Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAATCCGGCATAGTCGTCGCAGAAGGCTGCATTCGGGTCAAGAATGAAATCCGCAATGAGGACGAAACGGTGCTCGTGGTTGCCCTACATGGTGAAGTTAAGGACATATCTGTTTTGACCGAGTTTAAGAACAACAACAACAACAACAACCAAATTCAGGTCTCCAATTTCAAGAACCCATTCTTTTACTACTACAATCTTTCTAAGGTAGCTATTCTTTTCTTGCTAATTCTGTTGAATTCATCTTTATTAACCTTCAAACTTTGTTGTGATGCCTTTGAAACTGTTGCCCTACGATTACTTAGTCAGGGATTCGCTTCCCGGTGAGAGCTCGGGAGTAATGCCCCCAAAATCTAGTCGAAATATATAATCGAGTTTGTATTTTCGTATTGGATTTTTAGGTGTTTAGGCCAAAATCAAAATCTTCATTGATTTGGTGCTTCATTTGTTGCAGAGGTATATTAAGCAGTAACGAAGTTGAGCTCTCTGCCTTGGGAATGGGTATTATGAGTTCTTGAATCCATTTGGTTTTCATATCTTGTAAACAGTTAGATTTAAATACTTCCATTGATTTCTGTAATACAGCTATACCTTCTATTGACATGTGAATCTTTTTTAGAATTGGGCACTCTCTAAACACTTGTTTGAAAAAAAATCTGCAGACTTGATTTTATCTTCTGTCAGTTTCAAGAATGGTGAAAATGATAGGCTGATTTTGAAACCAAAGGTTAGTGCTTAGCCAGATTAAGAGTGTTTATGATTCATTTGTTGGATTAAGATTGAGATAGCACTGGCGAATGGGCGAGTGAATTGCAGGTTCTTTGTAATTGAACTGCCAACTTCAAATTACATACATAATTGGATAAACAGACTGATGAAAATGAAAATCTGGAACTTTGCTATTTGCTAG
mRNA sequence
ATGGCAAAATCCGGCATAGTCGTCGCAGAAGGCTGCATTCGGGTCAAGAATGAAATCCGCAATGAGGACGAAACGGTGCTCGTGGTTGCCCTACATGGTGAAGTTAAGGACATATCTGTTTTGACCGAGTTTAAGAACAACAACAACAACAACAACCAAATTCAGGTCTCCAATTTCAAGAACCCATTCTTTTACTACTACAATCTTTCTAAGGTGTTTAGGCCAAAATCAAAATCTTCATTGATTTGGTGCTTCATTTGTTGCAGAGGTATATTAAGCAGTAACGAAGTTGAGCTCTCTGCCTTGGGAATGGACTTGATTTTATCTTCTGTCAGTTTCAAGAATGGTGAAAATGATAGGCTGATTTTGAAACCAAAGATTGAGATAGCACTGGCGAATGGGCGAGTGAATTGCAGGTTCTTTGTAATTGAACTGCCAACTTCAAATTACATACATAATTGGATAAACAGACTGATGAAAATGAAAATCTGGAACTTTGCTATTTGCTAG
Coding sequence (CDS)
ATGGCAAAATCCGGCATAGTCGTCGCAGAAGGCTGCATTCGGGTCAAGAATGAAATCCGCAATGAGGACGAAACGGTGCTCGTGGTTGCCCTACATGGTGAAGTTAAGGACATATCTGTTTTGACCGAGTTTAAGAACAACAACAACAACAACAACCAAATTCAGGTCTCCAATTTCAAGAACCCATTCTTTTACTACTACAATCTTTCTAAGGTGTTTAGGCCAAAATCAAAATCTTCATTGATTTGGTGCTTCATTTGTTGCAGAGGTATATTAAGCAGTAACGAAGTTGAGCTCTCTGCCTTGGGAATGGACTTGATTTTATCTTCTGTCAGTTTCAAGAATGGTGAAAATGATAGGCTGATTTTGAAACCAAAGATTGAGATAGCACTGGCGAATGGGCGAGTGAATTGCAGGTTCTTTGTAATTGAACTGCCAACTTCAAATTACATACATAATTGGATAAACAGACTGATGAAAATGAAAATCTGGAACTTTGCTATTTGCTAG
Protein sequence
MAKSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMDLILSSVSFKNGENDRLILKPKIEIALANGRVNCRFFVIELPTSNYIHNWINRLMKMKIWNFAIC
Homology
BLAST of Sed0003756 vs. NCBI nr
Match:
XP_038877187.1 (uncharacterized protein At2g34160-like [Benincasa hispida])
HSP 1 Score: 122.1 bits (305), Expect = 4.6e-24
Identity = 79/152 (51.97%), Postives = 91/152 (59.87%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+EG VKNEIR+E+E +LVVA GEVK+I+VLTEFK NQIQVSN K P
Sbjct: 2 ESGMVVSEGTPEVKNEIRSEEEKLLVVANDGEVKEIAVLTEFK---KKRNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM------------------ 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RHIKQYNEVELSALGMAIPTVVTIAEILKRNGLA 121
Query: 123 ---DLILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS K GEND+L++KPKIEIAL N
Sbjct: 122 FQKTLTISSVSLKKGENDKLVMKPKIEIALVN 133
BLAST of Sed0003756 vs. NCBI nr
Match:
KAG6582358.1 (hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 122.1 bits (305), Expect = 4.6e-24
Identity = 80/152 (52.63%), Postives = 90/152 (59.21%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+E VKNEIRNE+E +LVVA GEVK+I+VLTE K NQIQVSN K P
Sbjct: 2 ESGMVVSEAISEVKNEIRNEEEKLLVVAPDGEVKEIAVLTEIK---KKRNQIQVSNVKRP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMD----------------- 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA 121
Query: 123 ----LILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 FQKYLTISSVSLKNGENDRLVMKPKIEIALIN 133
BLAST of Sed0003756 vs. NCBI nr
Match:
KAG7018769.1 (hypothetical protein SDJN02_20642 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 121.7 bits (304), Expect = 6.0e-24
