Sed0003821 (gene) Chayote v1

Overview


Name	Sed0003821
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Homeobox protein
Location	LG04: 5393990 .. 5395553 (+)
RNA-Seq Expression	Sed0003821
Synteny	Sed0003821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTAAGCCAAGTAACCAAATTACCAGAGTCAACTTTTCTCTCCATTAGTTTCTGCAGCACTTGTTTTATAGTTTGCATCAGTTTCAGAGCTTTCCATAATATCATACCAATACACTCACAAACCCCCATTCCAAACATCCATTTTCTTCACTTCTTCAACCAACAAGAAAGCTAGAAACGCTTGAAATTTTCAGGCTCATTTTAGAATCCCAAATGCACCAATTTCCCAATTATGGATTCTGAAACTCTGGCCTGTTTTTGGATCCAAGATTCTTGTTCCCAAGTGAAGGGAAATGGAAACAAAAGAAGGCTGACTTTGGATCAAGTTGGGTTGCTTGAGAAGAGCTTTAATGCTGGAAACAAACTTGAACATGAGAGGAAGGTTCAAATTGCAAAGGAGACTGGTTTGCGGCCTCGCCAAGTTGCAGTTTGGTTTCAGAATCGAAGAGCTCGATCAAAGTCTAAGAAAATCGAGTATGATTTTGATTCTTTGAATGCTGAATATGAGAAGCTCAAAAATGACTTTGACAGTCTTCTCAAGCTCAATCATGAGCTCAAAGTTGAGGTATGTATGGCCTCTCTGTTATGCCATAAACACTTCCGGATCTGTTTAATTATATTCTCATTCTGGGTTGGTTTTAAGTTTTACCTCAATAAATGGTATGTTTGGGTTAGATGAAAATTAATTTTCAAATTCTTTAACTTGGTAAGTTGAGATGTCTTTGAACTATGACACTCCTGCGATGTGAGCTTGGGGACAACACCCCTAAAACCTAGATGAAATATGCAATTAAGTTTATGTTTTTGTATTATGGGACTCTTTTTTTTTTATGTATTTGGTTATATTTTGTAATAGAGTTTTATAAAACTGCATTGTATGAACTTTTAAAAAATTCAAGCCCCAATTTTATCAACATTTTGTACTTTTATCTTTTAATAAAACAATTCTTTTGTCTACTCGTAAACGTAGTTAAGAAATTGTTAGTGAACCATATAAATCTTATGTTTTGTCTCGCTTTCTTTTTACTTTCTTGATTTTTGATTCTGTTTTTCCTAACACGGAGGCTGGTTTCTTACCAGGTTGATCAACTAAGAGAAAAATGGAGTGCTAGTGAGAAGATGAAGAATCCTTTTGGACCAGTTGAACTTGAAGCCATGGATTCATTAGTTACAGAACTTGGAATATTAAAAGAAAAAGCAATGAGTGAAAATTTGTACAAGGAAGATCAGGGCAGCAGAAGTTCAAGCAAAAGCGATGATTTTTATTCTGAAAGCCCCACCAGGGAAAACCAGTCACAGTTAGATAATCTTTTGCAACGTGAATTAGGCTACTTGAAGAATGAACTTTCAGGTGATGAATTCATGGATCCCTTTAATATTATCTCTGGTGTTGTTGAAGATCAATCTTTCTGTTTCTTGTCTTACTGATTTGAAGTTAAATTCTCAGTTAAATGTTTCAGTGTACTGTAACTTAGTAATAAAAGATATCAAGTGATGAATAAATATATTACTATCACTTCTACTCTGAGCACTTAAAAAACCAGCAAAAGCATTCAAAGGCAA

