Sed0003827 (gene) Chayote v1

Overview


Name	Sed0003827
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Precursor of CEP3
Location	LG10: 4248185 .. 4248647 (-)
RNA-Seq Expression	Sed0003827
Synteny	Sed0003827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAAATCTTTCTTCTCTTAAACCCTCCTTCTTTCTTCTCTCTTTTATTTGAAATGGCCACTCGATTTTTGACATATTTTTTTGTACTCGTAATTTTATCTCACCAACTTGTTCCAATGGAAGGAATTAGGACACTGAAAACAAAGAAAATTGAGCTACGCTGTGGGGCTCATTGCATGAGTCCTCCCACTGCAAATATGATCATAACAAAATCAACCATCAAAACCAACAACAAGAAGCTGCACCACAGTGCTGCCATGGGGTTCGTCGATGCATTCCGCCCGACCTCGCCCGGCCACAGCCCCGGCGTTGGCCACTCCATTCAAAACTGATCATGACCACCTTAATCCACCTTTCCTAATTTCATTTTCTTGTCTCAAGTGTAACGCCTTGTGTGTTTTTCATGTGCTTGTCTATGTTTGTTTTGTAACGTATTTTCCTTTTCATTTTCTTGGTAATTTTA

mRNA sequence

TACAAATCTTTCTTCTCTTAAACCCTCCTTCTTTCTTCTCTCTTTTATTTGAAATGGCCACTCGATTTTTGACATATTTTTTTGTACTCGTAATTTTATCTCACCAACTTGTTCCAATGGAAGGAATTAGGACACTGAAAACAAAGAAAATTGAGCTACGCTGTGGGGCTCATTGCATGAGTCCTCCCACTGCAAATATGATCATAACAAAATCAACCATCAAAACCAACAACAAGAAGCTGCACCACAGTGCTGCCATGGGGTTCGTCGATGCATTCCGCCCGACCTCGCCCGGCCACAGCCCCGGCGTTGGCCACTCCATTCAAAACTGATCATGACCACCTTAATCCACCTTTCCTAATTTCATTTTCTTGTCTCAAGTGTAACGCCTTGTGTGTTTTTCATGTGCTTGTCTATGTTTGTTTTGTAACGTATTTTCCTTTTCATTTTCTTGGTAATTTTA

Coding sequence (CDS)

ATGGCCACTCGATTTTTGACATATTTTTTTGTACTCGTAATTTTATCTCACCAACTTGTTCCAATGGAAGGAATTAGGACACTGAAAACAAAGAAAATTGAGCTACGCTGTGGGGCTCATTGCATGAGTCCTCCCACTGCAAATATGATCATAACAAAATCAACCATCAAAACCAACAACAAGAAGCTGCACCACAGTGCTGCCATGGGGTTCGTCGATGCATTCCGCCCGACCTCGCCCGGCCACAGCCCCGGCGTTGGCCACTCCATTCAAAACTGA

Protein sequence

MATRFLTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKSTIKTNNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN

Homology

[Close]

BLAST of Sed0003827 vs. NCBI nr
Match: KGN48514.1 (hypothetical protein Csa_002922 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.8e-20
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2  ATRFLTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKS---TIKT 61
          ATR LTYFF+ +ILSH LV +EG R LK KK  LRCG  CM+P T    ITKS     K+
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEG-RRLKVKKNGLRCGT-CMTPTTPK-TITKSEEEAQKS 62

Query: 62 NNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
           N KLHH  A G+VDAFRPT+PGHSPGVGHSIQN
Sbjct: 63 TNNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Sed0003827 vs. NCBI nr
Match: TYK12898.1 (hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 8.4e-20
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2  ATRFLTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKS---TIKT 61
          ATR LTYFF+ +ILSH LV +EG R LK  K  LRCG  CM+P T    ITKS     K+
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEG-RRLKVNKKGLRCGT-CMTPTTPK-TITKSGEEAQKS 62

Query: 62 NNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
           NKKLHH  A G+VDAFRPT+PGHSPGVGHSIQN
Sbjct: 63 INKKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Sed0003827 vs. NCBI nr
Match: KAG6604188.1 (Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-15
Identity = 52/92 (56.52%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1  MATRFLTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKSTIKTNN 60
          MAT FLTYFF  +ILSHQLV +E  R+LK   I         +    N I   +    N 
Sbjct: 1  MATHFLTYFFAFLILSHQLVLIEA-RSLKVNSINPDTPKTITNSEPQNSI---NNDAKNT 60

Query: 61 KKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
          KKLHH  A GFVDAFRPT+PGHSPGVGHSIQN
Sbjct: 61 KKLHHRIADGFVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of Sed0003827 vs. NCBI nr
Match: KAG2719845.1 (hypothetical protein I3760_02G010000 [Carya illinoinensis])

HSP 1 Score: 67.0 bits (162), Expect = 9.6e-08
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 9   FFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITK-STIKTNNKKLH--- 68
           FF+++I  H+L+ +E  R ++ KK  LRC A C  P T  +  T+      +   LH   
Sbjct: 16  FFLMIIFCHELLSIEA-RNVEPKKKYLRC-AGCSRPDTKGIASTQPRKFVASPSHLHLDG 75

Query: 69  --HSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
              +  +GFV+AFRPTSPGHSPGVGHSI N
Sbjct: 76  TKTTTIIGFVEAFRPTSPGHSPGVGHSIHN 103

[Close]

BLAST of Sed0003827 vs. NCBI nr
Match: KAG6663182.1 (hypothetical protein CIPAW_02G009300 [Carya illinoinensis])

HSP 1 Score: 67.0 bits (162), Expect = 9.6e-08
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 9   FFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITK-STIKTNNKKLH--- 68
           FF+++I  H+L+ +E  R ++ KK  LRC A C  P T  +  T+      +   LH   
Sbjct: 16  FFLMIIFCHELLSIEA-RNVEPKKKYLRC-AGCSRPDTKGIASTQPRKFVASPSHLHLDG 75

Query: 69  --HSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
              +  +GFV+AFRPTSPGHSPGVGHSI N
Sbjct: 76  TETTTIIGFVEAFRPTSPGHSPGVGHSIHN 103

[Close]

BLAST of Sed0003827 vs. ExPASy Swiss-Prot
Match: P0DN97 (Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 24/83 (28.92%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 6  LTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKSTIKTNNKKLHH 65
          ++   + +++SH+++P E  R L+T +  ++     +      +     ++KT+  K  H
Sbjct: 11 ISLLIIAILVSHEIIPTEA-RHLRTHRKSIKNSTLTVHEGAGGLRTGGGSVKTDISKEEH 70

Query: 66 SAAMGFVDAFRPTSPGHSPGVGH 89
                VD FRPT+PG+SPG+GH
Sbjct: 71 G-----VDEFRPTTPGNSPGIGH 87

[Close]

BLAST of Sed0003827 vs. ExPASy Swiss-Prot
Match: O80460 (Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.9e-04
Identity = 33/97 (34.02%), Postives = 45/97 (46.39%), Query Frame = 0


Query: 1  MATRFLTYFFVLVILSHQLVPMEGIRTLK---TKKIELRCGAHCM--SPPTANMIITKST 60
          MAT  +  F  + +L+  +  +EG +  K   T   E+R G   +  SPPT  +      
Sbjct: 1  MATINVYVFAFIFLLTISVGSIEGRKLTKFTVTTSEEIRAGGSVLSSSPPTEPL------ 60

Query: 61 IKTNNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
                    S     VD FRPT PGHSPG+GHS+ N
Sbjct: 61 ---------ESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Sed0003827 vs. ExPASy TrEMBL
Match: A0A0A0KIB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.8e-20
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2  ATRFLTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKS---TIKT 61
          ATR LTYFF+ +ILSH LV +EG R LK KK  LRCG  CM+P T    ITKS     K+
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEG-RRLKVKKNGLRCGT-CMTPTTPK-TITKSEEEAQKS 62

Query: 62 NNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
           N KLHH  A G+VDAFRPT+PGHSPGVGHSIQN
Sbjct: 63 TNNKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Sed0003827 vs. ExPASy TrEMBL
Match: A0A5D3CP07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004920 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 61/94 (64.89%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 2  ATRFLTYFFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKS---TIKT 61
          ATR LTYFF+ +ILSH LV +EG R LK  K  LRCG  CM+P T    ITKS     K+
Sbjct: 3  ATRVLTYFFLFIILSHHLVVIEG-RRLKVNKKGLRCGT-CMTPTTPK-TITKSGEEAQKS 62

Query: 62 NNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
           NKKLHH  A G+VDAFRPT+PGHSPGVGHSIQN
Sbjct: 63 INKKLHHRIADGYVDAFRPTTPGHSPGVGHSIQN 93

[Close]

BLAST of Sed0003827 vs. ExPASy TrEMBL
Match: A0A7N2M1D5 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 9  FFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITK--------STIKTNN 68
          FF+L+IL H+L+ +EG R L  +K +L C A C+SP T   I TK        S+ KT N
Sbjct: 10 FFLLIILCHELLCIEG-RNLNPRK-KLEC-AKCLSPNTKG-IATKPRKIAASPSSAKTTN 69

Query: 69 KKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
                    +VDAFRPT+PGHSPGVGHSIQN
Sbjct: 70 ---------DYVDAFRPTTPGHSPGVGHSIQN 88

[Close]

BLAST of Sed0003827 vs. ExPASy TrEMBL
Match: A0A067GI40 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045305mg PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.9e-08
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 9  FFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKSTIKTNN-----KKL 68
          FF+L+I SH+L  +EG R LK  K  L+C A C+  P            TNN       L
Sbjct: 10 FFILMIFSHELCDVEG-RNLKISK-SLKC-AKCLLSPDGQSKFKPIARDTNNHDASPSLL 69

Query: 69 HH--SAAMGFVDAFRPTSPGHSPGVGH 89
          HH      GFVDAFRPT+PGHSPGVGH
Sbjct: 70 HHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Sed0003827 vs. ExPASy TrEMBL
Match: V4SPP4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 9  FFVLVILSHQLVPMEGIRTLKTKKIELRCGAHCMSPPTANMIITKSTIKTNN-----KKL 68
          FF+L+I SH+L  +EG R LK  K  L+C A C+  P            TNN       L
Sbjct: 10 FFILMIFSHELCDVEG-RNLKISK-SLKC-AKCLLSPDGQSKSKPIARDTNNHDASPSLL 69

Query: 69 HH--SAAMGFVDAFRPTSPGHSPGVGH 89
          HH      GFVDAFRPT+PGHSPGVGH
Sbjct: 70 HHGTKTTEGFVDAFRPTTPGHSPGVGH 93

[Close]

BLAST of Sed0003827 vs. TAIR 10
Match: AT2G23440.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 25 Blast hits to 25 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.8e-05
Identity = 33/97 (34.02%), Postives = 45/97 (46.39%), Query Frame = 0


Query: 1  MATRFLTYFFVLVILSHQLVPMEGIRTLK---TKKIELRCGAHCM--SPPTANMIITKST 60
          MAT  +  F  + +L+  +  +EG +  K   T   E+R G   +  SPPT  +      
Sbjct: 1  MATINVYVFAFIFLLTISVGSIEGRKLTKFTVTTSEEIRAGGSVLSSSPPTEPL------ 60

Query: 61 IKTNNKKLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
                    S     VD FRPT PGHSPG+GHS+ N
Sbjct: 61 ---------ESPPSHGVDTFRPTEPGHSPGIGHSVHN 82

[Close]

BLAST of Sed0003827 vs. TAIR 10
Match: AT5G66816.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 0


Query: 62 KLHHSAAMGFVDAFRPTSPGHSPGVGHSIQN 93
          K +   A G+ D F PT+PGHSPGVGH+++N
Sbjct: 66 KENEENAGGYKDDFEPTTPGHSPGVGHAVKN 96

The following BLAST results are available for this feature:

BLAST of Sed0003827 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48514.1	3.8e-20	64.89	hypothetical protein Csa_002922 [Cucumis sativus]	[more]
TYK12898.1	8.4e-20	64.89	hypothetical protein E5676_scaffold255G004920 [Cucumis melo var. makuwa]	[more]
KAG6604188.1	8.1e-15	56.52	Precursor of CEP3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG2719845.1	9.6e-08	44.44	hypothetical protein I3760_02G010000 [Carya illinoinensis]	[more]
KAG6663182.1	9.6e-08	44.44	hypothetical protein CIPAW_02G009300 [Carya illinoinensis]	[more]

BLAST of Sed0003827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DN97	1.4e-04	28.92	Precursor of CEP8 OS=Arabidopsis thaliana OX=3702 GN=CEP8 PE=2 SV=1	[more]
O80460	3.9e-04	34.02	Precursor of CEP3 OS=Arabidopsis thaliana OX=3702 GN=CEP3 PE=1 SV=1	[more]

BLAST of Sed0003827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIB5	1.8e-20	64.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490780 PE=3 SV=1	[more]
A0A5D3CP07	4.1e-20	64.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7N2M1D5	2.1e-08	50.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A067GI40	7.9e-08	48.28	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045305mg PE=3 SV=1	[more]
V4SPP4	1.4e-07	48.28	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10027106mg PE=3 ...	[more]

BLAST of Sed0003827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23440.1	2.8e-05	34.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G66816.1	1.8e-04	54.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33348:SF20	PRECURSOR OF CEP4	coord: 2..89
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 2..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003827.1	Sed0003827.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
biological_process	GO:0048364	root development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0005179	hormone activity