Sed0003701 (gene) Chayote v1

Overview
NameSed0003701
Typegene
OrganismSechium edule (Chayote v1)
DescriptionDefensin-like protein 1
LocationLG09: 28273442 .. 28274353 (+)
RNA-Seq ExpressionSed0003701
SyntenySed0003701
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCTCCTCTGTCAATCGAGCTTCATTCTTCTTCATCCTTTGTATTGCTTTTCTTCTCATCGCTGGTAATGACTTCTTTATTCTCACCTATGCAACCTTTTCTTCTTTCTTTATTATTTCATCATAAATTTTTGGTTCATATTTATAAGCTTTCATCTTTAATTTTCTTTTTCTTTACTATTTTATCTATACAAAATTTAAGGAAAAAATATAAGATAAAAGACATGAACTTATTGATACTCAATTTGTGGAACAATGAACATGTATTTATTTAACTATCTTGAAACATTTTTAATATTCGCCTTAAATTTGACTCTAGGATCCCGAAATTGATATTAAGAGGTTTTATGAAGATTTTCTTTTTTTCATTACAAAAATTAATAATGTTTTGTGGAATTTTTCAAGACAAAAAATATTTGAGACTTGATTTGGAAAAGTAGTGCTTCTAAAACTATGCTTTTATAAATTTCTTTTTTAAGATACCCTCAATATTAAGAAAGTTGATATGCTCGATAACTATAAATTATTTATCATCTGAGAGAGTTTAGAATATGTATTTTTATGTAGTCATTTATAATCTTGGACAAACAGATTTTGATTTATTTACCTATAATAAAGATATTGTTGAAAAAACATTCTTGATTTTGGTTGTCATTGTGTAGGATTAGGGCCAAGGCAAGGAAATGCCATAAATTTACCATTGGTGTGTTTGGGAGCATGCTCAAGTTTCCCAAATTGTACCAAAGCTTGCATCATGAAAGGATTTGTGAAAGGTGGTGATTGTTTGGGCTTCAGGCTGATCATATATATATATATATATATATATGATCAGCCTGAAGCTTTTAATTCAATAAAACTACTCGTTACATTTCTTATCAATATTATATGTATGTCACCAAGACCATGA

mRNA sequence

ATGGCTTCCTCCTCTGTCAATCGAGCTTCATTCTTCTTCATCCTTTGTATTGCTTTTCTTCTCATCGCTGGATTAGGGCCAAGGCAAGGAAATGCCATAAATTTACCATTGGTGTGTTTGGGAGCATGCTCAAGTTTCCCAAATTGTACCAAAGCTTGCATCATGAAAGGATTTGTGAAAGGTGGTGATTGTTTGGGCTTCAGGCTGATCATATATATATATATATATATATATGATCAGCCTGAAGCTTTTAATTCAATAAAACTACTCGTTACATTTCTTATCAATATTATATGTATGTCACCAAGACCATGA

Coding sequence (CDS)

ATGGCTTCCTCCTCTGTCAATCGAGCTTCATTCTTCTTCATCCTTTGTATTGCTTTTCTTCTCATCGCTGGATTAGGGCCAAGGCAAGGAAATGCCATAAATTTACCATTGGTGTGTTTGGGAGCATGCTCAAGTTTCCCAAATTGTACCAAAGCTTGCATCATGAAAGGATTTGTGAAAGGTGGTGATTGTTTGGGCTTCAGGCTGATCATATATATATATATATATATATATGATCAGCCTGAAGCTTTTAATTCAATAAAACTACTCGTTACATTTCTTATCAATATTATATGTATGTCACCAAGACCATGA

Protein sequence

MASSSVNRASFFFILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGFRLIIYIYIYIYDQPEAFNSIKLLVTFLINIICMSPRP
Homology
BLAST of Sed0003701 vs. NCBI nr
Match: KAG6575964.1 (hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 1  MASSSVNRASFFFILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVK 60
          MASS   R+SF F+LC+AF+LIAGLG R G+AINL +VCLG CS  PNC  ACI  G  K
Sbjct: 1  MASSFAMRSSFSFLLCMAFVLIAGLGTRPGSAINLAVVCLGPCSKIPNCENACINAGHAK 60

Query: 61 GGDCLGF 68
          GG+CLGF
Sbjct: 61 GGECLGF 67

BLAST of Sed0003701 vs. NCBI nr
Match: XP_012448050.1 (PREDICTED: defensin-like protein 81 isoform X2 [Gossypium raimondii])

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-06
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  ++I  LGP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCL--IMIWNLGPVGVDAINVP-PCLGPCSAIPNCNQSCIDKGFPKGGVCIGF 67

BLAST of Sed0003701 vs. NCBI nr
Match: KAB1669065.1 (hypothetical protein ES319_1Z078900v1 [Gossypium barbadense] >KAG4192400.1 hypothetical protein ERO13_A07G154700v2 [Gossypium hirsutum] >TYI19655.1 hypothetical protein ES332_A07G179700v1 [Gossypium tomentosum])

HSP 1 Score: 60.8 bits (146), Expect = 7.8e-06
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +LI  LGP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCL--ILIWNLGPVGVDAINVP-PCLGPCSAIPNCHQSCIDKGFPKGGVCIGF 67

BLAST of Sed0003701 vs. NCBI nr
Match: XP_012448045.1 (PREDICTED: putative defensin-like protein 73 isoform X1 [Gossypium raimondii] >XP_016747797.1 putative defensin-like protein 73 [Gossypium hirsutum] >KAB2021935.1 hypothetical protein ES319_D07G174500v1 [Gossypium barbadense] >MBA0675022.1 hypothetical protein [Gossypium aridum] >TYG61904.1 hypothetical protein ES288_D07G186300v1 [Gossypium darwinii] >TYH63322.1 hypothetical protein ES332_D07G183900v1 [Gossypium tomentosum] >TYI74124.1 hypothetical protein E1A91_D07G178300v1 [Gossypium mustelinum])

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-05
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +     GP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCLIMIWNLVAGPVGVDAINVP-PCLGPCSAIPNCNQSCIDKGFPKGGVCIGF 69

BLAST of Sed0003701 vs. NCBI nr
Match: KAB1669066.1 (hypothetical protein ES319_1Z078900v1 [Gossypium barbadense] >KAG4192399.1 hypothetical protein ERO13_A07G154700v2 [Gossypium hirsutum] >PPS10815.1 hypothetical protein GOBAR_AA09820 [Gossypium barbadense] >TYH10488.1 hypothetical protein ES288_A07G180500v1 [Gossypium darwinii] >TYI19656.1 hypothetical protein ES332_A07G179700v1 [Gossypium tomentosum])

HSP 1 Score: 57.8 bits (138), Expect = 6.6e-05
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +     GP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCLILIWNLVAGPVGVDAINVP-PCLGPCSAIPNCHQSCIDKGFPKGGVCIGF 69

BLAST of Sed0003701 vs. ExPASy TrEMBL
Match: A0A5D2PWN7 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G179700v1 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +LI  LGP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCL--ILIWNLGPVGVDAINVP-PCLGPCSAIPNCHQSCIDKGFPKGGVCIGF 67

BLAST of Sed0003701 vs. ExPASy TrEMBL
Match: A0A5J5N825 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_1Z078900v1 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +LI  LGP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCL--ILIWNLGPVGVDAINVP-PCLGPCSAIPNCHQSCIDKGFPKGGVCIGF 67

BLAST of Sed0003701 vs. ExPASy TrEMBL
Match: A0A5D2K8R8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D07G183900v1 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +     GP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCLIMIWNLVAGPVGVDAINVP-PCLGPCSAIPNCNQSCIDKGFPKGGVCIGF 69

BLAST of Sed0003701 vs. ExPASy TrEMBL
Match: A0A1U8P9A9 (putative defensin-like protein 73 OS=Gossypium hirsutum OX=3635 GN=LOC107956790 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +     GP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCLIMIWNLVAGPVGVDAINVP-PCLGPCSAIPNCNQSCIDKGFPKGGVCIGF 69

BLAST of Sed0003701 vs. ExPASy TrEMBL
Match: A0A0D2NB34 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G184100 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 14 ILCIAFLLIAGLGPRQGNAINLPLVCLGACSSFPNCTKACIMKGFVKGGDCLGF 68
          ILC+  +     GP   +AIN+P  CLG CS+ PNC ++CI KGF KGG C+GF
Sbjct: 17 ILCLIMIWNLVAGPVGVDAINVP-PCLGPCSAIPNCNQSCIDKGFPKGGVCIGF 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6575964.18.3e-1665.67hypothetical protein SDJN03_26603, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_012448050.17.8e-0655.56PREDICTED: defensin-like protein 81 isoform X2 [Gossypium raimondii][more]
KAB1669065.17.8e-0657.41hypothetical protein ES319_1Z078900v1 [Gossypium barbadense] >KAG4192400.1 hypot... [more]
XP_012448045.13.9e-0551.85PREDICTED: putative defensin-like protein 73 isoform X1 [Gossypium raimondii] >X... [more]
KAB1669066.16.6e-0551.85hypothetical protein ES319_1Z078900v1 [Gossypium barbadense] >KAG4192399.1 hypot... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D2PWN73.8e-0657.41Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A07G179700v1 P... [more]
A0A5J5N8253.8e-0657.41Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_1Z078900v1 PE=4... [more]
A0A5D2K8R81.9e-0551.85Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D07G183900v1 P... [more]
A0A1U8P9A91.9e-0551.85putative defensin-like protein 73 OS=Gossypium hirsutum OX=3635 GN=LOC107956790 ... [more]
A0A0D2NB341.9e-0551.85Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G184100 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036574Knottin, scorpion toxin-like superfamilyGENE3D3.30.30.10coord: 32..72
e-value: 7.6E-6
score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003701.1Sed0003701.1mRNA