Sed0003747 (gene) Chayote v1

Overview
NameSed0003747
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG12: 3671854 .. 3673749 (-)
RNA-Seq ExpressionSed0003747
SyntenySed0003747
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAAACTGATGGAGGAGAAACAGAACAACGACGGCGCCGACGACGATCTGCAACTCCTTTCCCGATAGCTCTCTCAGGGGGTGTTTGTTTGACGTTTTTAGCTAGGAGTTAGAATTGGGGTTTATTAACTCCTTGAAAACTTACATCCAACCGAGTTTTTACCAACTCTTTCTTAATTTTACTTTTGAAAATAACTCTCATTTCTAACCATTCATTTGTAATCATTCATTTATAACTACTCAATCATTTTTAACCACTCATTTTTAATCATTTCTTTTTTAACTACTAAAAATAACTACTCATTTTTAAATCAACATCCAAACAAGATTTTGACTATAATTCATCTACACAAAAACTACATCCAAACGAGTTTTTTGCACAATTCTCAATTTTTAACTTCTCAATATAACTCTTTAACGTAAAAACTACCTAAATATGTCAAACAAACACCCCCTCGGGTTACAATCCCTACATCCCCATCAATTCAACTCTCTTGTTTCTATGATATAATGTTCGTGGAATGGAAACGGATTAACACCAAATCAGATAACTAATCAACTCATTCGGTATTAATATCTTAGTGCATGAGTTTTTCTTACAACTGAATATAGGAAAGGTTAGTTGTCCAGTTATTATAAAAAAGAGTAATACTTCGTTACTTACAAGTATCTAGTACAAACTTACCACTTATTCATGAAGATTAAACTTTATTACGTTTTTAAATATCATTTGTTTCTCATTAGTCAAATCATTCTTTTTTATATATATTCTTTAATGCATTTTTTATACCTCACAAATAGAAGTAAGTTCTTACTAAGTATCTAAGCACTTCTCTTATTAAAAAAAAGAATCATAAGATTAGTTGTCCCGTAAGAACAATAAGCATAAACTGACCTAGATATGGATATCAATAAAAAAAAAAAAATAATAATAAAAAAAAAAAACAAACAAACAAAAACAAAATTTATTTTATTTTTAAGTTAATGTATTTCCGAACTCTCAACACGATCCAATGGCATGGATCAAGTTTTTTCCTCGCTGTTTTACCTATTTCTAATTTAGCAACACAAAGGAATGGTAATCATGTGGTCAAAATCCTTTATTTCATTTTCTAATTGGGGATCAAGTTTTACTATTAAAAAGAAGACTCGTAATGGTTGTTAAAGTTATAACATACATCCAAGTAACATGCAACTTTTATTTTTTATATAGGTTACTGTTCAGGTCAACTTGCACGAACCTCGACTAATGTCACGAGACATATCACCTGATCCTACAACTTATTTTATGTTCAGAAAATAACTAGGAAATTAGTTCTTAGGTAGGTGGCCACCATAGATAGAAGCTGTCACCTGTTAGCTCTCCAAGACCTTCTTGACCACGAGACCACTCTATGATGGTTCCGAGTAACCGCAACTAATAGCCCTTCACTGCCACTAACAGGTGGAATCAACAAGAGAAAAACAGAGACTCGAGCACTCCCAACTTTCAGCTCAACAAGATGATGAAAAAATAATTGAAACAGACTTAGAGACTCAAAATGAAAATGTGGGAAGTAGTGGAAGCAAAATGAAAGTAGAAGAGATGGTAAAGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTAATAACTCACTGCCTTGGATTATCCTCACTGTTGCTTGGCAAGTTTGTGAGGTGTCTCTCATTTTGAAACTCAAAGATGGACTGAGCAACCCTTTCAAATCCCTGGGTAGAATTGTAAAAAGAAAGACAACTTCAGCAATTCAACAACAGATTGAAGCTAATGAATTGCAAAATCTTAATATGCCTGCCCTACACCTACCAGATTTTGACTTGGATGAGAAATAG

mRNA sequence

ATGCCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAAACTGATGGAGGAGAAACAGAACAACGACGGCGTGGAATCAACAAGAGAAAAACAGAGACTCGAGCACTCCCAACTTTCAGCTCAACAAGATGATGAAAAAATAATTGAAACAGACTTAGAGACTCAAAATGAAAATGTGGGAAGTAGTGGAAGCAAAATGAAAGTAGAAGAGATGGTAAAGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTAATAACTCACTGCCTTGGATTATCCTCACTGTTGCTTGATGGACTGAGCAACCCTTTCAAATCCCTGGGTAGAATTGTAAAAAGAAAGACAACTTCAGCAATTCAACAACAGATTGAAGCTAATGAATTGCAAAATCTTAATATGCCTGCCCTACACCTACCAGATTTTGACTTGGATGAGAAATAG

