Sed0003700 (gene) Chayote v1

Overview


Name	Sed0003700
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrotransposon protein
Location	LG11: 23981776 .. 23983347 (+)
RNA-Seq Expression	Sed0003700
Synteny	Sed0003700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATTGTCTAGGTGCATTGGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAATTCGTGCCTCCTTTAGAAATAGGAAGGGTATCATCACAACGAACGTTCTTGCTGTATGCGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCTGCTGACTCTAGAGTTCTTAGGGATGCTTTATCTCGTAACAATGGATTTCAAGTCCCTCATGGTAATTAAGGACTAAAAGAAAATGCTACTTTCACTTATAGTGAATGTATAATAACCTAGTGTTTATTGATCCAGGATACTATTACCTTTGTGATGCGGGTTATCCAAATGCTGATGGATTCCTAGCTCCCTATAGAGGTGAACGTTATCATCTATCGGATTGGAGGGGTAGCAATCCACCATGGAATCCAAGAGAGTTTTTTAATAAGGCACACTCCTCGACACGAAATATAATAGAAAGAGCGTTCGGTGCATTAAAAAATCATTGGGCTATTCTGCGACACAAGTCTTACTATCCTTCAAAAGTGCAAGTGAAGATCATAACAGCTTGTTGTCTCCTACATAATTTAATATGTAGGGAGATGGGCTCTACGATTGGTTTAGAGATATTAGGGGAGAACGATGCTACACTATACCAAGAGGATATGGACGATACCCCAACGATTAATTTCGTCGAGACATTGCCTCTTTGGACTGCATTTCGAGATTCCATGGCCCAAAGAATGTTTGACACAGCCCAAAACTAGTAGGAATTAGACTTATAATTTTTTTTTAGTGACTATAACTTTTATGAATCATGAATGACATAATATGACTTTTATGGGAAATGATACTTGTCTTGTATTATATAATGAACGATACTAAATGAATGGTATTCCTTACTCTTTATCTCTTATGTACAACTTCCTTGTAGCAACATGGCTGCGATAGGGAGAAACATTCGACACAGTTGGACAACAATTGAAGATAGTACTTTAGTCCAATCACTAATCGAACTTGTACAAGAGGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAACTACCTGGATGTCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGGTTCAGGTATTAAAGAATAGTTATAATATAAAAAAATGAAATTTCAATTTATTTACGAATCGCATGTTCTTAATTTTTTCAGACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGAGGTGGGCGGTTCCCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCAACAAGTAG

mRNA sequence

ATGCAAAATTGTCTAGGTGCATTGGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAATTCGTGCCTCCTTTAGAAATAGGAAGGGTATCATCACAACGAACGTTCTTGCTGTATGCGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCTGCTGACTCTAGAGTTCTTAGGGATGCTTTATCTCGTAACAATGGATTTCAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAACTACCTGGATGTCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGAGGTGGGCGGTTCCCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCAACAAGTAG

Coding sequence (CDS)

ATGCAAAATTGTCTAGGTGCATTGGATGGTACTCATATAGAGTTACAAGTCCCAGTTGAAATTCGTGCCTCCTTTAGAAATAGGAAGGGTATCATCACAACGAACGTTCTTGCTGTATGCGCTCCAAGCGGAGAGTTCATATACGTACTAGCTGGGTGGGAGGGATCAGCTGCTGACTCTAGAGTTCTTAGGGATGCTTTATCTCGTAACAATGGATTTCAAGGGGGGTGGAGATCAGATAATGGTACTTTTAGGAATAAGTACCATAATGAACTACTTCGACTAATGCACCTAAAACTACCTGGATGTCCAATTACATCTACCACTGTGATTGACACTAGAGTGAAGAATCTGAAACGACAATACCAAGCTATTGCCGAGATGCTGGGCAATACTTGTAGTGGATTCGGTTGGAATGATAAATACAAGTGCATTGAAGTGGAGCCAACTGTTTTCGACAATTGGACACACCCAAATGCAAAAGGTCTCAACAACAAGCCTTTTCCACATTACGATGACTTGGCTTATATTTTCGGAAAGGATAGAGCATGCGGGTCAATATCTCAGTCTGCTAGAGATATTGCAGAAGAAGATTCGAATGCAGAGGTCGGTGAGGTGGGCGGTTCCCAAGAATATTACATACCTGAGATTCCTGTTGCTGAAGAAGAAGACCCAAATACCCCCAACAAGTAG

