Sed0003735 (gene) Chayote v1

Overview


Name	Sed0003735
Type	gene
Organism	Sechium edule (Chayote v1)
Description	E3 ubiquitin-protein ligase SDIR1
Location	LG11: 35743773 .. 35747821 (+)
RNA-Seq Expression	Sed0003735
Synteny	Sed0003735

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACGTCGTTCAACGAATTGAACTCTCCTTTTACCAGAAATCGAACCAAAGGAGGACTGAGCCGCGTCCGAGTCACCTCCTTCACTCGACTCGCTCCTTCCATCTTCTCCGTCGGTTTTCATTTTCCACATAATTTTAAGGCTCGTTGTCGATTTTGGACCATCAAAATCAACCCCATTTACTCGATTCTGTCCTGTAAGTCTCCGATTTCTCTAATCAAGGATCGGTGTTTTCGTATGCCTGCTTTGATTCTGTGTGTGTTTTTATTGTTTGAATTTCACTTGTTTGACTGTCATCGAAGCTTATGGGACTGCATTGCATAATGATTTTGTCTGTCTGATTCTGTTTATCCATTCATGCTACATTTAATTTTATGGGAATTTGCTGGAAATGTGTATGATTCAGAATTTAGCTGAAAAGACTTTTTTTTTTTTAAGAAAATTTTATATTTATGAGCGTATGGAGCGCGACTTCACTATTCTTATGGGACAACTGATTTAGCTATAGGAAATTAATTTATGCGTAGGTGGTCACCATGGATCTAACTCATTCTTTGAATTCAAAATTGGTTCTATGGATGGACTGTTTTGATTTCCAAGTCGAGCATTAGCAATATTGGATGGATGTTTGTATGTATTGGATACTCTGAGGTTTCATCTCAAAAGTAATTGATAATAATCGACCTATTTTATAAAATATAAATGCGAGGAGGTATCTTCATCTTTTTAATTTGTGATTCTCAACCGTACTCACTTGAGATTGAGTGTTGTAATCTTACAGTATTTTGGTGCTGATTGATTAGCCAGGTGAGGGCAAAGCTTGTGTACTTCTGAATGTCTTTTCAGACAATGCAGTATAAGTCACATTTCAGGGTTAATATATTGTCGTGGTGTCTACATTGTCTGGAGGAATCAGTCAATTTTAGTTACTTTATGAAGCGGATGATTGGCTCATGAATGTGGCTTATACGTTGAGTTTGAGATATAAGATAACAGTTAATTGGGATTCATCTGCTCATCTTGTTCTGTTGCACATGTACTGGATGCATTGTTTTTTAGCATGTCGATGCTTAGAAGAGCTTCAAACTCTTCGAAATTTTGTATGATAATATATTTTACTTATGAGTAGTTTGATTGTTTAACCAAGGGCATTAAATCTTTAAATTTATATGGTCTAGGAACGGAGAAGCTTAGCATATTATGAGGCTATGAGCCTTTGATTCTCCAAACTCCACTTCCTATGTTAATTTTCGTTGAGTGATCCATTGATTTCTCGGGGCTGAGAATGATGAATGATGAATTAGTTATAGTAAGGAGGTGAGGGCATCATTTTGTTTTTGTCTATTAATATTAAGATACTGGAGCCTCTTTATTAATGAATTCTGCAGATTATTGCCATAGGCTAATTAGATTTTTCATTTTGTAGATTCACATTTCTCTGACCTCAACCCTAAACTAGCTTTTGCAACTAATTCAGACATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGGTTTCTACCTGAGCGGCGTGCAATGGTATGCTTGGCATTTCACAGACTTTTCTTTTTCGATACAAATGCTCAGAATTTTTTACCTATTGCACTTGTTTGATTTTATTTTAAAACATTTTTTCTGCTTTCAATCAGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGCATTTCTTGTCACAGGTACCACTTCACCTATGTATGTAACTGATTTTTGTTTCTTGTGATAATTTTGGTAACTGTTTTAACTCCTTCACTTTGTTCCAGTCCTTTTGTTATTCATGATATTAAACTCTCACCAGATGCCACCTAACTTTCTGGTAAGTTTCATATTCCACAATGTGCATGTTTAGTAGACTGCCTTACTTTCTCACCCTTAATACAAATCTTTGCATTTTTTTCTTCTTATGAACATGCATATTTAGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAAGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGCCTTCTTGGTCACACTGAATTGAGGGTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTTTGCTTGATAGGGAATTCGATGATTTAGGTCTGGTTCAAATCTATATAATGCAATTTCTTAGCTTAAAATTAGTCAAACATGGCCACTATTTTTTATATTCTTCTAGTGTACCAATTTCAGCTATCTCTTAGCAACATTCTTCGGCACAAGCTCTTTTTTATTTTACCATCTCTCCCTCTTTCTTGTGCGTGTATGAGTAGGGTGGGATGGGGATCATTTAAGGTTTACTTTCCTGGCAAATTTTGGGAACATTTTATGAATCAGATTTCTTGGACAATATTTTGATGTGGGTTTGCAAGAAATTCACTCTTTTCATGGTCAAATTTGGGGAATCTGATCAGACCTCTTTGCCAAGATTATGACATGATAGGCTTGCCATATATGCGAGAAGTTGGAGAGGGTAAAAGTAGTAATTTTCTTTTTGTCAATAAATGAAAAGAAAATACCCTGAAATTTCATCTCAAATTATGGTTTGGATAATACTTTAGCAATTTCTAAATTTGTTGGTTATTCTGTTTCTTATCCAAGGTCTTTTTTATTTTTATTTTAGCTCATCTTATCGTGTCCTTTTGTTGTAAAGGTACCTAAGTTTCTTATTCTTGTCTATGATATACTGTATTAACAAATAACATTTTTCTTCAGATTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACATCACCTTCCATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGCTTCTGGTCCTCAAAGGTAATCAATCCCATATTAGTCTACATTTCAGAATTAATTATTGCATCTGTAGCTTTATTGTTTACGTTTTTGCTTTGAGGCCACATATTCTATGCTTAAAGATATTTCAATGATGAAATCCATATACTCCATCAAACTAAAATAAAGTTTTCTTTAAATTATCTGCAGCGACCCTGATGTGAATCAACAGGCTTCATCTTCAGAATCTAATGAGGTATCTATCAAATTTCTGCTTAGTCATTCTTATCTTCCCCACATGTTTATATGTTTGATTCTCATATCTTGCCCCAAATGGTGCATCATATACAATAAGTACTCGTTTTTAAAGGAAAAATGTTAGTCAGAACAGACAAAGAAGGCCAATTTGTTCTAGTTTTTCTTGCTTCTTATTTGTACACCTCCTATTCTACTAATTTATTATCAATTTTTCAATTTCGTTCTTTTTTAAAAGAAAAATATTTAAATATTTTGATTGCAGAAGAGACAAGATTCGATTCATGCAGTTGGCAGTACCAAGTCCTTAGAGGATGAGCTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGCTGGTGAACTCATACGTAGTTTGCCATGTTTGCATCAGGTTTATCTCATCTCCTTACCTTTCCTTTTGAACAAATGGTTGCAGTTATAATATGTCGAAATTAGCTATCGTGTCGTCATCGTTCCCTTTCGTTTTAGTATTTGAAGACTCCTCTTGTGGCCCCCTCTTCCCTTTCATTTGAATTTGGTTATACATGGTTTCAATGTTGTAGTTCCATGCCAACTGCATAGATCCATGGCTGCGGCAGCAGGGAACATGCCCTGTTTGTAAATTTAGAGCGGCGCCCAGGTGGTCAGAACCGGGGCAAGGGGAAACCAACGCTTATATGGTTTAATTGGATTGGATGCAAAGCAAACATACCCGATTAAGAGCAGAGGTGATGTAATTAGGTGAAGTTTGAGGGTAGGAACTACAGGAATTGCGACTTTCAGTGTCTTTAAACTTCTGACGAGCCATTTGATTGTATTCTTGATGTTGTTAATCATTTGTGATGATCTAATTTTCTTCTTTCACTATCTTCTATGTATTATTCCAATCTATACTAGCAAGTACTTATCAG