Identity = 80/154 (51.95%), Postives = 90/154 (58.44%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+E VKNEIRNE+E +LVVA GEVK+I+VLTE K NQIQVSN K P
Sbjct: 2 ESGMVVSEAISEVKNEIRNEEEKLLVVAPDGEVKEIAVLTEIK---KKRNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMD----------------- 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMGTTIPTVVTIAEILKKNG 121
Query: 123 ------LILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 LAFQKYLTISSVSLKNGENDRLVMKPKIEIALIN 135
BLAST of Sed0003756 vs. NCBI nr
Match:
XP_022924600.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023528324.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 120.9 bits (302), Expect = 1.0e-23
Identity = 79/152 (51.97%), Postives = 90/152 (59.21%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+E +KNEIRNE+E +LVVA GEVK+I+VLTE K NQIQVSN K P
Sbjct: 2 ESGMVVSEAISELKNEIRNEEEKLLVVAPDGEVKEIAVLTEIK---KKRNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMD----------------- 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA 121
Query: 123 ----LILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 FQKYLTISSVSLKNGENDRLVMKPKIEIALIN 133
BLAST of Sed0003756 vs. NCBI nr
Match:
XP_022980835.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])
HSP 1 Score: 118.6 bits (296), Expect = 5.1e-23
Identity = 79/152 (51.97%), Postives = 89/152 (58.55%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+E VKNEIRNE+E +LVVA EVK+I+VLTE K NQIQVSN K P
Sbjct: 2 ESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIK---KKRNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMD----------------- 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA 121
Query: 123 ----LILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 FQKYLTISSVSLKNGENDRLVMKPKIEIALIN 133
BLAST of Sed0003756 vs. ExPASy TrEMBL
Match:
A0A6J1EFH1 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111432040 PE=4 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 5.0e-24
Identity = 79/152 (51.97%), Postives = 90/152 (59.21%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+E +KNEIRNE+E +LVVA GEVK+I+VLTE K NQIQVSN K P
Sbjct: 2 ESGMVVSEAISELKNEIRNEEEKLLVVAPDGEVKEIAVLTEIK---KKRNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMD----------------- 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA 121
Query: 123 ----LILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 FQKYLTISSVSLKNGENDRLVMKPKIEIALIN 133
BLAST of Sed0003756 vs. ExPASy TrEMBL
Match:
A0A6J1IXN8 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111480105 PE=4 SV=1)
HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 79/152 (51.97%), Postives = 89/152 (58.55%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+SG+VV+E VKNEIRNE+E +LVVA EVK+I+VLTE K NQIQVSN K P
Sbjct: 2 ESGMVVSEATSEVKNEIRNEEEKLLVVAPDVEVKEIAVLTEIK---KKRNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGMD----------------- 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA 121
Query: 123 ----LILSSVSFKNGENDRLILKPKIEIALAN 134
L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 FQKYLTISSVSLKNGENDRLVMKPKIEIALIN 133
BLAST of Sed0003756 vs. ExPASy TrEMBL
Match:
A0A0A0L8F8 (Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G142990 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 3.2e-23
Identity = 77/151 (50.99%), Postives = 88/151 (58.28%), Query Frame = 0
Query: 4 SGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPF 63
SG+VV+E VKNEIRNE+E +LV A EVK+I+VLTEFK NQIQVSN K PF
Sbjct: 3 SGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFK---KKRNQIQVSNVKKPF 62
Query: 64 FYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM------------------- 123
FYYYNLSK R I NEVELSALGM
Sbjct: 63 FYYYNLSK-----------------RHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAF 122
Query: 124 --DLILSSVSFKNGENDRLILKPKIEIALAN 134
L++SSVS KNGEN +L++KPKIEIAL N
Sbjct: 123 QKKLMISSVSLKNGENGKLVMKPKIEIALVN 133
BLAST of Sed0003756 vs. ExPASy TrEMBL
Match:
A0A6J1D0Y9 (uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC111016353 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 9.4e-23
Identity = 79/152 (51.97%), Postives = 91/152 (59.87%), Query Frame = 0
Query: 3 KSGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNP 62
+S IVV+E VK+EIRNE+E +LVVA G+VK+I+VLTEFK NQIQVSN K P
Sbjct: 2 ESAIVVSE-ATEVKSEIRNENEKLLVVAPDGKVKEIAVLTEFK---KKKNQIQVSNVKKP 61
Query: 63 FFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM------------------ 122
FFYYYNLSK R I NEVELSALGM
Sbjct: 62 FFYYYNLSK-----------------RYIKQYNEVELSALGMAIPTVVTIAEILKKNGLA 121
Query: 123 ---DLILSSVSFKNGENDRLILKPKIEIALAN 134
+L +SSVS KNGENDRL++KPKIEIAL N
Sbjct: 122 SEKNLTISSVSLKNGENDRLVMKPKIEIALVN 132
BLAST of Sed0003756 vs. ExPASy TrEMBL
Match:
A0A5D3CZ81 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001140 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 76/151 (50.33%), Postives = 87/151 (57.62%), Query Frame = 0
Query: 4 SGIVVAEGCIRVKNEIRNEDETVLVVALHGEVKDISVLTEFKNNNNNNNQIQVSNFKNPF 63
SG VV+E VKNEI+NE+E +LV A EVK+I+VLTEFK NQIQVSN K PF
Sbjct: 3 SGTVVSEATPEVKNEIQNEEEKLLVTAPDSEVKEIAVLTEFK---KKRNQIQVSNVKKPF 62
Query: 64 FYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM------------------- 123
FYYYNLSK R I NEVELSALGM
Sbjct: 63 FYYYNLSK-----------------RHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAF 122
Query: 124 --DLILSSVSFKNGENDRLILKPKIEIALAN 134
+L +SSVS KNGEN +L++KPKIEIAL N
Sbjct: 123 QKNLTISSVSLKNGENGKLVMKPKIEIALVN 133
BLAST of Sed0003756 vs. TAIR 10
Match:
AT3G04620.1 (Alba DNA/RNA-binding protein )
HSP 1 Score: 42.0 bits (97), Expect = 5.7e-04
Identity = 34/104 (32.69%), Postives = 45/104 (43.27%), Query Frame = 0
Query: 49 NNNNQIQVSNFKNPFFYYYNLSKVFRPKSKSSLIWCFICCRGILSSNEVELSALGM---- 108
+ N+IQVSN K P F+Y NL+K R I NEVELSALGM
Sbjct: 35 HKKNRIQVSNTKKPLFFYVNLAK-----------------RYIQQHNEVELSALGMAITT 94
Query: 109 -----------------DLILSSVSFKNGENDRLILKPKIEIAL 132
++ S+V K+ +++ K KIEI L
Sbjct: 95 VVTISEILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVL 121
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038877187.1 | 4.6e-24 | 51.97 | uncharacterized protein At2g34160-like [Benincasa hispida] | [more] |
| KAG6582358.1 | 4.6e-24 | 52.63 | hypothetical protein SDJN03_22360, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7018769.1 | 6.0e-24 | 51.95 | hypothetical protein SDJN02_20642 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| XP_022924600.1 | 1.0e-23 | 51.97 | uncharacterized protein At2g34160-like [Cucurbita moschata] >XP_023528324.1 unch... | [more] |
| XP_022980835.1 | 5.1e-23 | 51.97 | uncharacterized protein At2g34160-like [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1EFH1 | 5.0e-24 | 51.97 | uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11143... | [more] |
| A0A6J1IXN8 | 2.5e-23 | 51.97 | uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114801... | [more] |
| A0A0A0L8F8 | 3.2e-23 | 50.99 | Alba domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G142990 PE=4 S... | [more] |
| A0A6J1D0Y9 | 9.4e-23 | 51.97 | uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC1110... | [more] |
| A0A5D3CZ81 | 2.1e-22 | 50.33 | Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G04620.1 | 5.7e-04 | 32.69 | Alba DNA/RNA-binding protein | [more] |
