAGGAATAAGCCAATTCGTTCTTAGTTGACAATGTGTTCTTTCTTGCACTTTCTTGGTGTAAATTGAATCCTCAATTTCATTTGTATAGTTTTGTTTCTCTTTTTTCTAATTGGAAGTTTAATGCAACTCCCTTGAATTATCATCCTCAAAAAAAAAAAAAAAAATCCCTTGAATTATTAACCCTTTTTGTAAATTTGATACGTAAGAAACTTTTGACTCCTACTTTCAACTTTTGTGCAGGCTGAATTTCAGAATGTCATTGATTCCATTTCTACAGTCAGGAAAGCATCTTGCTTGTCTGCAAGTATATCTTGGAACCCACATCGAGGTGACAGACAGCAATCAAGCTTTGTTTTGGCTTTTAGTTCGGACACGCCACAGCTTAATTCTGCCAAGGTATTCCAAGTTCTGATTTACTGCAATCGAAATTGTGATATGGCCAGCTGCTCACAGCTTATTGGTTAGTCTGCGATGATTGCATTAACTATAAAATGTGTGTACCCTAGTAAAGATGGTATTTGTGCTCCACAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTTTCAGAGTTGGCATTGGCGGCAGAAAAAGGAGATGAGGTTTATGCTGCTGCGTGGGCACAGAATATTGGAAGGTAATGGACTAGTTCCTAGAGAAGCTGCATATAATAGGTGTATCTGTTGCATAATATAATTTTCAAACACACGGGCTTAGTAAATATATCCTTGTTTAATTTTTTTATATCCTTTATCGTGCTGTCCTTTAATTTTTTGGTTGTCACAAACTTCCCAAAGCAATTCCTGATAACCTTTGGAAAGAATCACCATGATGAGTCTTGATATAACCAAATTCCTTCACGTGTTTACTTAAAATCCTTAAAAATGGTTGAGTAATCTTAAATATTAATAGTGGCATTAATCGTTGTTGAAATACCTTTTAGGCCATATGAGGTAATAGCTGTTGCAACCCTGAAAGGGATTGCAATATGGCGCCTTGGATTAAACCCGGACACTGATGGAAGGCTCTCAACAGAAAGAGTTGCTCTGCTTTCTGGGCATAATGGCGAGGTATCTCTTCAAATTTTGCTCTGTTCTCTCATTACCCTTTTTTCCTTTGTATTTCTTGAGAATCCAAAGACGGATGGATTTTAAACATCCATCTGTTAAGAGAAATACCTGGTTTAGAGAGAAGGAATTCGTTTGAATCCATGTCATTGAAACCTTAGTTGACTGCAAATGTTGCTAGGATTTAGTTGGTATGGTTCTATGAACTGCATCTGCATGTTCAGGATTTGGCTATGTTTCAATTATCCTTATATAGGAGAGAAGAGGTGGTAGGTAATTGATTATCATGTTTTCACTTGCAATGACAGGTGTGGGAAATGGAGTGGGACATGGGTGGTATGACATTAGCATCGACAGGAAAGGATGGGATGGTCCGGTTATGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAACCTTGAAAACTTTTTTCTTCTCTATATGATGTAACCACTTCCTGTATTTATAGGGAAGATTTTTTTGAATTATATTGTTTGTCTTGCTTAGTGGGGTGCTAAGATTAGAAACATGTTATTCGACATCATTCGAAAAGATCAAATGCCATTGAAGCTTTTATTTCTCCTAATTACTCTTGCTTAGTTCAGACTTCTGGTGCTCAAGAACTATAGAGTGATTACACACTCTCACAAGAAGATAGAATAACTTGAATTAGAGAGATCGAGAATTGAGTTTTAACATGAGATGCTGATAAATCGGAAGGAAAATAATCACGGAGTATTGCGTTTAAAACTGAGGATATTATAGTGTTTCTTTCCATTTACGTTGAAAAGAACAGTTCTTATAAACAGCTTTAAAATAAATATTAGAAATTTAACTTTAGAGGTTTAACAATAGCTGATAGCCTAAAG