mRNA sequence

AAGTAAGCCAAGTAACCAAATTACCAGAGTCAACTTTTCTCTCCATTAGTTTCTGCAGCACTTGTTTTATAGTTTGCATCAGTTTCAGAGCTTTCCATAATATCATACCAATACACTCACAAACCCCCATTCCAAACATCCATTTTCTTCACTTCTTCAACCAACAAGAAAGCTAGAAACGCTTGAAATTTTCAGGCTCATTTTAGAATCCCAAATGCACCAATTTCCCAATTATGGATTCTGAAACTCTGGCCTGTTTTTGGATCCAAGATTCTTGTTCCCAAGTGAAGGGAAATGGAAACAAAAGAAGGCTGACTTTGGATCAAGTTGGGTTGCTTGAGAAGAGCTTTAATGCTGGAAACAAACTTGAACATGAGAGGAAGGTTCAAATTGCAAAGGAGACTGGTTTGCGGCCTCGCCAAGTTGCAGTTTGGTTTCAGAATCGAAGAGCTCGATCAAAGTCTAAGAAAATCGAGTATGATTTTGATTCTTTGAATGCTGAATATGAGAAGCTCAAAAATGACTTTGACAGTCTTCTCAAGCTCAATCATGAGCTCAAAGTTGAGGTTGATCAACTAAGAGAAAAATGGAGTGCTAGTGAGAAGATGAAGAATCCTTTTGGACCAGTTGAACTTGAAGCCATGGATTCATTAGTTACAGAACTTGGAATATTAAAAGAAAAAGCAATGAGTGAAAATTTGTACAAGGAAGATCAGGGCAGCAGAAGTTCAAGCAAAAGCGATGATTTTTATTCTGAAAGCCCCACCAGGGAAAACCAGTCACAGTTAGATAATCTTTTGCAACGTGAATTAGGCTACTTGAAGAATGAACTTTCAGGTGATGAATTCATGGATCCCTTTAATATTATCTCTGGTGTTGTTGAAGATCAATCTTTCTGTTTCTTGTCTTACTGATTTGAAGTTAAATTCTCAGTTAAATGTTTCAGTGTACTGTAACTTAGTAATAAAAGATATCAAGTGATGAATAAATATATTACTATCACTTCTACTCTGAGCACTTAAAAAACCAGCAAAAGCATTCAAAGGCAA

Coding sequence (CDS)

ATGGATTCTGAAACTCTGGCCTGTTTTTGGATCCAAGATTCTTGTTCCCAAGTGAAGGGAAATGGAAACAAAAGAAGGCTGACTTTGGATCAAGTTGGGTTGCTTGAGAAGAGCTTTAATGCTGGAAACAAACTTGAACATGAGAGGAAGGTTCAAATTGCAAAGGAGACTGGTTTGCGGCCTCGCCAAGTTGCAGTTTGGTTTCAGAATCGAAGAGCTCGATCAAAGTCTAAGAAAATCGAGTATGATTTTGATTCTTTGAATGCTGAATATGAGAAGCTCAAAAATGACTTTGACAGTCTTCTCAAGCTCAATCATGAGCTCAAAGTTGAGGTTGATCAACTAAGAGAAAAATGGAGTGCTAGTGAGAAGATGAAGAATCCTTTTGGACCAGTTGAACTTGAAGCCATGGATTCATTAGTTACAGAACTTGGAATATTAAAAGAAAAAGCAATGAGTGAAAATTTGTACAAGGAAGATCAGGGCAGCAGAAGTTCAAGCAAAAGCGATGATTTTTATTCTGAAAGCCCCACCAGGGAAAACCAGTCACAGTTAGATAATCTTTTGCAACGTGAATTAGGCTACTTGAAGAATGAACTTTCAGGTGATGAATTCATGGATCCCTTTAATATTATCTCTGGTGTTGTTGAAGATCAATCTTTCTGTTTCTTGTCTTACTGA

Protein sequence

MDSETLACFWIQDSCSQVKGNGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYKEDQGSRSSSKSDDFYSESPTRENQSQLDNLLQRELGYLKNELSGDEFMDPFNIISGVVEDQSFCFLSY

Homology

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BLAST of Sed0003821 vs. NCBI nr
Match: XP_038892732.1 (homeobox-leucine zipper protein ATHB-54 [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-73
Identity = 157/242 (64.88%), Postives = 185/242 (76.45%), Query Frame = 0


Query: 2   DSETLACFWIQDSCSQVKGNGN----KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKET 61
           ++ +L CF + D CS +KG GN    KRRLT+DQV LLEK+FN   KLEHERKVQIA+E 
Sbjct: 13  EASSLPCFLVSDFCSSMKGEGNQGGKKRRLTVDQVRLLEKNFNDEIKLEHERKVQIAEEI 72