Protein sequence

MQNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRVLRDALSRNNGFQGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNWTHPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARDIAEEDSNAEVGEVGGSQEYYIPEIPVAEEEDPNTPNK

Homology

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BLAST of Sed0003700 vs. NCBI nr
Match: KAA0052026.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04534.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-55
Identity = 115/212 (54.25%), Postives = 138/212 (65.09%), Query Frame = 0


Query: 6   GALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRVLRD 65
           GALDG +I++ V    RA +R  KG + TNVL VC   G+FIYVLAGWEGSAADSR+LRD
Sbjct: 55  GALDGMYIKINVIKSDRARYRTCKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRD 114

Query: 66  ALSRNNGFQ--------------------------------GGWRSDNGTFRNKYHNELL 125
           A+SR NG +                                GGWRSDN TF   Y N+L 
Sbjct: 115 AISRPNGLKVPRQSSSRLPKHNWTKKEEAGLIECLVELVNVGGWRSDNRTFWLGYLNQLA 174

Query: 126 RLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFD 185
           R+M LK+PG  I ++T ID+R+K LKR + +IAEM G TCSGFGWND+ KCI VE   FD
Sbjct: 175 RMMALKIPGSNIYAST-IDSRIKLLKRMFHSIAEMRGPTCSGFGWNDEQKCIVVEKEFFD 234

[Close]

BLAST of Sed0003700 vs. NCBI nr
Match: TYK04867.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-51
Identity = 108/231 (46.75%), Postives = 136/231 (58.87%), Query Frame = 0


Query: 2   QNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSR 61
           +NC GALD T+I++ VP   R +F   KG I TNVL VC   G+F+YVLAGWEGS  DS+
Sbjct: 135 ENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFVYVLAGWEGSVVDSQ 194

Query: 62  VLRDALSRNNGFQ----------------------------------------------- 121
           +LRDAL+R NG +                                               
Sbjct: 195 ILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGGGRHSCGVLNGVGVN 254

Query: 122 GGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCS 181
           GGW+SDNGTFR  Y  +L+ +M  KLPGC + +TTVID R+K LK+ +Q IAEM G  CS
Sbjct: 255 GGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACS 314

Query: 182 GFGWNDKYKCIEVEPTVFDNW--THPNAKGLNNKPFPHYDDLAYIFGKDRA 184
           GFGWND+ KCI  E  +FDNW  +HP AKGL NK F +YD+L Y+FG+D+A
Sbjct: 315 GFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDELTYVFGRDKA 365

[Close]

BLAST of Sed0003700 vs. NCBI nr
Match: KAA0062170.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-49
Identity = 111/231 (48.05%), Postives = 137/231 (59.31%), Query Frame = 0


Query: 2   QNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSA---- 61
           +NC GALD T+I++ VP   R +FR  KG I TNVL VC   G+F+YVLAGWEGS     
Sbjct: 71  ENCFGALDETYIKVNVPAVDRPTFRTCKGKIATNVLDVCDTKGDFVYVLAGWEGSVYVNL 130

Query: 62  --ADSRVLRD-------ALSRNNGFQGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITST 121
                  L +        +    G  GGW+ DNGTFR  Y  +L+R+M  KLPGC + +T
Sbjct: 131 NPCPETCLDEGGGGHSCGVLNGVGVNGGWKFDNGTFRPGYLAQLVRMMAEKLPGCRVRTT 190

Query: 122 TVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNW--THPNAKGLNNK 181
           TVID R+K LKR +QAIAEM G  CSGFGWND+ KCI  E  +FDNW   HP  KGL NK
Sbjct: 191 TVIDCRIKILKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRLHPTVKGLLNK 250