Coding sequence (CDS)

ATGCCGGAGGCGGCGGAGGAGATGGAGCTCATCAGCCTTGCGATTCGAAAACTGATGGAGGAGAAACAGAACAACGACGGCGTGGAATCAACAAGAGAAAAACAGAGACTCGAGCACTCCCAACTTTCAGCTCAACAAGATGATGAAAAAATAATTGAAACAGACTTAGAGACTCAAAATGAAAATGTGGGAAGTAGTGGAAGCAAAATGAAAGTAGAAGAGATGGTAAAGAAAGAGCTAAAAGAAGTGAAGAGGCAGAATTTAATAACTCACTGCCTTGGATTATCCTCACTGTTGCTTGATGGACTGAGCAACCCTTTCAAATCCCTGGGTAGAATTGTAAAAAGAAAGACAACTTCAGCAATTCAACAACAGATTGAAGCTAATGAATTGCAAAATCTTAATATGCCTGCCCTACACCTACCAGATTTTGACTTGGATGAGAAATAG

Protein sequence

MPEAAEEMELISLAIRKLMEEKQNNDGVESTREKQRLEHSQLSAQQDDEKIIETDLETQNENVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLLLDGLSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPALHLPDFDLDEK
Homology
BLAST of Sed0003747 vs. NCBI nr
Match: XP_038895500.1 (uncharacterized protein LOC120083719 [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 5.5e-37
Identity = 106/188 (56.38%), Postives = 126/188 (67.02%), Query Frame = 0

Query: 1   MPEAAEEMELISLAIRKLMEEKQNNDG---------------------VESTREKQRLEH 60
           M EA EEMELISLAIR+LMEE  N                        VESTRE+QRL H
Sbjct: 1   MAEATEEMELISLAIRRLMEEDDNRTASHRSSGADAHDLQLLSRLLSQVESTREEQRLNH 60

Query: 61  SQLSAQQDDEKIIETDLETQNENVGSSG-SKMKVEEMVKKELKEVKRQNLITHCLGLSSL 120
           SQ+SAQQ DEKIIET+LE Q+ENV  SG +++K+E+++ KELKEVKRQN ITHCL  + +
Sbjct: 61  SQISAQQKDEKIIETELEPQSENVERSGRNRVKIEKVIVKELKEVKRQNFITHCLVSAMI 120

Query: 121 LL----------------DGLSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL--- 148
           +L                +GLSNPFKSLG I+KRKTTSAIQ QIEA EL +LNMPAL   
Sbjct: 121 ILTVAWQVSEVSFILKLRNGLSNPFKSLGTILKRKTTSAIQHQIEATELPHLNMPALPHV 180

BLAST of Sed0003747 vs. NCBI nr
Match: XP_008454012.1 (PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-25
Identity = 95/188 (50.53%), Postives = 114/188 (60.64%), Query Frame = 0

Query: 4   AAEEMELISLAIRKLMEEKQNN-----------------------DGVESTREKQRLEHS 63
           A EEMELISLAIR+LMEE +N                          VESTRE+QRL H 
Sbjct: 5   AEEEMELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH- 64

Query: 64  QLSAQQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLL 123
              ++Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN +THCL  + ++
Sbjct: 65  --YSKQEDGEIIETNLEAEGENNVERSEIKVKTEEIV-KELKEVKKQNFVTHCLVSAMII 124

Query: 124 L----------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL--- 148
           L                DG LSNPFKSLG I+KRKTTSAIQ QIEA EL  LN+PA+   
Sbjct: 125 LTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHV 184

BLAST of Sed0003747 vs. NCBI nr
Match: KAA0044571.1 (uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-24
Identity = 92/184 (50.00%), Postives = 111/184 (60.33%), Query Frame = 0

Query: 8   MELISLAIRKLMEEKQNN-----------------------DGVESTREKQRLEHSQLSA 67
           MELISLAIR+LMEE +N                          VESTRE+QRL H    +
Sbjct: 1   MELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YS 60

Query: 68  QQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLLL--- 127
           +Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN +THCL  + ++L   
Sbjct: 61  KQEDGEIIETNLEAEGENNVERSEIKVKTEEIV-KELKEVKKQNFVTHCLVSAMIILTVA 120

Query: 128 -------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL---HLPD 148
                        DG LSNPFKSLG I+KRKTTSAIQ QIEA EL  LN+PA+    LPD
Sbjct: 121 WQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPD 180

BLAST of Sed0003747 vs. NCBI nr
Match: XP_004152113.1 (uncharacterized protein LOC101214522 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.3e-24
Identity = 94/188 (50.00%), Postives = 112/188 (59.57%), Query Frame = 0

Query: 4   AAEEMELISLAIRKLMEEKQNNDG-------------------------VESTREKQRLE 63
           AA EMELISLAIR+LMEE ++                            VESTR +QRL 
Sbjct: 5   AAVEMELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGEQRLN 64

Query: 64  HSQLSAQQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSS 123
           HS    +Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN ITHCL  + 
Sbjct: 65  HS----KQEDGEIIETNLEAERENNVERSEMKLKTEEIV-KELKEVKKQNFITHCLVSAM 124

Query: 124 LLL----------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL- 146
           ++L                DG LSNPFKSL  I+KRKTTSAIQ QIEA EL +LN+PAL 
Sbjct: 125 IILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNIPALP 184

BLAST of Sed0003747 vs. NCBI nr
Match: KAE8649098.1 (hypothetical protein Csa_015237 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 7.7e-23
Identity = 91/184 (49.46%), Postives = 109/184 (59.24%), Query Frame = 0

Query: 8   MELISLAIRKLMEEKQNNDG-------------------------VESTREKQRLEHSQL 67
           MELISLAIR+LMEE ++                            VESTR +QRL HS  
Sbjct: 1   MELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGEQRLNHS-- 60

Query: 68  SAQQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLLL- 127
             +Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN ITHCL  + ++L 
Sbjct: 61  --KQEDGEIIETNLEAERENNVERSEMKLKTEEIV-KELKEVKKQNFITHCLVSAMIILT 120

Query: 128 ---------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL---HL 146
                          DG LSNPFKSL  I+KRKTTSAIQ QIEA EL +LN+PAL    L
Sbjct: 121 VAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNIPALPHVTL 179

BLAST of Sed0003747 vs. ExPASy TrEMBL
Match: A0A1S3BXR6 (uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.1e-26
Identity = 95/188 (50.53%), Postives = 114/188 (60.64%), Query Frame = 0

Query: 4   AAEEMELISLAIRKLMEEKQNN-----------------------DGVESTREKQRLEHS 63
           A EEMELISLAIR+LMEE +N                          VESTRE+QRL H 
Sbjct: 5   AEEEMELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH- 64

Query: 64  QLSAQQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLL 123
              ++Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN +THCL  + ++
Sbjct: 65  --YSKQEDGEIIETNLEAEGENNVERSEIKVKTEEIV-KELKEVKKQNFVTHCLVSAMII 124

Query: 124 L----------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL--- 148
           L                DG LSNPFKSLG I+KRKTTSAIQ QIEA EL  LN+PA+   
Sbjct: 125 LTVAWQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHV 184

BLAST of Sed0003747 vs. ExPASy TrEMBL
Match: A0A5A7TSP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003210 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 92/184 (50.00%), Postives = 111/184 (60.33%), Query Frame = 0

Query: 8   MELISLAIRKLMEEKQNN-----------------------DGVESTREKQRLEHSQLSA 67
           MELISLAIR+LMEE +N                          VESTRE+QRL H    +
Sbjct: 1   MELISLAIRRLMEENRNRTTSHRSSDTDTDADDMQLLSQLLSEVESTREEQRLNH---YS 60

Query: 68  QQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLLL--- 127
           +Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN +THCL  + ++L   
Sbjct: 61  KQEDGEIIETNLEAEGENNVERSEIKVKTEEIV-KELKEVKKQNFVTHCLVSAMIILTVA 120

Query: 128 -------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL---HLPD 148
                        DG LSNPFKSLG I+KRKTTSAIQ QIEA EL  LN+PA+    LPD
Sbjct: 121 WQISEVSFILKLRDGLLSNPFKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPD 180

BLAST of Sed0003747 vs. ExPASy TrEMBL
Match: A0A0A0KTW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 94/188 (50.00%), Postives = 112/188 (59.57%), Query Frame = 0

Query: 4   AAEEMELISLAIRKLMEEKQNNDG-------------------------VESTREKQRLE 63
           AA EMELISLAIR+LMEE ++                            VESTR +QRL 
Sbjct: 5   AAVEMELISLAIRRLMEENRHRTNSHRSSDADADADADDMQLLSRLLSEVESTRGEQRLN 64

Query: 64  HSQLSAQQDDEKIIETDLETQNE-NVGSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSS 123
           HS    +Q+D +IIET+LE + E NV  S  K+K EE+V KELKEVK+QN ITHCL  + 
Sbjct: 65  HS----KQEDGEIIETNLEAERENNVERSEMKLKTEEIV-KELKEVKKQNFITHCLVSAM 124

Query: 124 LLL----------------DG-LSNPFKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL- 146
           ++L                DG LSNPFKSL  I+KRKTTSAIQ QIEA EL +LN+PAL 
Sbjct: 125 IILTVAWQISEVSFILKLRDGLLSNPFKSLATILKRKTTSAIQHQIEATELPHLNIPALP 184

BLAST of Sed0003747 vs. ExPASy TrEMBL
Match: A0A5D3CZN3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001570 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 84/164 (51.22%), Postives = 107/164 (65.24%), Query Frame = 0

Query: 5   AEEMELISLAIRKLMEEKQNNDGVESTREKQRLEHSQLSAQQDDEKIIETDLETQNE-NV 64
           A++M+L+S    +L+ E      VESTRE+QRL H    ++Q+D +IIET+LE + E NV
Sbjct: 20  ADDMQLLS----QLLSE------VESTREEQRLNH---YSKQEDGEIIETNLEAEGENNV 79

Query: 65  GSSGSKMKVEEMVKKELKEVKRQNLITHCLGLSSLLL----------------DG-LSNP 124
             S  K+K EE+V KELKEVK+QN +THCL  + ++L                DG LSNP
Sbjct: 80  ERSEIKVKTEEIV-KELKEVKKQNFVTHCLVSAMIILTVAWQISEVSFILKLRDGLLSNP 139

Query: 125 FKSLGRIVKRKTTSAIQQQIEANELQNLNMPAL---HLPDFDLD 148
           FKSLG I+KRKTTSAIQ QIEA EL  LN+PA+    LPDFD D
Sbjct: 140 FKSLGTILKRKTTSAIQHQIEATELPQLNIPAIPHVSLPDFDDD 169

BLAST of Sed0003747 vs. ExPASy TrEMBL
Match: A0A6J1CVQ0 (uncharacterized protein LOC111014725 OS=Momordica charantia OX=3673 GN=LOC111014725 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 74/139 (53.24%), Postives = 88/139 (63.31%), Query Frame = 0

Query: 28  VESTREKQRLEHSQLSAQQDDEKIIETDLETQNENVGSSGSKMKVEEMVKKELKEVKRQN 87
           VESTRE+QR +HSQLSAQQ+D +  ET +E +             EE V KEL+EVKRQN
Sbjct: 32  VESTREEQRRKHSQLSAQQEDVERSETKVERE-------------EEAVVKELEEVKRQN 91

Query: 88  LITHCLGLSSLLL----------------DGLSNPFKSLGRIVKRKTTSAIQQQIEANEL 147
            ITHCL  + ++L                 GLSNPFKSL +I+K+KTTSAI  QIEA EL
Sbjct: 92  FITHCLVSAMIILTVAWQVSEVSFILKLRGGLSNPFKSLAKILKKKTTSAIHNQIEATEL 151

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038895500.15.5e-3756.38uncharacterized protein LOC120083719 [Benincasa hispida][more]
XP_008454012.11.3e-2550.53PREDICTED: uncharacterized protein LOC103494562 [Cucumis melo][more]
KAA0044571.13.1e-2450.00uncharacterized protein E6C27_scaffold46G003210 [Cucumis melo var. makuwa][more]
XP_004152113.15.3e-2450.00uncharacterized protein LOC101214522 [Cucumis sativus][more]
KAE8649098.17.7e-2349.46hypothetical protein Csa_015237 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BXR66.1e-2650.53uncharacterized protein LOC103494562 OS=Cucumis melo OX=3656 GN=LOC103494562 PE=... [more]
A0A5A7TSP61.5e-2450.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KTW62.6e-2450.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G012410 PE=4 SV=1[more]
A0A5D3CZN31.6e-2151.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1CVQ01.6e-2153.24uncharacterized protein LOC111014725 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003747.1Sed0003747.1mRNA