Query: 62  GLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLRE 121
           GLRPRQVAVWFQNRRARSK+K+IE D++SL+ EY+KLKNDFDSLLK+N ELK EVDQLR+
Sbjct: 73  GLRPRQVAVWFQNRRARSKTKRIESDYESLSVEYDKLKNDFDSLLKVNQELKAEVDQLRD 132

Query: 122 KWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYK-------EDQGSRSSSKSD 181
           KW+ASEK KN F PVE+EAMDS VTELG    K M+E LYK       +++GS SSSKSD
Sbjct: 133 KWAASEKKKNSFEPVEVEAMDSSVTELGKANTKTMAEILYKVQLGSYRQEEGSLSSSKSD 192

Query: 182 DFYSESPTRENQSQLDNLLQRE------LGYLKNELSGDEFMDPFNIISGVVEDQSFCFL 227
            FYSESPTRENQS+  N LQ E      LG L++ELS +E MD FNI+S  VE+QS CF 
Sbjct: 193 GFYSESPTRENQSKSGNFLQEEEDELGYLGKLEDELSANELMDSFNILSNAVENQSLCFW 252

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BLAST of Sed0003821 vs. NCBI nr
Match: XP_008446309.1 (PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 2.3e-71
Identity = 157/242 (64.88%), Postives = 182/242 (75.21%), Query Frame = 0


Query: 2   DSETLACFWIQDSCSQVKG----NGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKET 61
           ++ +L CFW+ DSCS +KG     G KRRL++DQV LLEK+FN  NKLEHERKVQIA+E 
Sbjct: 13  EASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEI 72

Query: 62  GLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLRE 121
           GLRPRQVAVWFQNRRARSK K+IE D++ LNAEY+KLK+DFDSLL +NHELK EVDQLR 
Sbjct: 73  GLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKAEVDQLRA 132

Query: 122 KWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYK--------EDQGSRSSSKS 181
           KW+A EKMKN F PV +EAM S VTEL   K K M E LY+        E +GS SSSKS
Sbjct: 133 KWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYEVQMGSSRHELEGSLSSSKS 192

Query: 182 DDFYSESPTRENQSQLDNLLQ---RELGY---LKNELSGDEFMDPFNIISGVVEDQSFCF 226
           D FYSESPTRENQS+  N LQ    ELGY   L++ELS DE M+ FNI+S  VE+QSFCF
Sbjct: 193 DCFYSESPTRENQSKSANFLQDEEDELGYLEKLEDELSADELMNSFNILSSAVENQSFCF 252

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BLAST of Sed0003821 vs. NCBI nr
Match: XP_004135200.1 (homeobox-leucine zipper protein HAT5 [Cucumis sativus] >KGN51881.1 hypothetical protein Csa_008673 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 4.4e-70
Identity = 151/242 (62.40%), Postives = 180/242 (74.38%), Query Frame = 0


Query: 2   DSETLACFWIQDSCSQVKG-----NGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKE 61
           ++ +L CFW+ DSCS +KG      G KRRL++DQV LLEK+FN  NKLEHERKVQIA+E
Sbjct: 13  EASSLPCFWVSDSCSSMKGEGTTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEE 72

Query: 62  TGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLR 121
            GLRPRQVAVWFQNRRARSK K+IE D++ L+AEY+KLK+DFDSLL +NHELK EVDQLR
Sbjct: 73  IGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNMNHELKAEVDQLR 132

Query: 122 EKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYK-------EDQGSRSSSKS 181
             W+A EKMKN F PV +EAMDS VT+L     K M E LYK        ++GS SSSKS
Sbjct: 133 TTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMGEILYKVQMGSSRHEEGSLSSSKS 192

Query: 182 DDFYSESPTRENQSQLDNLLQRE------LGYLKNELSGDEFMDPFNIISGVVEDQSFCF 226
           D FYSESPTR+NQS+  N LQ E      LG L++ELS +E M+ FNI+S  VE+QSFCF
Sbjct: 193 DGFYSESPTRDNQSKSANFLQDEEDELGCLGKLEDELSANELMNSFNILSSAVENQSFCF 252

[Close]

BLAST of Sed0003821 vs. NCBI nr
Match: XP_023537958.1 (homeobox-leucine zipper protein HOX20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 4.1e-68
Identity = 148/244 (60.66%), Postives = 176/244 (72.13%), Query Frame = 0


