Sed0003944 (gene) Chayote v1

Overview


Name	Sed0003944
Type	gene
Organism	Sechium edule (Chayote v1)
Description	PLASMODESMATA CALLOSE-BINDING PROTEIN 3
Location	LG07: 35605668 .. 35607542 (-)
RNA-Seq Expression	Sed0003944
Synteny	Sed0003944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAAACTTGATGCCCTGCTCAGCTCAGCTCATTTTCCCACACCACCAACACTCTATATATATATATATACAAACCCTCAGACATTGCATCCAAATTATAAAGCCTTACCCCACAAAATTGAAATCCGAGCTTCTTGAAAATTCCCAGTTCGAAACTCCGTCGGACCATGGCCGCCGTTGTGTTCTTAGTGTATTTCCTGGCCCTATCTGGCCGATCTTGTAAGTTCCGACATGGGTTTCATTTTTTTCTTGAGATATACCCTTGTGGGTTTTCATTAATCTTTCTGGGTTTTTTTTGTTTTTGTGTCCATTTTAGACGCCAACTATTGCTTATGTAGAGATGGAGTTAGCCAACAAGTCCTTCAAAAGGCGATTGACTACGCTTGTGGATCTGGAGCTGACTGCTCTCCCATACAGTCCAATGGCGCCTGTTTTCAACCAAACACCGTTAAAGATCACTGCAATTACGCCGTTAACAGTTACTTCCAGAGAAAGGGGCAAACCCAAGGCACCTGCGACTTCTCCGGCGCCGCCACTCCCTCCGTTACCCTCACCGCCTGTAAGCCCCTCCAGAAATTACCCTTTTGCCCCTCTTCTTCACCCACCATTCCCTAATTACTTTTTTTAAAAAAAAATTTATTGCAGCTGCTCCTTCTGGTTGCGTATATCCATCCAGCCCCAGGTACTTACTTTTCTTAACTTGATTCATTTTTTTTTTTGTGGTTTTGTTCTTGCTCTGTTTCATTTGAAGCTTCAATGTGGCCATTTCTGACTGAAATTAGCGATTTAATGGACGTGGGTCTGCGTTTATTTTTCATTAGATCTAGCGAGAACATCCTATGGAGCTGATTTTGATTTAGTTTTTTTTTTTGTGGTTTTGTTCTTGCTCTGTTTGATTAGATTTTGTTGATTTTTTACTAATTGGGGCTTCAATGCGGCCATTTCTGACTGAAATTAGTGATTTAATGGAGATGGGTCTGCGTTTATTTCTTATTAGATCTAGTGACAACATTCTATGGAACTGATTTTAACCATTTGTTCTGCTGTTGTGAGCTGTCGACGATGCAGATTTTTACTCTTATCATCACCTTCTTGTCGTTTTCTTCTCCGGATTCCATGTTTCCTTTTCCACCTGTTGCCGGCATGTCGTTTATTTCTTTGTCTTACTGGGTTTTTTGTCTGTTTGTTTCGTTAAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACGACGCCGACGATGACTCCAGGAACGCCGTCGGCGATGAATCCGGGAGTGTTCGGTAACGGAATCAGCCCCAGCGGAGGCGGGTCGGGTTTCAACGACGGCAGCGCCGCCGTGGGTTTCGATGGAAACAGGAACTTAGTTTTGGCTGTGGCTTTGTCTCTGTGGCTTTCTATACTGTTGTTGCTCTAGGGATGATGGATTTGGACGGTGGATCTCGATGAGCGGTTGAGATTTGGCCACGTTTGTAGGGGAATTAAGGCGAGGAATCTAGAGGTCAAACCCTACTAGGGTTTTTTTTTGGGGGTATTTGTTATTTCTAATGTTAAATTCTTTTTTTTTTTAGTGGAAGGGAATGGGCTGATATTTGATGAATTTTGGCTGTTTGGTTGCATGTGGTTAGAATTATTTGTGTTTTAATTTGGGTGGGCTTTGTAAGGTACATTCTCCTCCATTCACTTTCATGAATATTTCGTTCCTTAATTGTTATCAATATGACATTGCCTGAGTGACAACAATCCTCAAAAGGTTGTGCATTGTTATGATATTACCCATTTTTTATTTTCTTACTCTATTATAGTAGAGTAAAACTCTTTTGGTGTGATGTGATTGCTATTTAGTGTCAGAGATGTTCATTTTTCCGCCGA

mRNA sequence

CACAAAACTTGATGCCCTGCTCAGCTCAGCTCATTTTCCCACACCACCAACACTCTATATATATATATATACAAACCCTCAGACATTGCATCCAAATTATAAAGCCTTACCCCACAAAATTGAAATCCGAGCTTCTTGAAAATTCCCAGTTCGAAACTCCGTCGGACCATGGCCGCCGTTGTGTTCTTAGTGTATTTCCTGGCCCTATCTGGCCGATCTTACGCCAACTATTGCTTATGTAGAGATGGAGTTAGCCAACAAGTCCTTCAAAAGGCGATTGACTACGCTTGTGGATCTGGAGCTGACTGCTCTCCCATACAGTCCAATGGCGCCTGTTTTCAACCAAACACCGTTAAAGATCACTGCAATTACGCCGTTAACAGTTACTTCCAGAGAAAGGGGCAAACCCAAGGCACCTGCGACTTCTCCGGCGCCGCCACTCCCTCCGTTACCCTCACCGCCTCTGCTCCTTCTGGTTGCGTATATCCATCCAGCCCCAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACGACGCCGACGATGACTCCAGGAACGCCGTCGGCGATGAATCCGGGAGTGTTCGGTAACGGAATCAGCCCCAGCGGAGGCGGGTCGGGTTTCAACGACGGCAGCGCCGCCGTGGGTTTCGATGGAAACAGGAACTTAGTTTTGGCTGTGGCTTTGTCTCTGTGGCTTTCTATACTGTTGTTGCTCTAGGGATGATGGATTTGGACGGTGGATCTCGATGAGCGGTTGAGATTTGGCCACGTTTGTAGGGGAATTAAGGCGAGGAATCTAGAGGTCAAACCCTACTAGGGTTTTTTTTTGGGGGTATTTGTTATTTCTAATGTTAAATTCTTTTTTTTTTTAGTGGAAGGGAATGGGCTGATATTTGATGAATTTTGGCTGTTTGGTTGCATGTGGTTAGAATTATTTGTGTTTTAATTTGGGTGGGCTTTGTAAGGTACATTCTCCTCCATTCACTTTCATGAATATTTCGTTCCTTAATTGTTATCAATATGACATTGCCTGAGTGACAACAATCCTCAAAAGGTTGTGCATTGTTATGATATTACCCATTTTTTATTTTCTTACTCTATTATAGTAGAGTAAAACTCTTTTGGTGTGATGTGATTGCTATTTAGTGTCAGAGATGTTCATTTTTCCGCCGA

Coding sequence (CDS)

ATGGCCGCCGTTGTGTTCTTAGTGTATTTCCTGGCCCTATCTGGCCGATCTTACGCCAACTATTGCTTATGTAGAGATGGAGTTAGCCAACAAGTCCTTCAAAAGGCGATTGACTACGCTTGTGGATCTGGAGCTGACTGCTCTCCCATACAGTCCAATGGCGCCTGTTTTCAACCAAACACCGTTAAAGATCACTGCAATTACGCCGTTAACAGTTACTTCCAGAGAAAGGGGCAAACCCAAGGCACCTGCGACTTCTCCGGCGCCGCCACTCCCTCCGTTACCCTCACCGCCTCTGCTCCTTCTGGTTGCGTATATCCATCCAGCCCCAGCAATGCGGGAACCTCGCCGACGAACTCCGGCGGAACGACGCCGACGATGACTCCAGGAACGCCGTCGGCGATGAATCCGGGAGTGTTCGGTAACGGAATCAGCCCCAGCGGAGGCGGGTCGGGTTTCAACGACGGCAGCGCCGCCGTGGGTTTCGATGGAAACAGGAACTTAGTTTTGGCTGTGGCTTTGTCTCTGTGGCTTTCTATACTGTTGTTGCTCTAG

Protein sequence

MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPNTVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNSGGTTPTMTPGTPSAMNPGVFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSLWLSILLLL

Homology

[Close]

BLAST of Sed0003944 vs. NCBI nr
Match: XP_038892199.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida])

HSP 1 Score: 304.3 bits (778), Expect = 7.2e-79
Identity = 155/187 (82.89%), Postives = 168/187 (89.84%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA +VFLV+FLAL+GRSYANYCLC+DGV QQ LQKA+DYACG+GADCSPI S+GACFQPN
Sbjct: 1   MAVLVFLVFFLALTGRSYANYCLCKDGVGQQALQKALDYACGAGADCSPILSSGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHCNYAVNSYFQRKGQ QG+CDF+GAATPSVTLTAS  SGCVYPSSPSNAGTSPTNS
Sbjct: 61  TVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASVTSGCVYPSSPSNAGTSPTNS 120

Query: 121 GGTTPTMTPGTPSAMNPG----VFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSL 180
           GGTTPTMTPGTPS  NPG    VFGNGISPSG GSGFNDGS  VGF+ NRNL+LAV L+L
Sbjct: 121 GGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGFNDGSGGVGFNENRNLLLAVGLTL 180

Query: 181 WLSILLL 184
           WLS+L L
Sbjct: 181 WLSVLFL 187

[Close]

BLAST of Sed0003944 vs. NCBI nr
Match: XP_004135148.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 2.7e-78
Identity = 155/187 (82.89%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VF V+FLAL+GRSYANYCLCRDGV Q  LQKA+DYACG+GADCS I S+GACFQPN
Sbjct: 1   MAVFVFFVFFLALTGRSYANYCLCRDGVGQSALQKALDYACGAGADCSSILSSGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHCNYAVNSYFQRKGQ QG+CDF+GAATPSVTLTASAPSGCVYPSSPSNAGTSPTN 
Sbjct: 61  TVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNG 120

Query: 121 GGTTPTMTPGTPSAMNPG----VFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSL 180
           GGTTPTMTPGTPS  NPG    VFGNGISPSG GSGFNDGS  VGF+ NRNL+LAV LSL
Sbjct: 121 GGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGFNDGSGGVGFNENRNLLLAVGLSL 180

Query: 181 WLSILLL 184
           WLS+L L
Sbjct: 181 WLSVLFL 187

[Close]

BLAST of Sed0003944 vs. NCBI nr
Match: XP_008446432.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo] >KAA0034470.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa] >TYK09023.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 3.1e-74
Identity = 151/193 (78.24%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VF V+FLAL+GRS ANYCLCRDGV Q VLQKA+DYACG+GADC+ I SNGACFQPN
Sbjct: 1   MAVFVFFVFFLALTGRSCANYCLCRDGVGQSVLQKALDYACGNGADCAAILSNGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTN- 120
           TVKDHCNYAVNSYFQRKGQ QG+CDF+GAATPSVTLTAS PSGCVYPSSPSNAGTSPTN 
Sbjct: 61  TVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASVPSGCVYPSSPSNAGTSPTNG 120

Query: 121 -----SGGTTPTMTPGTPSAMNPG----VFGNGISPSGGGSGFNDGSAAVGFDGNRNLVL 180
                +GGTTPTMTPGTPS   PG    VFGNGISPSG G+GFNDGS  VGF+ NRNL+L
Sbjct: 121 GTTPTNGGTTPTMTPGTPSTTTPGMTPTVFGNGISPSGSGTGFNDGSGCVGFNENRNLLL 180

Query: 181 AVALSLWLSILLL 184
           AV L+LWLS+L L
Sbjct: 181 AVGLTLWLSVLFL 193

[Close]

BLAST of Sed0003944 vs. NCBI nr
Match: KAG7013104.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285.4 bits (729), Expect = 3.4e-73
Identity = 148/183 (80.87%), Postives = 162/183 (88.52%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VFLV+FLAL+G+SYANYCLCRDGVSQQVLQKA+DYACG+GADCSPI SNGACFQPN
Sbjct: 1   MAVFVFLVFFLALTGQSYANYCLCRDGVSQQVLQKALDYACGAGADCSPILSNGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHC+YAVNSYFQRKGQ QG+CDFSGAATPSV+LTAS PSGCVYPSSPSNAGTSPTNS
Sbjct: 61  TVKDHCSYAVNSYFQRKGQVQGSCDFSGAATPSVSLTASVPSGCVYPSSPSNAGTSPTNS 120

Query: 121 GGTTP-TMTPGTPSAMNPGVFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSLWLS 180
           GGTTP T  PG    M P VFGNGISPSG G+GFNDGS  VGF+   NL+L+V L+LWLS
Sbjct: 121 GGTTPGTTNPG----MTPTVFGNGISPSGSGAGFNDGSGGVGFNEKMNLLLSVGLTLWLS 179

Query: 181 ILL 183
           +LL
Sbjct: 181 VLL 179

[Close]

BLAST of Sed0003944 vs. NCBI nr
Match: XP_023541774.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.0 bits (728), Expect = 4.5e-73
Identity = 147/183 (80.33%), Postives = 162/183 (88.52%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VFLV+FLAL+G+SYANYCLCRDGVSQQVLQKA+DYACG+GADCSPI SNGACFQPN
Sbjct: 1   MAVFVFLVFFLALTGQSYANYCLCRDGVSQQVLQKALDYACGAGADCSPILSNGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHC+YAVNSYFQRKGQ QG+CDFSGAATPSV+LTAS PSGCVYPS+PSNAGTSPTNS
Sbjct: 61  TVKDHCSYAVNSYFQRKGQVQGSCDFSGAATPSVSLTASVPSGCVYPSNPSNAGTSPTNS 120

Query: 121 GGTTP-TMTPGTPSAMNPGVFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSLWLS 180
           GGTTP T  PG    M P VFGNGISPSG G+GFNDGS  VGF+   NL+L+V L+LWLS
Sbjct: 121 GGTTPGTTNPG----MTPSVFGNGISPSGSGAGFNDGSGGVGFNEKMNLLLSVGLTLWLS 179

Query: 181 ILL 183
           +LL
Sbjct: 181 VLL 179

[Close]

BLAST of Sed0003944 vs. ExPASy Swiss-Prot
Match: Q9FZ86 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-29
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  V ++  LA++G S   +C+C++G+S+ +LQK +DYACG+GADC PI   G CF PN
Sbjct: 1   MAVFVLVMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPS--GCVYPSSPSNAGTS-- 120
           TVK HC+YAVNS+FQ+KGQ+ GTCDF+G A    T +AS PS   C +P+S S +GT+  
Sbjct: 61  TVKSHCSYAVNSFFQKKGQSLGTCDFAGTA----TFSASDPSYTTCPFPASASGSGTTTP 120

Query: 121 -PTNSGGTTPTMTPGTPSAMNPGVFGNGISPSGGGSGFNDGS 158
             T      PT T   P  + P   G    PSG    + D S
Sbjct: 121 VTTTPSTRVPTTTNTRPYTITPSTGGGLGIPSGINPDYTDPS 158

[Close]

BLAST of Sed0003944 vs. ExPASy Swiss-Prot
Match: Q9FNQ2 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-27
Identity = 88/205 (42.93%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MAA+V  +  L+L+G S A++C+C+ G+S  VLQ  +DYACG+GADC+P +   +CF P+
Sbjct: 1   MAALVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPD 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPS--GCVYPSSPSNAGTSPT 120
            V+ HCNYAVNS+FQ+KGQ+ G+C+F G ATP    T S PS  GC +P+S S +  S T
Sbjct: 61  NVRSHCNYAVNSFFQKKGQSPGSCNFDGTATP----TNSDPSYTGCAFPTSASGSSGSTT 120

Query: 121 NSGGTT-----PTMT--PG----TPSAMNP--GVFGNGISPSGGGSGFN----DGSAAVG 180
            + GTT     PT T  PG    +P + NP  GVFG   +    G+G N      S+A  
Sbjct: 121 VTPGTTNPKGSPTTTTLPGSGTNSPYSGNPTNGVFGGNSTGGTTGTGINPDYTTDSSAFA 180

Query: 181 FDGNRNL---VLAVALSLWLSILLL 184
              +  L   +L +A S + S L+L
Sbjct: 181 LKNSSKLFICLLLIASSGFCSFLML 201

[Close]

BLAST of Sed0003944 vs. ExPASy Swiss-Prot
Match: Q93V72 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-26
Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           M+ ++ L   +++   S A YCLC++G ++QVLQKAIDYACG+GADC+ IQ  GAC+QPN
Sbjct: 1   MSVLLPLCLIISMFTYSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVK+HC+ AVNSY+Q+K  +  TCDF+GAA+PS T  ++A S C+  SS S    +PT  
Sbjct: 61  TVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA-SNCLTGSSSSG---TPTTG 120

Query: 121 GGTTPTMTPGTPSAMNP--GVFGNGISPSG-GGSGF-NDGSAAVG 162
             TT T T GTP+   P  G    G   SG   SGF N G+   G
Sbjct: 121 TPTTGTPTSGTPTTGTPTTGTPTTGTPTSGTPTSGFPNTGTPNTG 160

[Close]

BLAST of Sed0003944 vs. ExPASy Swiss-Prot
Match: Q9SD84 (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 69/164 (42.07%), Postives = 101/164 (61.59%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA +V  +  L ++G + A++C+C+ G+S  VLQK +DYACG+GADC+P    G+CF P+
Sbjct: 1   MAPLVLYLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPD 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
            V+ HCNYAVNS+FQ+KGQ   +C+F+G AT  +T T  + +GC +PSS S       +S
Sbjct: 61  NVRAHCNYAVNSFFQKKGQASESCNFTGTAT--LTTTDPSYTGCAFPSSASG------SS 120

Query: 121 GGTTPTMTPGTPSAMNPGVFGNGISPSGGGSGFNDGSAAVGFDG 165
           G  + T+TPG  S        N I+   GG+    G+ + G  G
Sbjct: 121 GSGSTTVTPGKNSPKG----SNSITTFPGGNSPYSGTPSTGLLG 152

[Close]

BLAST of Sed0003944 vs. ExPASy Swiss-Prot
Match: Q9FZD0 (Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At1g26450 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-21
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = 0


Query: 5   VFLVYFLALSGRSYAN--YCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPNTV 64
           V L  FL     +Y+N   C+C+D  ++  LQK ID+ACG GADC+ IQ+ GAC+QPNT+
Sbjct: 3   VLLPLFLLSFMFTYSNAAVCVCKD-ANELDLQKVIDFACGGGADCAQIQTTGACYQPNTL 62

Query: 65  KDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNSGG 124
           K+HC+ AVNSY+Q+K  T  TCDF+GAA  S T   S  S C+  SS +   T+   S G
Sbjct: 63  KNHCDVAVNSYYQKKASTGATCDFNGAAVIS-TSPPSTTSSCLSSSSSNGTPTAGYPSTG 122

Query: 125 TTPTMTPGT--PSAMN 137
            + T +PGT  PS  N
Sbjct: 123 NSTTASPGTTNPSTGN 136

[Close]

BLAST of Sed0003944 vs. ExPASy TrEMBL
Match: A0A0A0KQT6 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G606660 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.3e-78
Identity = 155/187 (82.89%), Postives = 165/187 (88.24%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VF V+FLAL+GRSYANYCLCRDGV Q  LQKA+DYACG+GADCS I S+GACFQPN
Sbjct: 1   MAVFVFFVFFLALTGRSYANYCLCRDGVGQSALQKALDYACGAGADCSSILSSGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHCNYAVNSYFQRKGQ QG+CDF+GAATPSVTLTASAPSGCVYPSSPSNAGTSPTN 
Sbjct: 61  TVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNG 120

Query: 121 GGTTPTMTPGTPSAMNPG----VFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSL 180
           GGTTPTMTPGTPS  NPG    VFGNGISPSG GSGFNDGS  VGF+ NRNL+LAV LSL
Sbjct: 121 GGTTPTMTPGTPSTTNPGMTPTVFGNGISPSGSGSGFNDGSGGVGFNENRNLLLAVGLSL 180

Query: 181 WLSILLL 184
           WLS+L L
Sbjct: 181 WLSVLFL 187

[Close]

BLAST of Sed0003944 vs. ExPASy TrEMBL
Match: A0A5A7SU26 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00090 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 151/193 (78.24%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VF V+FLAL+GRS ANYCLCRDGV Q VLQKA+DYACG+GADC+ I SNGACFQPN
Sbjct: 1   MAVFVFFVFFLALTGRSCANYCLCRDGVGQSVLQKALDYACGNGADCAAILSNGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTN- 120
           TVKDHCNYAVNSYFQRKGQ QG+CDF+GAATPSVTLTAS PSGCVYPSSPSNAGTSPTN 
Sbjct: 61  TVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASVPSGCVYPSSPSNAGTSPTNG 120

Query: 121 -----SGGTTPTMTPGTPSAMNPG----VFGNGISPSGGGSGFNDGSAAVGFDGNRNLVL 180
                +GGTTPTMTPGTPS   PG    VFGNGISPSG G+GFNDGS  VGF+ NRNL+L
Sbjct: 121 GTTPTNGGTTPTMTPGTPSTTTPGMTPTVFGNGISPSGSGTGFNDGSGCVGFNENRNLLL 180

Query: 181 AVALSLWLSILLL 184
           AV L+LWLS+L L
Sbjct: 181 AVGLTLWLSVLFL 193

[Close]

BLAST of Sed0003944 vs. ExPASy TrEMBL
Match: A0A1S3BF20 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103489181 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 151/193 (78.24%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VF V+FLAL+GRS ANYCLCRDGV Q VLQKA+DYACG+GADC+ I SNGACFQPN
Sbjct: 1   MAVFVFFVFFLALTGRSCANYCLCRDGVGQSVLQKALDYACGNGADCAAILSNGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTN- 120
           TVKDHCNYAVNSYFQRKGQ QG+CDF+GAATPSVTLTAS PSGCVYPSSPSNAGTSPTN 
Sbjct: 61  TVKDHCNYAVNSYFQRKGQVQGSCDFNGAATPSVTLTASVPSGCVYPSSPSNAGTSPTNG 120

Query: 121 -----SGGTTPTMTPGTPSAMNPG----VFGNGISPSGGGSGFNDGSAAVGFDGNRNLVL 180
                +GGTTPTMTPGTPS   PG    VFGNGISPSG G+GFNDGS  VGF+ NRNL+L
Sbjct: 121 GTTPTNGGTTPTMTPGTPSTTTPGMTPTVFGNGISPSGSGTGFNDGSGCVGFNENRNLLL 180

Query: 181 AVALSLWLSILLL 184
           AV L+LWLS+L L
Sbjct: 181 AVGLTLWLSVLFL 193

[Close]

BLAST of Sed0003944 vs. ExPASy TrEMBL
Match: A0A6J1G024 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita moschata OX=3662 GN=LOC111449448 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 6.3e-73
Identity = 147/183 (80.33%), Postives = 162/183 (88.52%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VFLV+FLAL+G+SYANYCLCRDGVSQQVLQKA+DYACG+GADCSPI S+GACFQPN
Sbjct: 1   MAVFVFLVFFLALTGQSYANYCLCRDGVSQQVLQKALDYACGAGADCSPILSSGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHC+YAVNSYFQRKGQ QG+CDFSGAATPSV+LTAS PSGCVYPSSPSNAGTSPTNS
Sbjct: 61  TVKDHCSYAVNSYFQRKGQVQGSCDFSGAATPSVSLTASVPSGCVYPSSPSNAGTSPTNS 120

Query: 121 GGTTP-TMTPGTPSAMNPGVFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSLWLS 180
           GGTTP T  PG    M P VFGNGISPSG G+GFNDGS  VGF+   NL+L+V L+LWLS
Sbjct: 121 GGTTPGTTNPG----MTPTVFGNGISPSGSGAGFNDGSGGVGFNEKMNLLLSVGLTLWLS 179

Query: 181 ILL 183
           +LL
Sbjct: 181 VLL 179

[Close]

BLAST of Sed0003944 vs. ExPASy TrEMBL
Match: A0A6J1HZW3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita maxima OX=3661 GN=LOC111467729 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 146/183 (79.78%), Postives = 161/183 (87.98%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  VFLV+FLAL+G+SYANYCLCRDGVSQQVLQKA+DYACG+GADCSPI SNGACFQPN
Sbjct: 1   MAVFVFLVFFLALTGQSYANYCLCRDGVSQQVLQKALDYACGAGADCSPILSNGACFQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVKDHC+YAVNSYFQRKGQ QG+CDFSGAATPSV+LTAS PSGCVYPS+PSNAGTSPT S
Sbjct: 61  TVKDHCSYAVNSYFQRKGQVQGSCDFSGAATPSVSLTASVPSGCVYPSNPSNAGTSPTTS 120

Query: 121 GGTTP-TMTPGTPSAMNPGVFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSLWLS 180
           GGTTP T  PG    M P VFGNGISPSG G+GFNDGS  VGF+   NL+L+V L+LWLS
Sbjct: 121 GGTTPGTTNPG----MTPSVFGNGISPSGSGAGFNDGSGGVGFNEKMNLLLSVGLTLWLS 179

Query: 181 ILL 183
           +LL
Sbjct: 181 VLL 179

[Close]

BLAST of Sed0003944 vs. TAIR 10
Match: AT2G03505.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           M  ++ L++ LAL+  S A YCLCRDGV ++ LQ +IDYACG   DC+PI   G C+QPN
Sbjct: 1   MRLLLSLLFLLALTTYSSATYCLCRDGVGEKDLQTSIDYACGVLKDCNPIHEKGPCYQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           T+K HC++AVN+YFQR GQ  G+C+FSG AT S  L ++  +GC+YPSSP +AGT+PT  
Sbjct: 61  TIKSHCDWAVNTYFQRFGQISGSCNFSGTATTSQNLPSTVVTGCLYPSSPGSAGTTPTT- 120

Query: 121 GGTTPTMTPGTPSAMN--PGVFGNGISPSGGGSGFNDGSAAVGFDGNRNLVLAVALSLWL 180
                    GTPS     PG       P+ G +G  D S   G +G  +L +++ALSL  
Sbjct: 121 ---------GTPSGTQTFPG------PPAFGPAGDFDPS---GNNGAPSLFISIALSLGF 165

Query: 181 SILL 183
           S+++
Sbjct: 181 SVVI 165

[Close]

BLAST of Sed0003944 vs. TAIR 10
Match: AT1G13830.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 134.4 bits (337), Expect = 9.1e-32
Identity = 84/192 (43.75%), Postives = 116/192 (60.42%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           M  ++ L+  L+L+  S A YCLC+DG+    LQ +IDYACG+ ADC+PI   G C+QP+
Sbjct: 1   MKVLLGLLLLLSLTNSSSAIYCLCKDGIGDTELQTSIDYACGTLADCNPIHDKGTCYQPD 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSN-------- 120
           T+K HC++AVNSYFQ   Q  G+C+FSG AT +    ++  +GC+YPSSPS+        
Sbjct: 61  TIKSHCDWAVNSYFQNAAQVPGSCNFSGTATTNPNPPSNLANGCIYPSSPSSTRSPPSTT 120

Query: 121 --AGTSPTNSGGTTP---TMTPGTPSAMNPGVFG-NGI-SPSGGGSGFNDGSAAVGFDGN 178
              GT+PTN  GTTP   T  PGTP    P VFG  G+ +PS  GS    G++++G    
Sbjct: 121 PPTGTTPTN--GTTPFPGTPFPGTPFPGTPPVFGPTGVFNPSNPGS----GASSLGTSSV 180

[Close]

BLAST of Sed0003944 vs. TAIR 10
Match: AT1G18650.1 (plasmodesmata callose-binding protein 3 )

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-30
Identity = 75/162 (46.30%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MA  V ++  LA++G S   +C+C++G+S+ +LQK +DYACG+GADC PI   G CF PN
Sbjct: 1   MAVFVLVMILLAMAGHSSGTWCVCKEGLSEAMLQKTLDYACGAGADCGPIHQTGPCFNPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPS--GCVYPSSPSNAGTS-- 120
           TVK HC+YAVNS+FQ+KGQ+ GTCDF+G A    T +AS PS   C +P+S S +GT+  
Sbjct: 61  TVKSHCSYAVNSFFQKKGQSLGTCDFAGTA----TFSASDPSYTTCPFPASASGSGTTTP 120

Query: 121 -PTNSGGTTPTMTPGTPSAMNPGVFGNGISPSGGGSGFNDGS 158
             T      PT T   P  + P   G    PSG    + D S
Sbjct: 121 VTTTPSTRVPTTTNTRPYTITPSTGGGLGIPSGINPDYTDPS 158

[Close]

BLAST of Sed0003944 vs. TAIR 10
Match: AT5G61130.1 (plasmodesmata callose-binding protein 1 )

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-28
Identity = 88/205 (42.93%), Postives = 123/205 (60.00%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           MAA+V  +  L+L+G S A++C+C+ G+S  VLQ  +DYACG+GADC+P +   +CF P+
Sbjct: 1   MAALVLSLLLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPD 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPS--GCVYPSSPSNAGTSPT 120
            V+ HCNYAVNS+FQ+KGQ+ G+C+F G ATP    T S PS  GC +P+S S +  S T
Sbjct: 61  NVRSHCNYAVNSFFQKKGQSPGSCNFDGTATP----TNSDPSYTGCAFPTSASGSSGSTT 120

Query: 121 NSGGTT-----PTMT--PG----TPSAMNP--GVFGNGISPSGGGSGFN----DGSAAVG 180
            + GTT     PT T  PG    +P + NP  GVFG   +    G+G N      S+A  
Sbjct: 121 VTPGTTNPKGSPTTTTLPGSGTNSPYSGNPTNGVFGGNSTGGTTGTGINPDYTTDSSAFA 180

Query: 181 FDGNRNL---VLAVALSLWLSILLL 184
              +  L   +L +A S + S L+L
Sbjct: 181 LKNSSKLFICLLLIASSGFCSFLML 201

[Close]

BLAST of Sed0003944 vs. TAIR 10
Match: AT1G69295.1 (plasmodesmata callose-binding protein 4 )

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-28
Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 0


Query: 1   MAAVVFLVYFLALSGRSYANYCLCRDGVSQQVLQKAIDYACGSGADCSPIQSNGACFQPN 60
           M+ ++ L   +++   S A YCLC++G ++QVLQKAIDYACG+GADC+ IQ  GAC+QPN
Sbjct: 1   MSVLLPLCLIISMFTYSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPN 60

Query: 61  TVKDHCNYAVNSYFQRKGQTQGTCDFSGAATPSVTLTASAPSGCVYPSSPSNAGTSPTNS 120
           TVK+HC+ AVNSY+Q+K  +  TCDF+GAA+PS T  ++A S C+  SS S    +PT  
Sbjct: 61  TVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA-SNCLTGSSSSG---TPTTG 120

Query: 121 GGTTPTMTPGTPSAMNP--GVFGNGISPSG-GGSGF-NDGSAAVG 162
             TT T T GTP+   P  G    G   SG   SGF N G+   G
Sbjct: 121 TPTTGTPTSGTPTTGTPTTGTPTTGTPTSGTPTSGFPNTGTPNTG 160

The following BLAST results are available for this feature:

BLAST of Sed0003944 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892199.1	7.2e-79	82.89	PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Benincasa hispida]	[more]
XP_004135148.1	2.7e-78	82.89	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus]	[more]
XP_008446432.1	3.1e-74	78.24	PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo] >KAA0034470.1 ...	[more]
KAG7013104.1	3.4e-73	80.87	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_023541774.1	4.5e-73	80.33	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0003944 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ86	2.4e-29	46.30	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana OX=3702 GN=PDCB3...	[more]
Q9FNQ2	2.3e-27	42.93	PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana OX=3702 GN=PDCB1...	[more]
Q93V72	1.1e-26	49.09	PLASMODESMATA CALLOSE-BINDING PROTEIN 4 OS=Arabidopsis thaliana OX=3702 GN=PDCB4...	[more]
Q9SD84	1.9e-26	42.07	PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana OX=3702 GN=PDCB2...	[more]
Q9FZD0	1.1e-21	47.79	Carbohydrate-binding X8 domain-containing protein OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0003944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQT6	1.3e-78	82.89	X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G606660 PE=4 SV=...	[more]
A0A5A7SU26	1.5e-74	78.24	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BF20	1.5e-74	78.24	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103489181 ...	[more]
A0A6J1G024	6.3e-73	80.33	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HZW3	1.1e-72	79.78	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucurbita maxima OX=3661 GN=LOC111467...	[more]

BLAST of Sed0003944 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03505.1	1.7e-33	46.20	Carbohydrate-binding X8 domain superfamily protein	[more]
AT1G13830.1	9.1e-32	43.75	Carbohydrate-binding X8 domain superfamily protein	[more]
AT1G18650.1	1.7e-30	46.30	plasmodesmata callose-binding protein 3	[more]
AT5G61130.1	1.6e-28	42.93	plasmodesmata callose-binding protein 1	[more]
AT1G69295.1	8.0e-28	49.09	plasmodesmata callose-binding protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012946	X8 domain	SMART	SM00768	X8_cls	coord: 20..106 e-value: 1.1E-35 score: 134.5
IPR012946	X8 domain	PFAM	PF07983	X8	coord: 21..91 e-value: 1.2E-20 score: 73.9
None	No IPR available	GENE3D	1.20.58.1040		coord: 17..111 e-value: 3.7E-10 score: 42.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..131
None	No IPR available	PANTHER	PTHR31044:SF88	CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN	coord: 1..154
IPR044788	Carbohydrate-binding X8 domain-containing protein, plant	PANTHER	PTHR31044	BETA-1,3 GLUCANASE	coord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003944.1	Sed0003944.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0009506	plasmodesma