mRNA sequence

CAAAGGGCTGAAGATTGTAGCAGGCGAAGGTGTGAAGAAGAAACTGAGAGTGTTGAGATGGAGAAGGCTATGGCGACGTTGGGCAAAGGGACGGTCTGTTCAGGTTGGAACTTCTCCGGCAACAGATTCGCCACCGGTTCGGCGGACGGAACCCTCGTCCTCTTCGATTCTCCGGACCCTTCTTCCTCGTCGCCGTCCTTATCTCGCACTTCAAACATCAAGGCACATGAGGCTGCAATTTTTAAGATTGTTTGGGTCCCTCCTGAGTATGGTGATTCTGTTGCATGCATTTGTTCGGATGGAACTTCGTCATTGTGGGAGGAGGTTGTTGAAGATGCCCAGCCTCTGCAGTGGAAGCTATGCAAACACTTCAAAAGTAATTCATCTCAAATCCTAGATGTCCAATTTGGAAATTCTGCCTCCAGTCTGAAAATGATTATGGCATTTTCAGACGGTCATGTGAAAGTTTATGAGCTTATGGATCCTTTGGATTTGAAGAATTGGCAACTTCAGGCTGAATTTCAGAATGTCATTGATTCCATTTCTACAGTCAGGAAAGCATCTTGCTTGTCTGCAAGTATATCTTGGAACCCACATCGAGGTGACAGACAGCAATCAAGCTTTGTTTTGGCTTTTAGTTCGGACACGCCACAGCTTAATTCTGCCAAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTTTCAGAGTTGGCATTGGCGGCAGAAAAAGGAGATGAGGTTTATGCTGCTGCGTGGGCACAGAATATTGGAAGGCCATATGAGGTAATAGCTGTTGCAACCCTGAAAGGGATTGCAATATGGCGCCTTGGATTAAACCCGGACACTGATGGAAGGCTCTCAACAGAAAGAGTTGCTCTGCTTTCTGGGCATAATGGCGAGGTGTGGGAAATGGAGTGGGACATGGGTGGTATGACATTAGCATCGACAGGAAAGGATGGGATGGTCCGGTTATGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAACCTTGAAAACTTTTTTCTTCTCTATATGATGTAACCACTTCCTGTATTTATAGGGAAGATTTTTTTGAATTATATTGTTTGTCTTGCTTAGTGGGGTGCTAAGATTAGAAACATGTTATTCGACATCATTCGAAAAGATCAAATGCCATTGAAGCTTTTATTTCTCCTAATTACTCTTGCTTAGTTCAGACTTCTGGTGCTCAAGAACTATAGAGTGATTACACACTCTCACAAGAAGATAGAATAACTTGAATTAGAGAGATCGAGAATTGAGTTTTAACATGAGATGCTGATAAATCGGAAGGAAAATAATCACGGAGTATTGCGTTTAAAACTGAGGATATTATAGTGTTTCTTTCCATTTACGTTGAAAAGAACAGTTCTTATAAACAGCTTTAAAATAAATATTAGAAATTTAACTTTAGAGGTTTAACAATAGCTGATAGCCTAAAG

Coding sequence (CDS)

ATGGAGAAGGCTATGGCGACGTTGGGCAAAGGGACGGTCTGTTCAGGTTGGAACTTCTCCGGCAACAGATTCGCCACCGGTTCGGCGGACGGAACCCTCGTCCTCTTCGATTCTCCGGACCCTTCTTCCTCGTCGCCGTCCTTATCTCGCACTTCAAACATCAAGGCACATGAGGCTGCAATTTTTAAGATTGTTTGGGTCCCTCCTGAGTATGGTGATTCTGTTGCATGCATTTGTTCGGATGGAACTTCGTCATTGTGGGAGGAGGTTGTTGAAGATGCCCAGCCTCTGCAGTGGAAGCTATGCAAACACTTCAAAAGTAATTCATCTCAAATCCTAGATGTCCAATTTGGAAATTCTGCCTCCAGTCTGAAAATGATTATGGCATTTTCAGACGGTCATGTGAAAGTTTATGAGCTTATGGATCCTTTGGATTTGAAGAATTGGCAACTTCAGGCTGAATTTCAGAATGTCATTGATTCCATTTCTACAGTCAGGAAAGCATCTTGCTTGTCTGCAAGTATATCTTGGAACCCACATCGAGGTGACAGACAGCAATCAAGCTTTGTTTTGGCTTTTAGTTCGGACACGCCACAGCTTAATTCTGCCAAGGTTTGGGAATTTGATCAGGCTCATCAAAGATGGCTTCCAGTTTCAGAGTTGGCATTGGCGGCAGAAAAAGGAGATGAGGTTTATGCTGCTGCGTGGGCACAGAATATTGGAAGGCCATATGAGGTAATAGCTGTTGCAACCCTGAAAGGGATTGCAATATGGCGCCTTGGATTAAACCCGGACACTGATGGAAGGCTCTCAACAGAAAGAGTTGCTCTGCTTTCTGGGCATAATGGCGAGGTGTGGGAAATGGAGTGGGACATGGGTGGTATGACATTAGCATCGACAGGAAAGGATGGGATGGTCCGGTTATGGCAATCCAACCTCAATGGTGTTTGGCACCAACATGCTGCATTTGAGCCCACTTCTTAA

Protein sequence

MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAAIFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNSASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPHRGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNIGRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLASTGKDGMVRLWQSNLNGVWHQHAAFEPTS

Homology

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BLAST of Sed0003958 vs. NCBI nr
Match: XP_038897768.1 (protein SEH1 [Benincasa hispida])

HSP 1 Score: 616.3 bits (1588), Expect = 1.5e-172
Identity = 295/327 (90.21%), Postives = 309/327 (94.50%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMATLGKGT+CS WN+S NR ATGSADGTL++FDSPDPSSSS SL+RTSN K HEAA
Sbjct: 1   MEKAMATLGKGTLCSAWNYSANRLATGSADGTLLIFDSPDPSSSSTSLTRTSNFKVHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           I KIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFK NSSQILD+QFGNS
Sbjct: 61  IIKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKCNSSQILDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDGH+KVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA C SASISWNPH
Sbjct: 121 SSGLKMIAAFSDGHIKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAFCSSASISWNPH 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+ QQ SFVLAFSS+TPQLNSAKVWEFDQAHQRWLPV+ELAL A+KGDEVYA AWAQNI
Sbjct: 181 RGE-QQPSFVLAFSSNTPQLNSAKVWEFDQAHQRWLPVAELALTADKGDEVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIWRLGL+PDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWRLGLSPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHA FEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHATFEPTS 326

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BLAST of Sed0003958 vs. NCBI nr
Match: KAG6600526.1 (Protein SEH1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 607.4 bits (1565), Expect = 7.0e-170
Identity = 289/327 (88.38%), Postives = 310/327 (94.80%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGTVCS WN+S +R  TGSADGT+V+FDS DPSSSS SL+RTSN KAHEAA
Sbjct: 1   MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVIFDSLDPSSSSTSLTRTSNFKAHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           IFKIVWVPPEYGDS+ACICSDG+SSLWEEVVEDAQPLQWKL KHFKSNSSQI+D+QFGNS
Sbjct: 61  IFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQIIDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG+VKVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA+CLSASISWNP+
Sbjct: 121 SSGLKMIAAFSDGNVKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPN 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLAF SDTPQL+SAKVWEFDQAHQRWLPV+ELAL A+KGD VYA AWAQNI
Sbjct: 181 RGERQQSSFVLAFRSDTPQLDSAKVWEFDQAHQRWLPVAELALEADKGDGVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KG+AIWRLGLNPD+DGRLSTERVALLSGHNGEVW+MEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGVAIWRLGLNPDSDGRLSTERVALLSGHNGEVWDMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. NCBI nr
Match: XP_023547085.1 (protein SEH1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 607.1 bits (1564), Expect = 9.2e-170
Identity = 290/327 (88.69%), Postives = 309/327 (94.50%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGTVCS WN+S +R  TGSADGT+V+FDS DPSSSS SL+RTSN K HEAA
Sbjct: 1   MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVIFDSLDPSSSSTSLTRTSNFKVHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           IFKIVWVPPEYGDS+ACICSDG+SSLWEEVVEDAQPLQWKL KHFKSNSSQILD+QFGNS
Sbjct: 61  IFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQILDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG+VKVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA+CLSASISWNP+
Sbjct: 121 SSGLKMIAAFSDGNVKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPN 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLAF SDTPQL+SAKVWEFDQAHQRWLPV+ELAL A+KGD VYA AWAQNI
Sbjct: 181 RGERQQSSFVLAFHSDTPQLDSAKVWEFDQAHQRWLPVAELALEADKGDGVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIWRLGLNPD+DGRLSTERVALLSGHNGEVW+MEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNGEVWDMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. NCBI nr
Match: XP_022942103.1 (protein SEH1 [Cucurbita moschata])