Query: 4   ETLACFWIQDSCSQVKG-------------NGNKRRLTLDQVGLLEKSFNAGNKLEHERK 63
           E+L   WI DSCS ++G              G KRRLTLDQV +LE++FNA NKLEHERK
Sbjct: 13  ESLPSLWISDSCSSMEGEFSQPQVKADRNRGGKKRRLTLDQVRMLERTFNAENKLEHERK 72

Query: 64  VQIAKETGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKV 123
           VQIA+E GLRPRQVAVWFQNRRARSK+KKIE D++SLNAEY+KLKNDFDSLLK+NHELK 
Sbjct: 73  VQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKA 132

Query: 124 EVDQLREKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYKEDQGSRSSSKSD 183
           EVDQLR+KW+A+EKMKNP+ PV     D    E+G            +++QGSRSSSKSD
Sbjct: 133 EVDQLRDKWAATEKMKNPYEPVG----DFYKVEMG----------SSRQEQGSRSSSKSD 192

Query: 184 DFYSESPTRENQSQLDNLLQRE--------LGYLKNELSGDEFMDPFNIISGVVEDQSFC 227
            FY+ESPTRENQS+  N L+ E        LG L++ELS DE MD FN++S   EDQSFC
Sbjct: 193 VFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDELSADELMDSFNVMSSAAEDQSFC 242

[Close]

BLAST of Sed0003821 vs. NCBI nr
Match: XP_022956848.1 (homeobox-leucine zipper protein ATHB-16-like [Cucurbita moschata])

HSP 1 Score: 265.0 bits (676), Expect = 5.9e-67
Identity = 146/244 (59.84%), Postives = 176/244 (72.13%), Query Frame = 0


Query: 4   ETLACFWIQDSCSQVKG-------------NGNKRRLTLDQVGLLEKSFNAGNKLEHERK 63
           E+L   WI DSCS ++G              G KRRLTLDQV +LE++FNA NKLEHERK
Sbjct: 13  ESLPSLWISDSCSSMEGEFSQPQAKADRNRGGKKRRLTLDQVRMLERTFNAENKLEHERK 72

Query: 64  VQIAKETGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKV 123
           VQIA+E GLRPRQVAVWFQNRRARSK+KKIE D++SLNAEY+KLKNDFDSLLK+NHELK 
Sbjct: 73  VQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKA 132

Query: 124 EVDQLREKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYKEDQGSRSSSKSD 183
           EV+QLR+KW+A+EKM NP+ PV            G L +  M  +  +++QGSRSSSKSD
Sbjct: 133 EVNQLRDKWAATEKMNNPYEPV------------GALYKVEMGSS--RQEQGSRSSSKSD 192

Query: 184 DFYSESPTRENQSQLDNLLQRE--------LGYLKNELSGDEFMDPFNIISGVVEDQSFC 227
            FY+ESPTRENQS+  N L+ E        LG L++ELS DE MD FN++S   EDQSFC
Sbjct: 193 VFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDELSADELMDSFNVMSSAAEDQSFC 242

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BLAST of Sed0003821 vs. ExPASy Swiss-Prot
Match: Q00466 (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana OX=3702 GN=HAT7 PE=2 SV=4)

HSP 1 Score: 109.4 bits (272), Expect = 5.4e-23
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 11  IQDSCSQVKGNGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQN 70
           + D  S +     K+RL L+QV  LEKSF  GNKLE ERK+Q+AK  GL+PRQ+A+WFQN
Sbjct: 103 LSDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQN 162

Query: 71  RRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLRE-KWSASEKMKNPF 130
           RRAR K+K++E D+DSL  +++ LK+D DSLL  N +L  E+  L++     S K+K  F
Sbjct: 163 RRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALKKHDRKESAKIKREF 222

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BLAST of Sed0003821 vs. ExPASy Swiss-Prot
Match: A2X980 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-23
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           KRRLT +QV LLE+SF   NKLE ERK ++A++ GL+PRQVAVWFQNRRAR K+K++E D
Sbjct: 80  KRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERD 139

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASE 124
           FD L A ++ L+ D D+LL+ NH L  +V  L EK    E
Sbjct: 140 FDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 179

[Close]

BLAST of Sed0003821 vs. ExPASy Swiss-Prot
Match: Q6YWR4 (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX16 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.3e-23
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           KRRLT +QV LLE+SF   NKLE ERK ++A++ GL+PRQVAVWFQNRRAR K+K++E D
Sbjct: 78  KRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERD 137