mRNA sequence

CGACGTCGTTCAACGAATTGAACTCTCCTTTTACCAGAAATCGAACCAAAGGAGGACTGAGCCGCGTCCGAGTCACCTCCTTCACTCGACTCGCTCCTTCCATCTTCTCCGTCGGTTTTCATTTTCCACATAATTTTAAGGCTCGTTGTCGATTTTGGACCATCAAAATCAACCCCATTTACTCGATTCTGTCCTGAACGGAGAAGCTTAGCATATTATGAGGCTATGAGCCTTTGATTCTCCAAACTCCACTTCCTATGTTAATTTTCGTTGAGTGATCCATTGATTTCTCGGGGCTGAGAATGATGAATGATGAATTAGTTATAGTAAGGAGATTCACATTTCTCTGACCTCAACCCTAAACTAGCTTTTGCAACTAATTCAGACATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGGTTTCTACCTGAGCGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGCATTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAACTCTCACCAGATGCCACCTAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAAGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGCCTTCTTGGTCACACTGAATTGAGGGTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTTTGCTTGATAGGGAATTCGATGATTTAGATTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACATCACCTTCCATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGCTTCTGGTCCTCAAAGCGACCCTGATGTGAATCAACAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCGATTCATGCAGTTGGCAGTACCAAGTCCTTAGAGGATGAGCTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGCTGGTGAACTCATACGTAGTTTGCCATGTTTGCATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGGCAGCAGGGAACATGCCCTGTTTGTAAATTTAGAGCGGCGCCCAGGTGGTCAGAACCGGGGCAAGGGGAAACCAACGCTTATATGGTTTAATTGGATTGGATGCAAAGCAAACATACCCGATTAAGAGCAGAGGTGATGTAATTAGGTGAAGTTTGAGGGTAGGAACTACAGGAATTGCGACTTTCAGTGTCTTTAAACTTCTGACGAGCCATTTGATTGTATTCTTGATGTTGTTAATCATTTGTGATGATCTAATTTTCTTCTTTCACTATCTTCTATGTATTATTCCAATCTATACTAGCAAGTACTTATCAG

Coding sequence (CDS)

ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGGTTTCTACCTGAGCGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCGAACTCACTTGCATTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAACTCTCACCAGATGCCACCTAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCGACTTGTCAACAACTTCAAGCTCAAGCCCAAGCTAGAGCTATGGCAGCTAGTGGCCTTCTTGGTCACACTGAATTGAGGGTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTTTGCTTGATAGGGAATTCGATGATTTAGATTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACATCACCTTCCATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGCTTCTGGTCCTCAAAGCGACCCTGATGTGAATCAACAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCGATTCATGCAGTTGGCAGTACCAAGTCCTTAGAGGATGAGCTTACATGCAGTGTTTGCTTGGAGCAAGTAAATGCTGGTGAACTCATACGTAGTTTGCCATGTTTGCATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGGCAGCAGGGAACATGCCCTGTTTGTAAATTTAGAGCGGCGCCCAGGTGGTCAGAACCGGGGCAAGGGGAAACCAACGCTTATATGGTTTAA

Protein sequence

MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDPDVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV

Homology

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BLAST of Sed0003735 vs. NCBI nr
Match: XP_008441380.1 (PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo] >ADN34069.1 protein binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 509.2 bits (1310), Expect = 2.2e-140
Identity = 257/275 (93.45%), Postives = 264/275 (96.00%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK SGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQDS++AVGSTK+ EDELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Sed0003735 vs. NCBI nr
Match: XP_023540467.1 (E3 ubiquitin-protein ligase SDIR1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 508.8 bits (1309), Expect = 2.9e-140
Identity = 256/275 (93.09%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGL GF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDNVPT+PSMSEEQINALPVHKYK SGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
             NQQASSSESNEKR DS++AVG TKSL+DELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 AANQQASSSESNEKRPDSVNAVGGTKSLQDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWL QQGTCPVCKFRA P WSE GQGET+AYMV
Sbjct: 241 IDPWLGQQGTCPVCKFRAVPAWSEQGQGETDAYMV 275

[Close]

BLAST of Sed0003735 vs. NCBI nr
Match: XP_038885371.1 (E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885372.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885373.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885374.1 E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida])

HSP 1 Score: 508.1 bits (1307), Expect = 4.9e-140
Identity = 256/275 (93.09%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK  GPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVPGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQD ++AVGSTK+ EDELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDLVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Sed0003735 vs. NCBI nr
Match: XP_022938667.1 (E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938669.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938670.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >KAG6578411.1 E3 ubiquitin-protein ligase SDIR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 506.9 bits (1304), Expect = 1.1e-139
Identity = 255/275 (92.73%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK SGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQDS +AVGSTK+ EDELTCSVCLEQVN GEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AY V
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Sed0003735 vs. NCBI nr
Match: XP_023551037.1 (E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551039.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551040.1 E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 506.9 bits (1304), Expect = 1.1e-139
Identity = 255/275 (92.73%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK SGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQDS +AVGSTK+ EDELTCSVCLEQVN GEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKTSEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AY V
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Sed0003735 vs. ExPASy Swiss-Prot
Match: Q9M2S6 (E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 1.9e-110
Identity = 214/273 (78.39%), Postives = 233/273 (85.35%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLS-GFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMP 60
           MSFVFRG+R  D+E+G S GFLPERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQMP
Sbjct: 1   MSFVFRGSR-GDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMP 60

Query: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATR 120
           PNFLLWLVLGVFLMATTLRMYATCQQLQA AQA+A AASGL  HTELR+H+PPSIALATR
Sbjct: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATR 120

Query: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSD 180
           GRLQGLRLQLALLDREFDDLDYETLRALDSDNV T+ SMSEE+INALPVHKYK   P++ 
Sbjct: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENG 180

Query: 181 PDVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHAN 240
             + +QAS+S S EK  DS  A  S K  EDELTCSVCLEQV  GE++R+LPCLHQFHA 
Sbjct: 181 CSLAKQASTSSSAEKMLDS--ANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 241 CIDPWLRQQGTCPVCKFRAAPRWSEPGQGETNA 273
           CIDPWLRQQGTCPVCKFRA   W E  + + +A
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDA 269

[Close]

BLAST of Sed0003735 vs. ExPASy Swiss-Prot
Match: Q5NCP0 (E3 ubiquitin-protein ligase RNF43 OS=Mus musculus OX=10090 GN=Rnf43 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.6e-11
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 204 STKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFR------ 263
           S  S      C++CLE+ + G+ +R + CLH+FH  C+DPWL Q  TCP+C F       
Sbjct: 262 SGSSCSSTPVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLCMFNIVEGDS 321

Query: 264 ------AAPRWSEPGQ 268
                 A+P + EPG+
Sbjct: 322 FSQAPAASPSYQEPGR 337

[Close]

BLAST of Sed0003735 vs. ExPASy Swiss-Prot
Match: Q68DV7 (E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens OX=9606 GN=RNF43 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.9e-11
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 204 STKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKF 257
           S  S      C++CLE+ + G+ +R + CLH+FH NC+DPWL Q  TCP+C F
Sbjct: 262 SGSSCSSAPVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLCMF 314

[Close]

BLAST of Sed0003735 vs. ExPASy Swiss-Prot
Match: Q8NC42 (E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens OX=9606 GN=RNF149 PE=2 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 1.3e-10
Identity = 29/60 (48.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 210 DELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCK---FRAAPRWSEPG 267
           D   C+VC+E     ++IR LPC H FH  CIDPWL    TCP+CK    +A   W EPG
Sbjct: 265 DAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGEPG 324