HSP 1 Score: 606.7 bits (1563), Expect = 1.2e-169
Identity = 289/327 (88.38%), Postives = 310/327 (94.80%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGTVCS WN+S +R  TGSADGT+V+FDS DPSSSS SL+RTSN KAHEAA
Sbjct: 1   MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVIFDSLDPSSSSTSLTRTSNFKAHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           IFKIVWVPPEYGDS+ACICSDG+SSLWEEVVEDAQPLQWKL KHFKSNSSQI+D+QFGNS
Sbjct: 61  IFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQIIDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG++KVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA+CLSASISWNP+
Sbjct: 121 SSGLKMIAAFSDGNLKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPN 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLAF SDTPQL+SAKVWEFDQAHQRWLPV+ELAL A+KGD VYA AWAQNI
Sbjct: 181 RGERQQSSFVLAFRSDTPQLDSAKVWEFDQAHQRWLPVAELALEADKGDGVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIWRLGLNPD+DGRLSTERVALLSGHNGEVW+MEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNGEVWDMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. NCBI nr
Match: KAG7031165.1 (Protein SEH1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 606.3 bits (1562), Expect = 1.6e-169
Identity = 289/327 (88.38%), Postives = 309/327 (94.50%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGTVCS WN+S +R  TGSADGT+V+FDS DPSSSS SL+RTSN KAHE A
Sbjct: 1   MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVIFDSLDPSSSSTSLTRTSNFKAHETA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           IFKIVWVPPEYGDS+ACICSDG+SSLWEEVVEDAQPLQWKL KHFKSNSSQI+D+QFGNS
Sbjct: 61  IFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQIIDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG+VKVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA+CLSASISWNP+
Sbjct: 121 SSGLKMIAAFSDGNVKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPN 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLAF SDTPQL+SAKVWEFDQAHQRWLPV+ELAL A+KGD VYA AWAQNI
Sbjct: 181 RGERQQSSFVLAFRSDTPQLDSAKVWEFDQAHQRWLPVAELALEADKGDGVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIWRLGLNPD+DGRLSTERVALLSGHNGEVW+MEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNGEVWDMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. ExPASy Swiss-Prot
Match: Q93VR9 (Protein SEH1 OS=Arabidopsis thaliana OX=3702 GN=SEH1 PE=1 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 7.6e-127
Identity = 209/325 (64.31%), Postives = 262/325 (80.62%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           M K+MATL  GT CS WN SG+R A GS +G L +++S   +SSS + S TS ++  E++
Sbjct: 1   MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYES--STSSSSTFSCTSKVRVSESS 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           I KIVW+P EYGD+VAC+C DG+ S+WEE+ EDA  L+WKLCK  K+ SSQ+LDVQFG S
Sbjct: 61  IVKIVWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
             SLKM+ A+SDG+++V+EL++PL+LKNWQLQAEFQNVIDS+ST+ K S LSAS+SWNP 
Sbjct: 121 RKSLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPM 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           +G+ Q+ SFVLAF+SD+P LNS+K+WEFD+AH RWL V+ELAL  +KGD VYA +WA NI
Sbjct: 181 KGEEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEV+AVAT KGI IW +GL PD +GRL  ++V+ LSGH GEVW+MEWDM GMTLAST
Sbjct: 241 GRPYEVVAVATHKGIGIWHVGLAPDLEGRLPVKKVSSLSGHQGEVWQMEWDMSGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEP 326
           G DGMV+LWQSNLNG WH+ A  EP
Sbjct: 301 GSDGMVKLWQSNLNGEWHEQATLEP 323

[Close]

BLAST of Sed0003958 vs. ExPASy Swiss-Prot
Match: C1BK83 (Nucleoporin SEH1 OS=Osmerus mordax OX=8014 GN=seh1l PE=2 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-33
Identity = 94/313 (30.03%), Postives = 155/313 (49.52%), Query Frame = 0


Query: 17  WNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAAIFKIVWVPPEYGDSVA 76
           ++F G R AT S+D ++ ++D  D    +   + T++ K H  +++++ W  PE+G  +A
Sbjct: 20  YDFHGRRMATCSSDQSVKVWDKSD----NGEWNCTASWKTHSGSVWRVTWAHPEFGQVLA 79

Query: 77  CICSDGTSSLWEEVVEDAQPLQWKLCKHFK-----SNSSQILDVQFGNSASSLKMIMAFS 136
               D T+++WEE+V ++   Q  L    K      + + + DV+F      L +    +
Sbjct: 80  SCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSA 139

Query: 137 DGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPHRGDRQQSSFVL 196
           DG V++YE  D ++L  W LQ E       IS     SC    ISWNP    R  S  + 
Sbjct: 140 DGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSC----ISWNP-SSSRAHSPMIA 199

Query: 197 AFSSDTPQLNSAKV--WEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNIGRPYEVIAV 256
             S D+    S KV  +E+ +  +++  V  L       D V+  A+A N+GR + V+A+
Sbjct: 200 VGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTVT---DPVHDIAFAPNLGRSFHVLAI 259

Query: 257 ATLKGIAIWRL-----GLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLASTGKDG 316
           AT K + I++L       +     +L  +  A   GHN +VW + W++    LAS+G DG
Sbjct: 260 AT-KDVRIFKLIPMRKESSSSGPTKLEVQLQAQFDGHNSQVWRVSWNITSTLLASSGDDG 312

Query: 317 MVRLWQSNLNGVW 318
            VRLW++N    W
Sbjct: 320 CVRLWKANYMDNW 312

[Close]