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASE 124
           FD L A ++ L+ D D+LL+ NH L  +V  L EK    E
Sbjct: 138 FDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKLQEKE 177

[Close]

BLAST of Sed0003821 vs. ExPASy Swiss-Prot
Match: Q8LAT0 (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana OX=3702 GN=ATHB-20 PE=1 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           K+RL L+QV  LEKSF  GNKLE ERK+Q+AK  G++PRQ+A+WFQNRRAR K++++E D
Sbjct: 88  KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERD 147

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREK 119
           +DSL  ++E LK+D  SLL  N +L  EV  L+ K
Sbjct: 148 YDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNK 182

[Close]

BLAST of Sed0003821 vs. ExPASy Swiss-Prot
Match: Q02283 (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-22
Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           KRRLT +QV LLEKSF   NKLE ERK Q+AK+ GL+PRQVAVWFQNRRAR K+K++E D
Sbjct: 69  KRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERD 128

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASEKMKN-PFGPV-ELEAMDSLV 143
           +D L + Y++L +++DS++  N +L+ EV  L EK    ++  N P G V E   +D + 
Sbjct: 129 YDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANEPPGQVPEPNQLDPVY 188

Query: 144 TELGILKEK------AMSENLYKEDQGSRSSSKSDDFYSESPTRENQSQLDN 188
                +K +      ++   +  +D      S    F S  P ++N +  D+
Sbjct: 189 INAAAIKTEDRLSSGSVGSAVLDDDAPQLLDSCDSYFPSIVPIQDNSNASDH 240

[Close]

BLAST of Sed0003821 vs. ExPASy TrEMBL
Match: A0A1S3BER7 (homeobox-leucine zipper protein ATHB-16 OS=Cucumis melo OX=3656 GN=LOC103489083 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 1.1e-71
Identity = 157/242 (64.88%), Postives = 182/242 (75.21%), Query Frame = 0


Query: 2   DSETLACFWIQDSCSQVKG----NGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKET 61
           ++ +L CFW+ DSCS +KG     G KRRL++DQV LLEK+FN  NKLEHERKVQIA+E 
Sbjct: 13  EASSLPCFWVSDSCSSMKGEGTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEEI 72

Query: 62  GLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLRE 121
           GLRPRQVAVWFQNRRARSK K+IE D++ LNAEY+KLK+DFDSLL +NHELK EVDQLR 
Sbjct: 73  GLRPRQVAVWFQNRRARSKMKRIESDYECLNAEYDKLKSDFDSLLNMNHELKAEVDQLRA 132

Query: 122 KWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYK--------EDQGSRSSSKS 181
           KW+A EKMKN F PV +EAM S VTEL   K K M E LY+        E +GS SSSKS
Sbjct: 133 KWAAMEKMKNHFEPVGVEAMVSSVTELEKAKAKTMGEILYEVQMGSSRHELEGSLSSSKS 192

Query: 182 DDFYSESPTRENQSQLDNLLQ---RELGY---LKNELSGDEFMDPFNIISGVVEDQSFCF 226
           D FYSESPTRENQS+  N LQ    ELGY   L++ELS DE M+ FNI+S  VE+QSFCF
Sbjct: 193 DCFYSESPTRENQSKSANFLQDEEDELGYLEKLEDELSADELMNSFNILSSAVENQSFCF 252

[Close]

BLAST of Sed0003821 vs. ExPASy TrEMBL
Match: A0A0A0KVU6 (Homeobox protein OS=Cucumis sativus OX=3659 GN=Csa_5G604260 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 2.1e-70
Identity = 151/242 (62.40%), Postives = 180/242 (74.38%), Query Frame = 0


Query: 2   DSETLACFWIQDSCSQVKG-----NGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKE 61
           ++ +L CFW+ DSCS +KG      G KRRL++DQV LLEK+FN  NKLEHERKVQIA+E
Sbjct: 13  EASSLPCFWVSDSCSSMKGEGTTLGGKKRRLSVDQVRLLEKNFNDENKLEHERKVQIAEE 72

Query: 62  TGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLR 121
            GLRPRQVAVWFQNRRARSK K+IE D++ L+AEY+KLK+DFDSLL +NHELK EVDQLR
Sbjct: 73  IGLRPRQVAVWFQNRRARSKMKRIESDYECLSAEYDKLKSDFDSLLNMNHELKAEVDQLR 132

Query: 122 EKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYK-------EDQGSRSSSKS 181
             W+A EKMKN F PV +EAMDS VT+L     K M E LYK        ++GS SSSKS
Sbjct: 133 TTWAAVEKMKNHFEPVGVEAMDSSVTKLEKANAKTMGEILYKVQMGSSRHEEGSLSSSKS 192

Query: 182 DDFYSESPTRENQSQLDNLLQRE------LGYLKNELSGDEFMDPFNIISGVVEDQSFCF 226
           D FYSESPTR+NQS+  N LQ E      LG L++ELS +E M+ FNI+S  VE+QSFCF
Sbjct: 193 DGFYSESPTRDNQSKSANFLQDEEDELGCLGKLEDELSANELMNSFNILSSAVENQSFCF 252

[Close]

BLAST of Sed0003821 vs. ExPASy TrEMBL
Match: A0A6J1GYD2 (homeobox-leucine zipper protein ATHB-16-like OS=Cucurbita moschata OX=3662 GN=LOC111458422 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.9e-67
Identity = 146/244 (59.84%), Postives = 176/244 (72.13%), Query Frame = 0


Query: 4   ETLACFWIQDSCSQVKG-------------NGNKRRLTLDQVGLLEKSFNAGNKLEHERK 63
           E+L   WI DSCS ++G              G KRRLTLDQV +LE++FNA NKLEHERK
Sbjct: 13  ESLPSLWISDSCSSMEGEFSQPQAKADRNRGGKKRRLTLDQVRMLERTFNAENKLEHERK 72

Query: 64  VQIAKETGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKV 123
           VQIA+E GLRPRQVAVWFQNRRARSK+KKIE D++SLNAEY+KLKNDFDSLLK+NHELK 
Sbjct: 73  VQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKA 132

Query: 124 EVDQLREKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYKEDQGSRSSSKSD 183
           EV+QLR+KW+A+EKM NP+ PV            G L +  M  +  +++QGSRSSSKSD
Sbjct: 133 EVNQLRDKWAATEKMNNPYEPV------------GALYKVEMGSS--RQEQGSRSSSKSD 192

Query: 184 DFYSESPTRENQSQLDNLLQRE--------LGYLKNELSGDEFMDPFNIISGVVEDQSFC 227
            FY+ESPTRENQS+  N L+ E        LG L++ELS DE MD FN++S   EDQSFC
Sbjct: 193 VFYAESPTRENQSRSGNFLRDEEEDDELGYLGILEDELSADELMDSFNVMSSAAEDQSFC 242

[Close]

BLAST of Sed0003821 vs. ExPASy TrEMBL
Match: A0A6J1DBJ2 (homeobox-leucine zipper protein ATHB-16 OS=Momordica charantia OX=3673 GN=LOC111019178 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.9e-66
Identity = 147/244 (60.25%), Postives = 176/244 (72.13%), Query Frame = 0


Query: 10  WIQDSCSQVKGN-------------GNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKE 69
           WI +S S ++G              G KRRLT+DQV LLE++FN  NKLEHERKVQ+A+E
Sbjct: 20  WISNSGSSMEGRFLQEQADGARNSAGKKRRLTVDQVRLLERNFNVENKLEHERKVQLAEE 79

Query: 70  TGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLR 129
            GLRPRQVAVWFQNRRARSK+KKIE D++SLNAEY KLK D+ SL+KLNH+LK E D+LR
Sbjct: 80  IGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYHKLKKDYTSLVKLNHDLKAEADELR 139

Query: 130 EKWSASEKMKNPFGP--VELEAMDSLVTELGILKEKAMSENLY-------KEDQGSRSSS 189
           EKW+A+EKM+NP  P  VE+EAMDS VTELG      M E+LY       ++++GSRSSS
Sbjct: 140 EKWAAAEKMRNPLEPVEVEVEAMDSSVTELGKPNTSTMGEDLYNVQMGSSRQEEGSRSSS 199