[Close]

BLAST of Sed0003735 vs. ExPASy Swiss-Prot
Match: P0DPR2 (E3 ubiquitin-protein ligase RNF43 OS=Xenopus tropicalis OX=8364 GN=rnf43 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-10
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 214 CSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKF 257
           C++CLE+   G+ +R LPC H++H  C+DPWLRQ  TCP+C +
Sbjct: 268 CAICLEEFTDGQELRILPCCHEYHLGCVDPWLRQNHTCPLCMY 310

[Close]

BLAST of Sed0003735 vs. ExPASy TrEMBL
Match: E5GC70 (Protein binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.1e-140
Identity = 257/275 (93.45%), Postives = 264/275 (96.00%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK SGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQDS++AVGSTK+ EDELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Sed0003735 vs. ExPASy TrEMBL
Match: A0A1S3B3A3 (E3 ubiquitin-protein ligase SDIR1 OS=Cucumis melo OX=3656 GN=LOC103485511 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.1e-140
Identity = 257/275 (93.45%), Postives = 264/275 (96.00%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK SGPQSD 
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDS 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQDS++AVGSTK+ EDELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AYMV
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275

[Close]

BLAST of Sed0003735 vs. ExPASy TrEMBL
Match: A0A6J1FER7 (E3 ubiquitin-protein ligase SDIR1 OS=Cucurbita moschata OX=3662 GN=LOC111444825 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 5.3e-140
Identity = 255/275 (92.73%), Postives = 263/275 (95.64%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGLSGF+PERRAMRVHAARPVNSNSLAFLVTVLLLFM+LNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDN PT+PSMSEEQINALPVHKYK SGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
            VNQQASSSESNEKRQDS +AVGSTK+ EDELTCSVCLEQVN GEL+RSLPCLHQFHANC
Sbjct: 181 SVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWLRQQGTCPVCKFRA   WSE GQGET+AY V
Sbjct: 241 IDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYSV 275

[Close]

BLAST of Sed0003735 vs. ExPASy TrEMBL
Match: A0A6J1GTU0 (E3 ubiquitin-protein ligase SDIR1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457441 PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 9.0e-140
Identity = 255/275 (92.73%), Postives = 262/275 (95.27%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGL GF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDNVPT+PSMSEEQINALPVHKYK SGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
             NQQASSSESNEKR DS++AV  TKSL+DELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWL QQGTCPVCKFRA P WSE GQGET+AYMV
Sbjct: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGETDAYMV 275

[Close]

BLAST of Sed0003735 vs. ExPASy TrEMBL
Match: A0A6J1JV67 (E3 ubiquitin-protein ligase SDIR1-like OS=Cucurbita maxima OX=3661 GN=LOC111487789 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.0e-139
Identity = 254/275 (92.36%), Postives = 262/275 (95.27%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
           MSFVFRGTRVPDIENGL GF+PERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQM P
Sbjct: 1   MSFVFRGTRVPDIENGLPGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSP 60

Query: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATRG 120
           NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELR+HMPPSIALATRG
Sbjct: 61  NFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRG 120

Query: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDP 180
           RLQGLRLQLALLDREFDDLDYETLRALDSDNVPT+PSMSEEQINALPVHKYK SGPQSDP
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDP 180

Query: 181 DVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANC 240
             NQQASSSESNEKR DS++AV  TKSL+DELTCSVCLEQVN GELIRSLPCLHQFHANC
Sbjct: 181 AANQQASSSESNEKRPDSVNAVSGTKSLQDELTCSVCLEQVNVGELIRSLPCLHQFHANC 240

Query: 241 IDPWLRQQGTCPVCKFRAAPRWSEPGQGETNAYMV 276
           IDPWL QQGTCPVCKFRA P WSE GQG+T+AYMV
Sbjct: 241 IDPWLGQQGTCPVCKFRAVPGWSEQGQGQTDAYMV 275

[Close]

BLAST of Sed0003735 vs. TAIR 10
Match: AT3G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 400.2 bits (1027), Expect = 1.3e-111
Identity = 214/273 (78.39%), Postives = 233/273 (85.35%), Query Frame = 0


Query: 1   MSFVFRGTRVPDIENGLS-GFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMP 60
           MSFVFRG+R  D+E+G S GFLPERRAMRVH ARPVNSNSLAFLVTVLLLFMILNSHQMP
Sbjct: 1   MSFVFRGSR-GDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMP 60

Query: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRVHMPPSIALATR 120
           PNFLLWLVLGVFLMATTLRMYATCQQLQA AQA+A AASGL  HTELR+H+PPSIALATR
Sbjct: 61  PNFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATR 120

Query: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSD 180
           GRLQGLRLQLALLDREFDDLDYETLRALDSDNV T+ SMSEE+INALPVHKYK   P++ 
Sbjct: 121 GRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTT-SMSEEEINALPVHKYKVLDPENG 180

Query: 181 PDVNQQASSSESNEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHAN 240
             + +QAS+S S EK  DS  A  S K  EDELTCSVCLEQV  GE++R+LPCLHQFHA 
Sbjct: 181 CSLAKQASTSSSAEKMLDS--ANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAG 240

Query: 241 CIDPWLRQQGTCPVCKFRAAPRWSEPGQGETNA 273
           CIDPWLRQQGTCPVCKFRA   W E  + + +A
Sbjct: 241 CIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDA 269

[Close]

BLAST of Sed0003735 vs. TAIR 10
Match: AT1G04790.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-12
Identity = 43/124 (34.68%), Postives = 59/124 (47.58%), Query Frame = 0


Query: 132 LDREFDDLDYETLRALDSDNVPTSPSMSEEQINALPVHKYKASGPQSDPDVNQQASSSES 191
           +DR+F + DYE L ALD +N                 H++   G  S   +N    S+  
Sbjct: 542 MDRDFTEDDYELLLALDENN-----------------HRH---GGASANRINNLPESTVQ 601

Query: 192 NEKRQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTC 251
            +  Q+               TC +CLE    G+ IR LPCLH+FH +CIDPWL +  +C
Sbjct: 602 TDNFQE---------------TCVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSC 630

Query: 252 PVCK 256
           PVCK
Sbjct: 662 PVCK 630

[Close]

BLAST of Sed0003735 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-11
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 161 EQINALPVHKYKASGPQSDPDVNQQASSSESNEKRQDSIHAVGSTKSLE---DELTCSVC 220
           E INALP HK+K    +S+ D N  ++S       +  + A G+        ++  C +C
Sbjct: 314 ESINALPTHKFKLKKSRSNGDDNGSSTS-------EGGVVAAGTDNERAISGEDAVCCIC 373

Query: 221 LEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAAPRWSE 265
           L +    E +R LPC H FH  C+D WL+   +CP+CK     + S+
Sbjct: 374 LAKYANNEELRELPCSHFFHKECVDKWLKINASCPLCKSEVGEKNSD 413

[Close]

BLAST of Sed0003735 vs. TAIR 10
Match: AT1G80400.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-11
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 150 DNVPTSPSMSEEQINALPVHKYKASGPQSDPDVNQQASSSESNEKRQDSIHAVGSTKS-- 209
           +N   +   + E INALPV+++K          ++  +  E +E+ +     +GS K   
Sbjct: 298 ENFSQTRGATAEAINALPVYRFK----------SKSRNDLEFSEEGEGGFLLLGSQKKRL 357

Query: 210 -LEDELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVCK 256
              ++ +C +CL +    E +R LPC H FH +C+D WL+   TCP+CK
Sbjct: 358 ISGEDASCCICLTRYGDDEQVRELPCSHVFHVDCVDKWLKINATCPLCK 396

[Close]

BLAST of Sed0003735 vs. TAIR 10
Match: AT5G56340.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 3.5e-11
Identity = 28/81 (34.57%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 195 RQDSIHAVGSTKSLEDELTCSVCLEQVNAGELIRSLPCLHQFHANCIDPWLRQQGTCPVC 254
           R++++ A+ + K +E  L CSVCL+    G   + +PC H+FH  CI PWL    +CPVC
Sbjct: 241 RKEAVEALPTVKIME-PLQCSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVC 300

Query: 255 KFRAAPRWSEPGQGETNAYMV 276
           +F       +  + +T++  V
Sbjct: 301 RFELPSSADDDDETKTDSERV 320

The following BLAST results are available for this feature:

BLAST of Sed0003735 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441380.1	2.2e-140	93.45	PREDICTED: E3 ubiquitin-protein ligase SDIR1 [Cucumis melo] >ADN34069.1 protein ...	[more]
XP_023540467.1	2.9e-140	93.09	E3 ubiquitin-protein ligase SDIR1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038885371.1	4.9e-140	93.09	E3 ubiquitin-protein ligase SDIR1 isoform X1 [Benincasa hispida] >XP_038885372.1...	[more]
XP_022938667.1	1.1e-139	92.73	E3 ubiquitin-protein ligase SDIR1 [Cucurbita moschata] >XP_022938669.1 E3 ubiqui...	[more]
XP_023551037.1	1.1e-139	92.73	E3 ubiquitin-protein ligase SDIR1 [Cucurbita pepo subsp. pepo] >XP_023551039.1 E...	[more]

BLAST of Sed0003735 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2S6	1.9e-110	78.39	E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 ...	[more]
Q5NCP0	7.6e-11	38.16	E3 ubiquitin-protein ligase RNF43 OS=Mus musculus OX=10090 GN=Rnf43 PE=1 SV=1	[more]
Q68DV7	9.9e-11	47.17	E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens OX=9606 GN=RNF43 PE=1 SV=1	[more]
Q8NC42	1.3e-10	48.33	E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens OX=9606 GN=RNF149 PE=2 SV=2	[more]
P0DPR2	2.2e-10	51.16	E3 ubiquitin-protein ligase RNF43 OS=Xenopus tropicalis OX=8364 GN=rnf43 PE=2 SV...	[more]

BLAST of Sed0003735 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GC70	1.1e-140	93.45	Protein binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3B3A3	1.1e-140	93.45	E3 ubiquitin-protein ligase SDIR1 OS=Cucumis melo OX=3656 GN=LOC103485511 PE=4 S...	[more]
A0A6J1FER7	5.3e-140	92.73	E3 ubiquitin-protein ligase SDIR1 OS=Cucurbita moschata OX=3662 GN=LOC111444825 ...	[more]
A0A6J1GTU0	9.0e-140	92.73	E3 ubiquitin-protein ligase SDIR1-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JV67	2.0e-139	92.36	E3 ubiquitin-protein ligase SDIR1-like OS=Cucurbita maxima OX=3661 GN=LOC1114877...	[more]

BLAST of Sed0003735 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55530.1	1.3e-111	78.39	RING/U-box superfamily protein	[more]
AT1G04790.1	2.4e-12	34.68	RING/U-box superfamily protein	[more]
AT4G32600.1	1.2e-11	32.71	RING/U-box superfamily protein	[more]
AT1G80400.1	3.5e-11	31.19	RING/U-box superfamily protein	[more]
AT5G56340.1	3.5e-11	34.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 146..250 e-value: 1.1E-5 score: 27.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..192
None	No IPR available	PANTHER	PTHR45977	TARGET OF ERK KINASE MPK-1	coord: 1..241
None	No IPR available	PANTHER	PTHR45977:SF4	E3 UBIQUITIN-PROTEIN LIGASE SDIR1	coord: 1..241
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 207..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003735.1	Sed0003735.1	mRNA
Sed0003735.2	Sed0003735.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009789	positive regulation of abscisic acid-activated signaling pathway
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity