Sed0003745 (gene) Chayote v1

Overview
NameSed0003745
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG06: 9760365 .. 9761408 (-)
RNA-Seq ExpressionSed0003745
SyntenySed0003745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGCTGTGATACATAAGTGGTACACTCACTTTCATCCAGCTGTCGGCAAATGAAAACAGAAAGCGGGCAATTATTTTGAGAGTGAAAGGCACTTCAATATCACAATAATTTCAATTATTATGATCAATTCTTATCCCATTTGAATATCACTAAACTTATATCCACATGTTCTTCATCCTCTCATTCCTTTCATTATTTCTTCCCTTCTTTCTTTCTCCCTCTTCCCCTTCCGATCAAAATTAATCCATGAGACATTCAACCAACACAGCTGTCGCAACCGCAGCGATCGCTGTCATGATTTCGATGCTTTGTGCAAGCAACTGCAAGGCTGCTTCTCCCCTTCCTCCCATTTTCGACAACGAGACCGTCGCTGCTGCAGCGTCGAAGTGGTGCGACGGCCTCCCCGAAGAATGCTTGGCCGTTGAAGAAATGTCCATTGATTTTTACAATGTTCGAAGGACAGGACAGCGAGACAGTTCTATATGTGGTCGGGACTATATGGGTAGATATGTTGGCTGCTTTATGTATAAAGGATCCGACAACCCAAAAATTTGTCGTGACAACTATGATCGAAGCTGCAAATTATAAGAATTTAAGGAGAAGTCGACATGTCGTCCGCCAATTTCTCCGTTGACCTATCAGCTCACTAGGGTGAGTCTTTGAAAGCTTATTTCCTTTGAAGTTAATAATTTGATGAACTTTTTGGTTAAGGCTTCTTCTTAAGCAATTTCCAATTTATTTTTATTTTTATTTTAGTTCATTTCGGCCTCAATTATTGTTTAGGGTAACTGGTTCGGATATATGTAAGAAAGTGGGTTAAAGTGTAATAAATAAGTTTACCTTAAGGTGCGTTTTTAGACGTTTCGACTGGTTTTTTCTTTAACATCATTTAATATGAGACCATAGCATGGAAGTCATTATAGCTAAATTCTTATCATGTTTTTTCCAGTATAATTAACATTATATTGAGAATCTATAAAGTTCAAAAAGTATTTGGTCAAATAATTACTGACCAGAGCAATAATTGAATAACATCTTGATGT

mRNA sequence

ATCGCTGTGATACATAAGTGGTACACTCACTTTCATCCAGCTGTCGGCAAATGAAAACAGAAAGCGGGCAATTATTTTGAGAGTGAAAGGCACTTCAATATCACAATAATTTCAATTATTATGATCAATTCTTATCCCATTTGAATATCACTAAACTTATATCCACATGTTCTTCATCCTCTCATTCCTTTCATTATTTCTTCCCTTCTTTCTTTCTCCCTCTTCCCCTTCCGATCAAAATTAATCCATGAGACATTCAACCAACACAGCTGTCGCAACCGCAGCGATCGCTGTCATGATTTCGATGCTTTGTGCAAGCAACTGCAAGGCTGCTTCTCCCCTTCCTCCCATTTTCGACAACGAGACCGTCGCTGCTGCAGCGTCGAAGTGGTGCGACGGCCTCCCCGAAGAATGCTTGGCCGTTGAAGAAATGTCCATTGATTTTTACAATGTTCGAAGGACAGGACAGCGAGACAGTTCTATATGTGGTCGGGACTATATGGGTAGATATGTTGGCTGCTTTATGTATAAAGGATCCGACAACCCAAAAATTTGTCGTGACAACTATGATCGAAGCTGCAAATTATAAGAATTTAAGGAGAAGTCGACATGTCGTCCGCCAATTTCTCCGTTGACCTATCAGCTCACTAGGGTGAGTCTTTGAAAGCTTATTTCCTTTGAAGTTAATAATTTGATGAACTTTTTGGTTAAGGCTTCTTCTTAAGCAATTTCCAATTTATTTTTATTTTTATTTTAGTTCATTTCGGCCTCAATTATTGTTTAGGGTAACTGGTTCGGATATATGTAAGAAAGTGGGTTAAAGTGTAATAAATAAGTTTACCTTAAGGTGCGTTTTTAGACGTTTCGACTGGTTTTTTCTTTAACATCATTTAATATGAGACCATAGCATGGAAGTCATTATAGCTAAATTCTTATCATGTTTTTTCCAGTATAATTAACATTATATTGAGAATCTATAAAGTTCAAAAAGTATTTGGTCAAATAATTACTGACCAGAGCAATAATTGAATAACATCTTGATGT

Coding sequence (CDS)

ATGAGACATTCAACCAACACAGCTGTCGCAACCGCAGCGATCGCTGTCATGATTTCGATGCTTTGTGCAAGCAACTGCAAGGCTGCTTCTCCCCTTCCTCCCATTTTCGACAACGAGACCGTCGCTGCTGCAGCGTCGAAGTGGTGCGACGGCCTCCCCGAAGAATGCTTGGCCGTTGAAGAAATGTCCATTGATTTTTACAATGTTCGAAGGACAGGACAGCGAGACAGTTCTATATGTGGTCGGGACTATATGGGTAGATATGTTGGCTGCTTTATGTATAAAGGATCCGACAACCCAAAAATTTGTCGTGACAACTATGATCGAAGCTGCAAATTATAA

Protein sequence

MRHSTNTAVATAAIAVMISMLCASNCKAASPLPPIFDNETVAAAASKWCDGLPEECLAVEEMSIDFYNVRRTGQRDSSICGRDYMGRYVGCFMYKGSDNPKICRDNYDRSCKL
Homology
[Close]
BLAST of Sed0003745 vs. NCBI nr
Match: KGN53789.1 (hypothetical protein Csa_015152 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 0 

Query: 4   STNTAVATAAIAVMI-SMLCASNCKAASPLPPIFDNETVAAAASK-WCDGLPEECLAVEE 63
           +T  A +T A+ ++I ++  +S C AAS LP  F NET+ A  S  +C+GL ++C  VEE
Sbjct: 2   ATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVEE 61

Query: 64  MSIDFYNVRRTGQRDSSICGRDYMGRYVGCFMYKGSDNPKICRDNYDRSC 112
             I +Y+  RTG R SS+CGR Y G Y+ C   +GS  PK CR  YDR+C
Sbjct: 62  NGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

[Close]
BLAST of Sed0003745 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 46/127 (36.22%), Postives = 61/127 (48.03%), Query Frame = 0 

Query: 1   MRHSTNT-----AVATAAIAVMISMLCASNCKAASPLPPIFDNETVAAAASKWCDGLPEE 60
           M HS+N+     A A AA+ V I ML  S+C  ASP P  + N TVAAAAS WCDG  EE
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEE 60

Query: 61  CLAVEE----------MSIDFYNVRRTGQRDSSICGRDYMGRYVGCFMYKGSDNPKICRD 113
           C+  E+           S   +    T  R+  +C R   G Y  CF  + ++       
Sbjct: 61  CVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCERP--GDYKSCFNARRTNTKNDNCG 120

[Close]
BLAST of Sed0003745 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 47/124 (37.90%), Postives = 62/124 (50.00%), Query Frame = 0 

Query: 1   MRHSTNT--AVATAAIAVMISMLCASNCKAASPLPPIFDNETVAAAASKWCDGLPEECLA 60
           M HS+N+   +A AA+ V I +L  S+C  ASP P  + N TVAAAAS WCDG  EEC+ 
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVT 60

Query: 61  VEEMSIDFYNVRRTGQR----------DSSICGRDYMGRYVGCFMYKGSD-NPKICRDNY 112
            E  S   +   +T  R          + ++C R     Y  CF  + S+ NP  C   Y
Sbjct: 61  REGDSASAFPSLQTSTRKYISPSSVNSNKAVCERP--DEYRSCFNPRRSNPNPNNC-GRY 120

[Close]
BLAST of Sed0003745 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 8.5e-06
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 0 

Query: 1   MRHSTNTAVATAAIAVMISMLCASNCKAASPLPPIFDNETVAAAASKWCDGLPEECL-AV 60
           M   T T +   AI V++S + AS+CKAAS    + +  T AA +S WC+ L +ECL  V
Sbjct: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGV 70

Query: 61  EEMSID------FYNVRRTGQRDSSICGRDYMGRYVG--CFMYKGSDNPKICRDNYDRSC 112
           E+ +I+       YN  RT     ++CGR  +GRY    C   K  +  + C   + RSC
Sbjct: 71  EDDNIETSAFPSLYNTVRTANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKC-STFTRSC 127

[Close]
BLAST of Sed0003745 vs. ExPASy TrEMBL
Match: A0A0A0KY59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.8e-17
Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 0 

Query: 4   STNTAVATAAIAVMI-SMLCASNCKAASPLPPIFDNETVAAAASK-WCDGLPEECLAVEE 63
           +T  A +T A+ ++I ++  +S C AAS LP  F NET+ A  S  +C+GL ++C  VEE
Sbjct: 2   ATAAAPSTTAMTILILTLTISSYCNAASVLPSNFANETITAMTSTIFCNGLLQQCFNVEE 61

Query: 64  MSIDFYNVRRTGQRDSSICGRDYMGRYVGCFMYKGSDNPKICRDNYDRSC 112
             I +Y+  RTG R SS+CGR Y G Y+ C   +GS  PK CR  YDR+C
Sbjct: 62  NGIHYYSTPRTGSRASSVCGRFYNGSYIKCITTQGSPKPKDCRSAYDRTC 111

[Close]
BLAST of Sed0003745 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-06
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 0 

Query: 1   MRHSTNTAVATAAIAVMISMLCASNCKAASPLPPIFDNETVAAAASKWCDGLPEECL-AV 60
           M   T T +   AI V++S + AS+CKAAS    + +  T AA +S WC+ L +ECL  V
Sbjct: 11  MATPTTTTMVAVAIIVVVSTIGASHCKAASLNSNLGNETTTAATSSTWCNSLDKECLIGV 70

Query: 61  EEMSID------FYNVRRTGQRDSSICGRDYMGRYVG--CFMYKGSDNPKICRDNYDRSC 112
           E+ +I+       YN  RT     ++CGR  +GRY    C   K  +  + C   + RSC
Sbjct: 71  EDDNIETSAFPSLYNTVRTANGQKAVCGR--VGRYDNQRCLPQKRPNPIQKC-STFTRSC 127

The following BLAST results are available for this feature:
BLAST of Sed0003745 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53789.11.8e-1645.45hypothetical protein Csa_015152 [Cucumis sativus][more]
KAG6607070.11.2e-0736.22hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.11.5e-0737.90hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57814.18.5e-0635.83hypothetical protein Csa_009509 [Cucumis sativus][more]
BLAST of Sed0003745 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0003745 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY598.8e-1745.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G129550 PE=4 SV=1[more]
A0A0A0LA124.1e-0635.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1[more]
BLAST of Sed0003745 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003745.1Sed0003745.1mRNA