Query: 190 KSDDFYSESPTRENQSQLDNLLQRE------LGYLKNELSGDEFMDPFNIISGVVEDQSF 226
           KSD FYSESPT ENQSQ DN L+ E      L  L++E+  DEF+D FN IS  VEDQS 
Sbjct: 200 KSDGFYSESPTMENQSQSDNFLRDEEDELGKLVKLEDEIYADEFIDSFNFISTAVEDQSL 259

[Close]

BLAST of Sed0003821 vs. ExPASy TrEMBL
Match: A0A6J1KEP6 (homeobox-leucine zipper protein ATHB-7-like OS=Cucurbita maxima OX=3661 GN=LOC111494298 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.5e-65
Identity = 145/244 (59.43%), Postives = 175/244 (71.72%), Query Frame = 0


Query: 4   ETLACFWIQDSCSQVKG-------------NGNKRRLTLDQVGLLEKSFNAGNKLEHERK 63
           E+L   WI DSCS ++G              G KRRLTLDQV +LE++FNA +KLEHERK
Sbjct: 69  ESLPSLWISDSCSSMEGEFSQPQAKADRNRGGKKRRLTLDQVRMLERTFNAESKLEHERK 128

Query: 64  VQIAKETGLRPRQVAVWFQNRRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKV 123
           VQIA+E GLRPRQVAVWFQNRRARSK+KKIE D++SLNAEY+KLKNDFDSLLK+NHELK 
Sbjct: 129 VQIAEEIGLRPRQVAVWFQNRRARSKTKKIEIDYESLNAEYDKLKNDFDSLLKVNHELKA 188

Query: 124 EVDQLREKWSASEKMKNPFGPVELEAMDSLVTELGILKEKAMSENLYKEDQGSRSSSKSD 183
           EVDQLR+KW+A+EK  NP+ PV            G L +  M  +  +++QGSRSSSKSD
Sbjct: 189 EVDQLRDKWAATEKTNNPYEPV------------GALYKVEMGSS--RQEQGSRSSSKSD 248

Query: 184 DFYSESPTRENQSQLDNLLQ-----RELGY---LKNELSGDEFMDPFNIISGVVEDQSFC 227
            FY+ESPTRENQS+  N L+      ELGY   L++ELS DE MD FN++S   E QSFC
Sbjct: 249 VFYAESPTRENQSRSGNFLRDEEEDDELGYWGILEDELSADELMDSFNVMSSAAEYQSFC 298

[Close]

BLAST of Sed0003821 vs. TAIR 10
Match: AT5G15150.1 (homeobox 3 )

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-24
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 11  IQDSCSQVKGNGNKRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQN 70
           + D  S +     K+RL L+QV  LEKSF  GNKLE ERK+Q+AK  GL+PRQ+A+WFQN
Sbjct: 103 LSDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQN 162

Query: 71  RRARSKSKKIEYDFDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLRE-KWSASEKMKNPF 130
           RRAR K+K++E D+DSL  +++ LK+D DSLL  N +L  E+  L++     S K+K  F
Sbjct: 163 RRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALKKHDRKESAKIKREF 222

[Close]

BLAST of Sed0003821 vs. TAIR 10
Match: AT3G01220.1 (homeobox protein 20 )

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-23
Identity = 54/95 (56.84%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           K+RL L+QV  LEKSF  GNKLE ERK+Q+AK  G++PRQ+A+WFQNRRAR K++++E D
Sbjct: 88  KKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERD 147

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREK 119
           +DSL  ++E LK+D  SLL  N +L  EV  L+ K
Sbjct: 148 YDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNK 182

[Close]

BLAST of Sed0003821 vs. TAIR 10
Match: AT3G01470.1 (homeobox 1 )

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-23
Identity = 70/172 (40.70%), Postives = 102/172 (59.30%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           KRRLT +QV LLEKSF   NKLE ERK Q+AK+ GL+PRQVAVWFQNRRAR K+K++E D
Sbjct: 69  KRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERD 128

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASEKMKN-PFGPV-ELEAMDSLV 143
           +D L + Y++L +++DS++  N +L+ EV  L EK    ++  N P G V E   +D + 
Sbjct: 129 YDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQETANEPPGQVPEPNQLDPVY 188

Query: 144 TELGILKEK------AMSENLYKEDQGSRSSSKSDDFYSESPTRENQSQLDN 188
                +K +      ++   +  +D      S    F S  P ++N +  D+
Sbjct: 189 INAAAIKTEDRLSSGSVGSAVLDDDAPQLLDSCDSYFPSIVPIQDNSNASDH 240