Query: 182 PFPHYDDLAYIFGKDRACG-------SISQSARDI-AEEDSNAEVGEVGGS 210
            F +YD+L Y+FG+D+A          I  S  D+ A   S+A  G  G S
Sbjct: 251 SFSYYDELTYVFGRDKATSLRHSSIQGIDMSQDDVCASRPSHASKGRTGSS 301

[Close]

BLAST of Sed0003700 vs. NCBI nr
Match: KAA0045638.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-48
Identity = 117/267 (43.82%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 3   NCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRV 62
           NCLGALDGT+I++ VP   R +FR RKG I TNVL VC   G+F+YVLAGWEGSAADSR+
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 63  LRDALSRNNGFQGG----------------WR---------------------------- 122
           LR     + G+                   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 123 ---SDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSG 182
               DN TFR  Y  +L+R+M  KLPGC + +TTVID R+K LKR +QAIAEM G  CSG
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 183 FGWNDKYKCIEVEPTVFDNW--THPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARD 216
            GWND+ KCI  +  +FDNW  +HP AKGL NK F +YD+L Y+FG++R    IS+ A  
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRV---ISRFAET 330

[Close]

BLAST of Sed0003700 vs. NCBI nr
Match: TYK02619.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-48
Identity = 117/267 (43.82%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 3   NCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRV 62
           NCLGALDGT+I++ VP   R +FR RKG I TNVL VC   G+F+YVLAGWEGSAADSR+
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 63  LRDALSRNNGFQGG----------------WR---------------------------- 122
           LR     + G+                   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 123 ---SDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSG 182
               DN TFR  Y  +L+R+M  KLPGC + +TTVID R+K LKR +QAIAEM G  CSG
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 183 FGWNDKYKCIEVEPTVFDNW--THPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARD 216
            GWND+ KCI  +  +FDNW  +HP AKGL NK F +YD+L Y+FG++R    IS+ A  
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRV---ISRFAET 330

[Close]

BLAST of Sed0003700 vs. ExPASy TrEMBL
Match: A0A5A7UCU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001560 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 3.3e-55
Identity = 115/212 (54.25%), Postives = 138/212 (65.09%), Query Frame = 0


Query: 6   GALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRVLRD 65
           GALDG +I++ V    RA +R  KG + TNVL VC   G+FIYVLAGWEGSAADSR+LRD
Sbjct: 55  GALDGMYIKINVIKSDRARYRTCKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRD 114

Query: 66  ALSRNNGFQ--------------------------------GGWRSDNGTFRNKYHNELL 125
           A+SR NG +                                GGWRSDN TF   Y N+L 
Sbjct: 115 AISRPNGLKVPRQSSSRLPKHNWTKKEEAGLIECLVELVNVGGWRSDNRTFWLGYLNQLA 174

Query: 126 RLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFD 185
           R+M LK+PG  I ++T ID+R+K LKR + +IAEM G TCSGFGWND+ KCI VE   FD
Sbjct: 175 RMMALKIPGSNIYAST-IDSRIKLLKRMFHSIAEMRGPTCSGFGWNDEQKCIVVEKEFFD 234

[Close]

BLAST of Sed0003700 vs. ExPASy TrEMBL
Match: A0A5D3BZA2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00580 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 108/231 (46.75%), Postives = 136/231 (58.87%), Query Frame = 0


Query: 2   QNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSR 61
           +NC GALD T+I++ VP   R +F   KG I TNVL VC   G+F+YVLAGWEGS  DS+
Sbjct: 135 ENCFGALDETYIKVNVPAVDRPTFTTCKGEIATNVLDVCDTKGDFVYVLAGWEGSVVDSQ 194

Query: 62  VLRDALSRNNGFQ----------------------------------------------- 121
           +LRDAL+R NG +                                               
Sbjct: 195 ILRDALARENGLRVPNGSLGHSSWKVVLSFYVNLNPCPEACLDEGGGRHSCGVLNGVGVN 254

Query: 122 GGWRSDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCS 181
           GGW+SDNGTFR  Y  +L+ +M  KLPGC + +TTVID R+K LK+ +Q IAEM G  CS
Sbjct: 255 GGWKSDNGTFRPGYLAQLVCMMAEKLPGCRVRTTTVIDCRIKILKQTFQVIAEMRGPACS 314

Query: 182 GFGWNDKYKCIEVEPTVFDNW--THPNAKGLNNKPFPHYDDLAYIFGKDRA 184
           GFGWND+ KCI  E  +FDNW  +HP AKGL NK F +YD+L Y+FG+D+A
Sbjct: 315 GFGWNDEEKCIIAEKELFDNWIRSHPTAKGLLNKSFSYYDELTYVFGRDKA 365

[Close]

BLAST of Sed0003700 vs. ExPASy TrEMBL
Match: A0A5A7V4E7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005480 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 9.4e-50
Identity = 111/231 (48.05%), Postives = 137/231 (59.31%), Query Frame = 0


Query: 2   QNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSA---- 61
           +NC GALD T+I++ VP   R +FR  KG I TNVL VC   G+F+YVLAGWEGS     
Sbjct: 71  ENCFGALDETYIKVNVPAVDRPTFRTCKGKIATNVLDVCDTKGDFVYVLAGWEGSVYVNL 130

Query: 62  --ADSRVLRD-------ALSRNNGFQGGWRSDNGTFRNKYHNELLRLMHLKLPGCPITST 121
                  L +        +    G  GGW+ DNGTFR  Y  +L+R+M  KLPGC + +T
Sbjct: 131 NPCPETCLDEGGGGHSCGVLNGVGVNGGWKFDNGTFRPGYLAQLVRMMAEKLPGCRVRTT 190

Query: 122 TVIDTRVKNLKRQYQAIAEMLGNTCSGFGWNDKYKCIEVEPTVFDNW--THPNAKGLNNK 181
           TVID R+K LKR +QAIAEM G  CSGFGWND+ KCI  E  +FDNW   HP  KGL NK
Sbjct: 191 TVIDCRIKILKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWIRLHPTVKGLLNK 250

Query: 182 PFPHYDDLAYIFGKDRACG-------SISQSARDI-AEEDSNAEVGEVGGS 210
            F +YD+L Y+FG+D+A          I  S  D+ A   S+A  G  G S
Sbjct: 251 SFSYYDELTYVFGRDKATSLRHSSIQGIDMSQDDVCASRPSHASKGRTGSS 301

[Close]

BLAST of Sed0003700 vs. ExPASy TrEMBL
Match: A0A5D3BWV2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00270 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 8.0e-49
Identity = 117/267 (43.82%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 3   NCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRV 62
           NCLGALDGT+I++ VP   R +FR RKG I TNVL VC   G+F+YVLAGWEGSAADSR+
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 63  LRDALSRNNGFQGG----------------WR---------------------------- 122
           LR     + G+                   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 123 ---SDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSG 182
               DN TFR  Y  +L+R+M  KLPGC + +TTVID R+K LKR +QAIAEM G  CSG
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 183 FGWNDKYKCIEVEPTVFDNW--THPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARD 216
            GWND+ KCI  +  +FDNW  +HP AKGL NK F +YD+L Y+FG++R    IS+ A  
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRV---ISRFAET 330

[Close]

BLAST of Sed0003700 vs. ExPASy TrEMBL
Match: A0A5A7TS15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001490 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 8.0e-49
Identity = 117/267 (43.82%), Postives = 148/267 (55.43%), Query Frame = 0


Query: 3   NCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRV 62
           NCLGALDGT+I++ VP   R +FR RKG I TNVL VC   G+F+YVLAGWEGSAADSR+
Sbjct: 91  NCLGALDGTYIKVNVPAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRI 150

Query: 63  LRDALSRNNGFQGG----------------WR---------------------------- 122
           LR     + G+                   WR                            
Sbjct: 151 LRYYYLCDAGYPNAEGFLVQDRGQRYHLQEWRGAANAPTNAKEYFNTKHSSTRNVIECAF 210

Query: 123 ---SDNGTFRNKYHNELLRLMHLKLPGCPITSTTVIDTRVKNLKRQYQAIAEMLGNTCSG 182
               DN TFR  Y  +L+R+M  KLPGC + +TTVID R+K LKR +QAIAEM G  CSG
Sbjct: 211 GVLKDNDTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSG 270

Query: 183 FGWNDKYKCIEVEPTVFDNW--THPNAKGLNNKPFPHYDDLAYIFGKDRACGSISQSARD 216
            GWND+ KCI  +  +FDNW  +HP AKGL NK F +YD+L Y+FG++R    IS+ A  
Sbjct: 271 SGWNDEEKCIIGKKELFDNWVRSHPAAKGLLNKSFLYYDELTYVFGRNRV---ISRFAET 330

[Close]

BLAST of Sed0003700 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-16
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 2  QNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSR 61
          ++C+GA+D THI   V  +   SFRNRKG I+ N+LA C    EF+YVL+GWEGSA DS+
Sbjct: 23 KDCVGAIDDTHIFAMVSQKKMPSFRNRKGDISQNMLAACNFDVEFMYVLSGWEGSAHDSK 82

Query: 62 VLRDALSRNN 72
          VL DAL+RN+
Sbjct: 83 VLNDALTRNS 92

[Close]

BLAST of Sed0003700 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 2   QNCLGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSR 61
           ++C+G +D  HI + V V+ +  FRN  G++T NVLA  +    F YVLAGWEGSA+D +
Sbjct: 141 KDCVGVVDSFHIPVMVGVDEQGPFRNGNGLLTQNVLAASSFDLRFNYVLAGWEGSASDQQ 200

Query: 62  VLRDALSRNNGFQ 75
           VL  AL+R N  Q
Sbjct: 201 VLNAALTRRNKLQ 213

[Close]

BLAST of Sed0003700 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 22/69 (31.88%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 5   LGALDGTHIELQVPVEIRASFRNRKGIITTNVLAVCAPSGEFIYVLAGWEGSAADSRVLR 64
           +GA+DGTH+ ++V  +++  + NR    + N++A+C     F Y+  G  GS  D+ VL+
Sbjct: 177 VGAMDGTHVCVKVKPDLQGMYWNRHDNASLNIMAICDLKMLFTYIWNGAPGSCYDTAVLQ 236

Query: 65  DALSRNNGF 74
            A   ++ F
Sbjct: 237 IAQQSDSEF 245

[Close]

BLAST of Sed0003700 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 5.9e-04
Identity = 19/24 (79.17%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 46 FIYVLAGWEGSAADSRVLRDALSR 70
          FIYVL+GWEGSA DSRVL DAL +
Sbjct: 25 FIYVLSGWEGSAHDSRVLSDALRK 48

The following BLAST results are available for this feature:

BLAST of Sed0003700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052026.1	6.9e-55	54.25	retrotransposon protein [Cucumis melo var. makuwa] >TYK04534.1 retrotransposon p...	[more]
TYK04867.1	2.7e-51	46.75	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062170.1	1.9e-49	48.05	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0045638.1	1.6e-48	43.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02619.1	1.6e-48	43.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0003700 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCU1	3.3e-55	54.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BZA2	1.3e-51	46.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4E7	9.4e-50	48.05	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BWV2	8.0e-49	43.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TS15	8.0e-49	43.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0003700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28950.1	1.8e-16	57.14	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G41980.1	2.4e-13	47.95	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]
AT1G43722.1	3.1e-05	31.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35695.1	5.9e-04	79.17	CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 73..152 e-value: 5.0E-5 score: 24.2
IPR027806	Harbinger transposase-derived nuclease domain	PFAM	PF13359	DDE_Tnp_4	coord: 8..65 e-value: 9.1E-10 score: 38.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..230
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 74..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003700.1	Sed0003700.1	mRNA