BLAST of Sed0003958 vs. ExPASy Swiss-Prot
Match: Q6GNF1 (Nucleoporin SEH1-B OS=Xenopus laevis OX=8355 GN=seh1l-b PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31
Identity = 89/314 (28.34%), Postives = 153/314 (48.73%), Query Frame = 0


Query: 17  WNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAAIFKIVWVPPEYGDSVA 76
           ++F G R AT S+D ++ ++D     S + +   T++ K H  +++++ W  PE+G  +A
Sbjct: 20  FDFHGRRMATCSSDQSVKVWD----KSENVNWHCTASWKTHSGSVWRVTWAHPEFGQVLA 79

Query: 77  CICSDGTSSLWEEVVEDAQ-----PLQWKLCKHFKSNSSQILDVQFGNSASSLKMIMAFS 136
               D T+++WEE+V ++         W        + + + DV+F      L +    +
Sbjct: 80  SCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSA 139

Query: 137 DGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPHRGDRQQSSFVL 196
           DG V++YE  D ++L  W LQ E       IS     SC    ISWNP    R  S  + 
Sbjct: 140 DGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSC----ISWNP-SSSRAHSPMIA 199

Query: 197 AFSSDTPQ--LNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNIGRPYEVIAV 256
             S D+    +   +++E+++  +++     L   +   D V+  A+A N+GR + ++AV
Sbjct: 200 VGSDDSSPNIMGKVQIYEYNENTRKYAKAETLMSVS---DPVHDIAFAPNLGRSFHILAV 259

Query: 257 ATLKGIAIWR---LGLNPDTDG---RLSTERVALLSGHNGEVWEMEWDMGGMTLASTGKD 316
           AT K + I+    L     + G   +     VA    HN +VW + W++ G  LAS+G D
Sbjct: 260 AT-KDVRIFTMKPLRKELSSSGGVTKFENHTVAQFDNHNSQVWRVSWNITGTVLASSGDD 313

Query: 317 GMVRLWQSNLNGVW 318
           G VRLW++N    W
Sbjct: 320 GTVRLWKANYMDNW 313

[Close]

BLAST of Sed0003958 vs. ExPASy Swiss-Prot
Match: Q96EE3 (Nucleoporin SEH1 OS=Homo sapiens OX=9606 GN=SEH1L PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31
Identity = 91/314 (28.98%), Postives = 150/314 (47.77%), Query Frame = 0


Query: 17  WNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAAIFKIVWVPPEYGDSVA 76
           ++F G R AT S+D ++ ++D     S S     T++ K H  +++++ W  PE+G  +A
Sbjct: 20  FDFHGRRMATCSSDQSVKVWD----KSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLA 79

Query: 77  CICSDGTSSLWEEVVEDAQ-----PLQWKLCKHFKSNSSQILDVQFGNSASSLKMIMAFS 136
               D T+++WEE+V ++         W        + + + DV+F      L +    +
Sbjct: 80  SCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSA 139

Query: 137 DGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPHRGDRQQSSFVL 196
           DG V++YE  D ++L  W LQ E       IS     SC    ISWNP    R  S  + 
Sbjct: 140 DGIVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSC----ISWNP-SSSRAHSPMIA 199

Query: 197 AFSSDTPQLNSAKV--WEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNIGRPYEVIAV 256
             S D+     AKV  +E+++  +++     L       D V+  A+A N+GR + ++A+
Sbjct: 200 VGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVT---DPVHDIAFAPNLGRSFHILAI 259

Query: 257 ATLKGIAIWRLG------LNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLASTGKD 316
           AT K + I+ L        +     +     VA    HN +VW + W++ G  LAS+G D
Sbjct: 260 AT-KDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDD 313

Query: 317 GMVRLWQSNLNGVW 318
           G VRLW++N    W
Sbjct: 320 GCVRLWKANYMDNW 313

[Close]

BLAST of Sed0003958 vs. ExPASy Swiss-Prot
Match: Q4FZW5 (Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-31
Identity = 89/314 (28.34%), Postives = 153/314 (48.73%), Query Frame = 0


Query: 17  WNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAAIFKIVWVPPEYGDSVA 76
           ++F G R AT S+D ++ ++D     S + +   T++ K H  +++++ W  PE+G  +A
Sbjct: 20  FDFHGRRMATCSSDQSVKVWD----KSENGNWHCTASWKTHSGSVWRVTWAHPEFGQVLA 79

Query: 77  CICSDGTSSLWEEVVEDAQ-----PLQWKLCKHFKSNSSQILDVQFGNSASSLKMIMAFS 136
               D T+++WEE+V ++         W        + + + DV+F      L +    +
Sbjct: 80  SCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSA 139

Query: 137 DGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPHRGDRQQSSFVL 196
           DG V++YE  D ++L  W LQ E       IS     SC    ISWNP    R  S  + 
Sbjct: 140 DGVVRIYEAPDVMNLSQWSLQHE-------ISCKLSCSC----ISWNP-SSSRAHSPMIA 199

Query: 197 AFSSDTPQ--LNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNIGRPYEVIAV 256
             S D+    +   +++E+++  +++     L   +   D V+  A+A N+GR + ++AV
Sbjct: 200 VGSDDSSPNIMGKVQIYEYNENTRKYAKAETLMSVS---DPVHDIAFAPNLGRSFHILAV 259

Query: 257 ATLKGIAIWR---LGLNPDTDG---RLSTERVALLSGHNGEVWEMEWDMGGMTLASTGKD 316
           AT K + I+    L     + G   +     VA    HN +VW + W++ G  LAS+G D
Sbjct: 260 AT-KDVRIFTMKPLRKELSSSGGVTKFEIHTVAQFDNHNSQVWRVSWNITGTVLASSGDD 313

Query: 317 GMVRLWQSNLNGVW 318
           G VRLW++N    W
Sbjct: 320 GTVRLWKANYMDNW 313

[Close]

BLAST of Sed0003958 vs. ExPASy TrEMBL
Match: A0A6J1FTY0 (protein SEH1 OS=Cucurbita moschata OX=3662 GN=LOC111447274 PE=3 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 5.8e-170
Identity = 289/327 (88.38%), Postives = 310/327 (94.80%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGTVCS WN+S +R  TGSADGT+V+FDS DPSSSS SL+RTSN KAHEAA
Sbjct: 1   MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVIFDSLDPSSSSTSLTRTSNFKAHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           IFKIVWVPPEYGDS+ACICSDG+SSLWEEVVEDAQPLQWKL KHFKSNSSQI+D+QFGNS
Sbjct: 61  IFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQIIDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG++KVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA+CLSASISWNP+
Sbjct: 121 SSGLKMIAAFSDGNLKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPN 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLAF SDTPQL+SAKVWEFDQAHQRWLPV+ELAL A+KGD VYA AWAQNI
Sbjct: 181 RGERQQSSFVLAFRSDTPQLDSAKVWEFDQAHQRWLPVAELALEADKGDGVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIWRLGLNPD+DGRLSTERVALLSGHNGEVW+MEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNGEVWDMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. ExPASy TrEMBL
Match: A0A6J1J2X1 (protein SEH1 OS=Cucurbita maxima OX=3661 GN=LOC111480853 PE=3 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 2.9e-169
Identity = 289/327 (88.38%), Postives = 309/327 (94.50%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGTVCS WN+S +R  TGSADGT+V+FDS DPSSSS SL+RTSN KAHEAA
Sbjct: 1   MEKAMATFDKGTVCSAWNYSASRLVTGSADGTVVVFDSLDPSSSSTSLTRTSNFKAHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           IFKIVWVPPEYGDS+ACICSDG+SSLWEEVVEDAQPLQWKL KHFKSNSSQILD+QFGNS
Sbjct: 61  IFKIVWVPPEYGDSIACICSDGSSSLWEEVVEDAQPLQWKLSKHFKSNSSQILDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG+VKVYELMDPLDLK+WQLQAEFQNVIDSISTVRKA+CLSASISWNP+
Sbjct: 121 SSGLKMIAAFSDGNVKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKAACLSASISWNPN 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLAF SDTPQL+SAKVWEFD+AHQRWLPV+ELAL A+KGD VYA AWAQNI
Sbjct: 181 RGERQQSSFVLAFRSDTPQLDSAKVWEFDRAHQRWLPVAELALEADKGDGVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIWRLGLNPD+DGRLSTERVALLSGHN EVW+MEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWRLGLNPDSDGRLSTERVALLSGHNSEVWDMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. ExPASy TrEMBL
Match: A0A1S3BTS7 (protein SEH1 OS=Cucumis melo OX=3656 GN=LOC103493086 PE=3 SV=1)

HSP 1 Score: 602.4 bits (1552), Expect = 1.1e-168
Identity = 291/327 (88.99%), Postives = 308/327 (94.19%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGT+CS WN S +R AT S+DGTLV+FDSP PSSSS SL+RTSN KAHEAA
Sbjct: 1   MEKAMATFDKGTLCSAWNHSSSRLATASSDGTLVIFDSPHPSSSSTSLTRTSNFKAHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           I KIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPL+WKLCK FKSNSSQILD+QFGNS
Sbjct: 61  ITKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLEWKLCKLFKSNSSQILDLQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG++KVYELMDPLDLK+WQLQAEFQNVIDSISTVRK+SC SASISWNPH
Sbjct: 121 SSGLKMIAAFSDGYIKVYELMDPLDLKSWQLQAEFQNVIDSISTVRKSSCSSASISWNPH 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+ QQSSFVLAFSS+TPQLNSAKVWEFDQAHQRWLPV+ELAL AEKGDEVYA AWAQNI
Sbjct: 181 RGE-QQSSFVLAFSSNTPQLNSAKVWEFDQAHQRWLPVAELALTAEKGDEVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT +GIAIWRLGL+PDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQRGIAIWRLGLSPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 326

[Close]

BLAST of Sed0003958 vs. ExPASy TrEMBL
Match: A0A6J1C5X6 (protein SEH1 OS=Momordica charantia OX=3673 GN=LOC111008268 PE=3 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.4e-168
Identity = 288/327 (88.07%), Postives = 303/327 (92.66%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           ME AMA+  KGT+CS WN+S +R AT S DGTLV+FDSPDPSSSS SL+RTSN KAHEAA
Sbjct: 1   MESAMASFDKGTLCSAWNYSASRLATASVDGTLVIFDSPDPSSSSTSLTRTSNFKAHEAA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           I KIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCK FKSNS+Q+LD+QFGNS
Sbjct: 61  ILKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKRFKSNSAQMLDIQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFS  HVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH
Sbjct: 121 SSGLKMIAAFSHCHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+RQQSSFVLA +S+TPQLNSAKVWEFDQAHQRWLPV+ELAL A+KGDEVYA AWAQNI
Sbjct: 181 RGERQQSSFVLALNSNTPQLNSAKVWEFDQAHQRWLPVAELALPADKGDEVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT KGIAIW LG NPD DGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQKGIAIWHLGSNPDMDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQ AAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQLAAFEPTS 327

[Close]

BLAST of Sed0003958 vs. ExPASy TrEMBL
Match: A0A0A0KWZ8 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G051460 PE=3 SV=1)

HSP 1 Score: 589.3 bits (1518), Expect = 9.6e-165
Identity = 284/327 (86.85%), Postives = 301/327 (92.05%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           MEKAMAT  KGT+CS WN+S  R AT S+DGTLV+FDSP PSSSS S + TSN KAHE A
Sbjct: 1   MEKAMATFHKGTLCSAWNYSSTRLATASSDGTLVIFDSPHPSSSSTSFTPTSNFKAHEVA 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           I KIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCK FKSNSSQILD+QFGNS
Sbjct: 61  ITKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKLFKSNSSQILDLQFGNS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
           +S LKMI AFSDG++KVYELMDPL+LKNWQLQAEFQNVIDSISTVRK+SC SASISWNPH
Sbjct: 121 SSGLKMIAAFSDGYIKVYELMDPLNLKNWQLQAEFQNVIDSISTVRKSSCSSASISWNPH 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           RG+ QQSSFV+AFSS+TPQLNSAKVWEFDQAH RWLPV+ELAL AEKGDEVYA AWAQNI
Sbjct: 181 RGE-QQSSFVIAFSSNTPQLNSAKVWEFDQAHHRWLPVAELALTAEKGDEVYAVAWAQNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEVIAVAT +GIAIW LGL+PD DGRLS ERVALLSGHNGEVWEMEWDMGGMTLAST
Sbjct: 241 GRPYEVIAVATQRGIAIWHLGLSPDMDGRLSRERVALLSGHNGEVWEMEWDMGGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 328
           GKDGMVRLWQSNLNGVWHQHAAFEPTS
Sbjct: 301 GKDGMVRLWQSNLNGVWHQHAAFEPTS 326

[Close]

BLAST of Sed0003958 vs. TAIR 10
Match: AT1G64350.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 454.9 bits (1169), Expect = 5.4e-128
Identity = 209/325 (64.31%), Postives = 262/325 (80.62%), Query Frame = 0


Query: 1   MEKAMATLGKGTVCSGWNFSGNRFATGSADGTLVLFDSPDPSSSSPSLSRTSNIKAHEAA 60
           M K+MATL  GT CS WN SG+R A GS +G L +++S   +SSS + S TS ++  E++
Sbjct: 1   MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYES--STSSSSTFSCTSKVRVSESS 60

Query: 61  IFKIVWVPPEYGDSVACICSDGTSSLWEEVVEDAQPLQWKLCKHFKSNSSQILDVQFGNS 120
           I KIVW+P EYGD+VAC+C DG+ S+WEE+ EDA  L+WKLCK  K+ SSQ+LDVQFG S
Sbjct: 61  IVKIVWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVS 120

Query: 121 ASSLKMIMAFSDGHVKVYELMDPLDLKNWQLQAEFQNVIDSISTVRKASCLSASISWNPH 180
             SLKM+ A+SDG+++V+EL++PL+LKNWQLQAEFQNVIDS+ST+ K S LSAS+SWNP 
Sbjct: 121 RKSLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPM 180

Query: 181 RGDRQQSSFVLAFSSDTPQLNSAKVWEFDQAHQRWLPVSELALAAEKGDEVYAAAWAQNI 240
           +G+ Q+ SFVLAF+SD+P LNS+K+WEFD+AH RWL V+ELAL  +KGD VYA +WA NI
Sbjct: 181 KGEEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNI 240

Query: 241 GRPYEVIAVATLKGIAIWRLGLNPDTDGRLSTERVALLSGHNGEVWEMEWDMGGMTLAST 300
           GRPYEV+AVAT KGI IW +GL PD +GRL  ++V+ LSGH GEVW+MEWDM GMTLAST
Sbjct: 241 GRPYEVVAVATHKGIGIWHVGLAPDLEGRLPVKKVSSLSGHQGEVWQMEWDMSGMTLAST 300

Query: 301 GKDGMVRLWQSNLNGVWHQHAAFEP 326
           G DGMV+LWQSNLNG WH+ A  EP
Sbjct: 301 GSDGMVKLWQSNLNGEWHEQATLEP 323

The following BLAST results are available for this feature:

BLAST of Sed0003958 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038897768.1	1.5e-172	90.21	protein SEH1 [Benincasa hispida]	[more]
KAG6600526.1	7.0e-170	88.38	Protein SEH1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547085.1	9.2e-170	88.69	protein SEH1 [Cucurbita pepo subsp. pepo]	[more]
XP_022942103.1	1.2e-169	88.38	protein SEH1 [Cucurbita moschata]	[more]
KAG7031165.1	1.6e-169	88.38	Protein SEH1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0003958 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VR9	7.6e-127	64.31	Protein SEH1 OS=Arabidopsis thaliana OX=3702 GN=SEH1 PE=1 SV=1	[more]
C1BK83	1.7e-33	30.03	Nucleoporin SEH1 OS=Osmerus mordax OX=8014 GN=seh1l PE=2 SV=1	[more]
Q6GNF1	1.6e-31	28.34	Nucleoporin SEH1-B OS=Xenopus laevis OX=8355 GN=seh1l-b PE=2 SV=1	[more]
Q96EE3	1.6e-31	28.98	Nucleoporin SEH1 OS=Homo sapiens OX=9606 GN=SEH1L PE=1 SV=3	[more]
Q4FZW5	2.1e-31	28.34	Nucleoporin SEH1-A OS=Xenopus laevis OX=8355 GN=seh1l-a PE=2 SV=1	[more]

BLAST of Sed0003958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTY0	5.8e-170	88.38	protein SEH1 OS=Cucurbita moschata OX=3662 GN=LOC111447274 PE=3 SV=1	[more]
A0A6J1J2X1	2.9e-169	88.38	protein SEH1 OS=Cucurbita maxima OX=3661 GN=LOC111480853 PE=3 SV=1	[more]
A0A1S3BTS7	1.1e-168	88.99	protein SEH1 OS=Cucumis melo OX=3656 GN=LOC103493086 PE=3 SV=1	[more]
A0A6J1C5X6	5.4e-168	88.07	protein SEH1 OS=Momordica charantia OX=3673 GN=LOC111008268 PE=3 SV=1	[more]
A0A0A0KWZ8	9.6e-165	86.85	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]

BLAST of Sed0003958 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64350.1	5.4e-128	64.31	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 1..37 e-value: 1.7 score: 15.6 coord: 98..139 e-value: 6.5 score: 11.9 coord: 271..310 e-value: 1.3E-5 score: 34.6 coord: 47..88 e-value: 1.5 score: 15.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 278..309 e-value: 0.0028 score: 18.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 278..310 score: 12.17936
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 11..324 e-value: 3.5E-46 score: 159.8
IPR037597	Nucleoporin Seh1	PANTHER	PTHR11024:SF3	NUCLEOPORIN SEH1	coord: 1..326
IPR037363	Sec13/Seh1 family	PANTHER	PTHR11024	NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER	coord: 1..326
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 278..310 score: 10.15287
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 14..311

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003958.1	Sed0003958.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034198	cellular response to amino acid starvation
biological_process	GO:1904263	positive regulation of TORC1 signaling
biological_process	GO:0015031	protein transport
cellular_component	GO:0031080	nuclear pore outer ring
cellular_component	GO:0035859	Seh1-associated complex
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005198	structural molecule activity