[Close]

BLAST of Sed0003821 vs. TAIR 10
Match: AT4G40060.1 (homeobox protein 16 )

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-22
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           KRRL +DQV  LEK+F   NKLE ERK ++A+E GL+PRQVAVWFQNRRAR K+K++E D
Sbjct: 60  KRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKD 119

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREKWSASEKMKN 128
           +  L  +Y+ L+++FDSL + N  L  E+ +++ K +  E   N
Sbjct: 120 YGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVNGEEDNNN 163

[Close]

BLAST of Sed0003821 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 )

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-22
Identity = 52/95 (54.74%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 24  KRRLTLDQVGLLEKSFNAGNKLEHERKVQIAKETGLRPRQVAVWFQNRRARSKSKKIEYD 83
           KRRL+++QV  LEK+F   NKLE ERKV++A+E GL+PRQVAVWFQNRRAR K+K++E D
Sbjct: 63  KRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKD 122

Query: 84  FDSLNAEYEKLKNDFDSLLKLNHELKVEVDQLREK 119
           +  L  +Y+ L+++FDSL + N  L  E+ +L+ K
Sbjct: 123 YGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTK 157

The following BLAST results are available for this feature:

BLAST of Sed0003821 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892732.1	1.1e-73	64.88	homeobox-leucine zipper protein ATHB-54 [Benincasa hispida]	[more]
XP_008446309.1	2.3e-71	64.88	PREDICTED: homeobox-leucine zipper protein ATHB-16 [Cucumis melo]	[more]
XP_004135200.1	4.4e-70	62.40	homeobox-leucine zipper protein HAT5 [Cucumis sativus] >KGN51881.1 hypothetical ...	[more]
XP_023537958.1	4.1e-68	60.66	homeobox-leucine zipper protein HOX20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022956848.1	5.9e-67	59.84	homeobox-leucine zipper protein ATHB-16-like [Cucurbita moschata]	[more]

BLAST of Sed0003821 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00466	5.4e-23	50.00	Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana OX=3702 GN=HAT7 PE=...	[more]
A2X980	9.3e-23	57.00	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q6YWR4	9.3e-23	57.00	Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q8LAT0	2.1e-22	56.84	Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
Q02283	3.5e-22	40.70	Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana OX=3702 GN=HAT5 PE=...	[more]

BLAST of Sed0003821 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BER7	1.1e-71	64.88	homeobox-leucine zipper protein ATHB-16 OS=Cucumis melo OX=3656 GN=LOC103489083 ...	[more]
A0A0A0KVU6	2.1e-70	62.40	Homeobox protein OS=Cucumis sativus OX=3659 GN=Csa_5G604260 PE=4 SV=1	[more]
A0A6J1GYD2	2.9e-67	59.84	homeobox-leucine zipper protein ATHB-16-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1DBJ2	1.9e-66	60.25	homeobox-leucine zipper protein ATHB-16 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KEP6	3.5e-65	59.43	homeobox-leucine zipper protein ATHB-7-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Sed0003821 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15150.1	3.9e-24	50.00	homeobox 3	[more]
AT3G01220.1	1.5e-23	56.84	homeobox protein 20	[more]
AT3G01470.1	2.5e-23	40.70	homeobox 1	[more]
AT4G40060.1	1.6e-22	50.96	homeobox protein 16	[more]
AT2G22430.1	2.1e-22	54.74	homeobox protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..118
None	No IPR available	GENE3D	1.10.10.60		coord: 15..82 e-value: 1.3E-17 score: 65.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..185
None	No IPR available	PANTHER	PTHR24326	HOMEOBOX-LEUCINE ZIPPER PROTEIN	coord: 17..185
None	No IPR available	PANTHER	PTHR24326:SF575	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5-LIKE	coord: 17..185
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 49..58 score: 32.62 coord: 58..74 score: 58.88
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 20..82 e-value: 3.7E-16 score: 69.7
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 24..76 e-value: 2.7E-15 score: 56.0
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 18..78 score: 15.936599
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 24..79 e-value: 4.69443E-14 score: 62.646
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 78..118 e-value: 3.0E-9 score: 36.9
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 53..76
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003821.1	Sed0003821.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding