Sed0003624 (gene) Chayote v1

Overview


Name	Sed0003624
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Chitinase family protein
Location	LG11: 30809571 .. 30810032 (+)
RNA-Seq Expression	Sed0003624
Synteny	Sed0003624

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTCCAACTTCTTTTTCCTCTCCTTCATTTTTGTCCTTGGCATTGGCCTCCCAGCGACTGAGGGTCGTCGTCGAGGAGAGATACCTTCGGTATCTTCTCTGGTAAGTGAAAATCTTTACAAGAGTTTGTTTTTACACAAGGATGATAGTGTATGTCCTGCGAATGGATTCTATAGTTATGGAGCTTTCATCGAAGCAACGAAGAGGTTCCCCAAATTCGGCACGACTGGGTGTTTGGCCACACGCAAGCGGGAGATAGCTGCATTTTTGGCTCAGATCTCGCACGAGACGACGGGCGGGTGGGCGACTGCCCCGGATGGACCTTTTTCTTGGGGGCTGTGCTTTAAAGAGGAAGTGAATCCACAAAGCAACTATTGTGATGCCACTTCTAAGCAGTGGCCTTGCTCTCCAGGAAAGTCTTACAAAGGAAGAGGACCAATTCAACTATCATGGTAA

mRNA sequence

ATGACATATTCCAACTTCTTTTTCCTCTCCTTCATTTTTGTCCTTGGCATTGGCCTCCCAGCGACTGAGGGTCGTCGTCGAGGAGAGATACCTTCGGTATCTTCTCTGGTAAGTGAAAATCTTTACAAGAGTTTGTTTTTACACAAGGATGATAGTGTATGTCCTGCGAATGGATTCTATAGTTATGGAGCTTTCATCGAAGCAACGAAGAGGTTCCCCAAATTCGGCACGACTGGGTGTTTGGCCACACGCAAGCGGGAGATAGCTGCATTTTTGGCTCAGATCTCGCACGAGACGACGGGCGGGTGGGCGACTGCCCCGGATGGACCTTTTTCTTGGGGGCTGTGCTTTAAAGAGGAAGTGAATCCACAAAGCAACTATTGTGATGCCACTTCTAAGCAGTGGCCTTGCTCTCCAGGAAAGTCTTACAAAGGAAGAGGACCAATTCAACTATCATGGTAA

Coding sequence (CDS)

ATGACATATTCCAACTTCTTTTTCCTCTCCTTCATTTTTGTCCTTGGCATTGGCCTCCCAGCGACTGAGGGTCGTCGTCGAGGAGAGATACCTTCGGTATCTTCTCTGGTAAGTGAAAATCTTTACAAGAGTTTGTTTTTACACAAGGATGATAGTGTATGTCCTGCGAATGGATTCTATAGTTATGGAGCTTTCATCGAAGCAACGAAGAGGTTCCCCAAATTCGGCACGACTGGGTGTTTGGCCACACGCAAGCGGGAGATAGCTGCATTTTTGGCTCAGATCTCGCACGAGACGACGGGCGGGTGGGCGACTGCCCCGGATGGACCTTTTTCTTGGGGGCTGTGCTTTAAAGAGGAAGTGAATCCACAAAGCAACTATTGTGATGCCACTTCTAAGCAGTGGCCTTGCTCTCCAGGAAAGTCTTACAAAGGAAGAGGACCAATTCAACTATCATGGTAA

Protein sequence

MTYSNFFFLSFIFVLGIGLPATEGRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW

Homology

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BLAST of Sed0003624 vs. NCBI nr
Match: XP_038875572.1 (chitinase 10-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 9.5e-69
Identity = 127/152 (83.55%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPA-TEGR-RRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYS 63
           S F FLSFIF+LG GLP+ TEG  RR +I  VSSLVSE L+K+LFLHKDDS CPANGFYS
Sbjct: 3   SKFLFLSFIFLLGTGLPSMTEGHSRREKISRVSSLVSEKLFKTLFLHKDDSACPANGFYS 62

Query: 64  YGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEV 123
           Y AFIEAT RFPKFGTTGCLATRKRE+AAFLAQISHETTGGWATAPDGPF+WGLCFKEE+
Sbjct: 63  YQAFIEATTRFPKFGTTGCLATRKREVAAFLAQISHETTGGWATAPDGPFAWGLCFKEEI 122

Query: 124 NPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           NPQSNYCD + KQWPC PGKSYKGRGPIQLSW
Sbjct: 123 NPQSNYCDDSVKQWPCYPGKSYKGRGPIQLSW 154

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BLAST of Sed0003624 vs. NCBI nr
Match: XP_022993095.1 (chitinase 10-like [Cucurbita maxima])

HSP 1 Score: 263.8 bits (673), Expect = 8.9e-67
Identity = 123/154 (79.87%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPAT---EGRRR-GEIPSVSSLVSENLYKSLFLHKDDSVCPANGF 63
           S F FLSFIF+LG GLP+T    G RR  E   V+SL+SE L+K LFLHKDDS CPANGF
Sbjct: 3   STFLFLSFIFLLGTGLPSTIEAHGHRRWRERSRVASLISEELFKELFLHKDDSACPANGF 62

Query: 64  YSYGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKE 123
           YSY +FIEATK+FPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPF+WGLCFKE
Sbjct: 63  YSYQSFIEATKKFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKE 122

Query: 124 EVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           E++PQSNYCD + +QWPCSPGKSYKGRGPIQLSW
Sbjct: 123 EISPQSNYCDDSVEQWPCSPGKSYKGRGPIQLSW 156

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BLAST of Sed0003624 vs. NCBI nr
Match: XP_023550747.1 (chitinase 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 7.6e-66
Identity = 122/154 (79.22%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPAT---EGRRR-GEIPSVSSLVSENLYKSLFLHKDDSVCPANGF 63
           S F FLSFIF+L  GLP+T    G RR  E   V+SL+SE L+K LFLHKDDS CPANGF
Sbjct: 3   STFLFLSFIFLLWTGLPSTIEAHGHRRWRERSRVASLISEELFKELFLHKDDSACPANGF 62

Query: 64  YSYGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKE 123
           YSY +FIEATK+FPKFGTTGCLAT+KREIAAFLAQISHETTGGWATAPDGPF+WGLCFKE
Sbjct: 63  YSYQSFIEATKKFPKFGTTGCLATQKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKE 122

Query: 124 EVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           E++PQSNYCD + KQWPCSPGKSYKGRGPIQLSW
Sbjct: 123 EISPQSNYCDDSVKQWPCSPGKSYKGRGPIQLSW 156

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BLAST of Sed0003624 vs. NCBI nr
Match: XP_004149478.1 (chitinase 10 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 9.9e-66
Identity = 122/152 (80.26%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLP-ATEG-RRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYS 63
           S F FLSFI  LG  LP  TEG RRR +I  +SSL+SE L+K+LFLHKDD  CPANGFYS
Sbjct: 3   SKFLFLSFILFLGTSLPLMTEGHRRREKIYGISSLISEELFKTLFLHKDDGACPANGFYS 62

Query: 64  YGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEV 123
           Y AFIEAT RFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAP+GPF+WGLCFKEE+
Sbjct: 63  YQAFIEATWRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPNGPFAWGLCFKEEI 122

Query: 124 NPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           +PQSNYCD + K+WPCSPGKSYKGRGPIQLSW
Sbjct: 123 SPQSNYCDDSVKEWPCSPGKSYKGRGPIQLSW 154

[Close]

BLAST of Sed0003624 vs. NCBI nr
Match: KAG6579149.1 (Chitinase 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016667.1 Chitinase 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.9e-65
Identity = 121/154 (78.57%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPAT---EGRRR-GEIPSVSSLVSENLYKSLFLHKDDSVCPANGF 63
           S   FLSFIF+LG G P+T    G RR  E   V+SL+SE L+K LFLHKDDS CPANGF
Sbjct: 3   STLLFLSFIFLLGTGHPSTIEAHGHRRWRERSRVASLISEELFKELFLHKDDSACPANGF 62

Query: 64  YSYGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKE 123
           YSY +FIEATK+FPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPF+WGLCFKE
Sbjct: 63  YSYQSFIEATKKFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKE 122

Query: 124 EVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           E++PQSNYCD +  QWPCSPGKSYKGRGPIQLSW
Sbjct: 123 EISPQSNYCDDSVTQWPCSPGKSYKGRGPIQLSW 156

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BLAST of Sed0003624 vs. ExPASy Swiss-Prot
Match: Q5NB11 (Chitinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht10 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-56
Identity = 101/151 (66.89%), Postives = 115/151 (76.16%), Query Frame = 0


Query: 9   LSFIFVLGIGLPAT---EGRRRGEIPS---VSSLVSENLYKSLFLHKDDSVCPANGFYSY 68
           LS + V   G  A     G   G  PS   VSS+VSE LY SLFLHKDD+ CPA GFY+Y
Sbjct: 19  LSIVVVAASGAEARWYGGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTY 78

Query: 69  GAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVN 128
            +F+ A  RFP+F  TGC   RKRE+AAFLAQISHETTGGWATAPDGP++WGLC+KEE+N
Sbjct: 79  ASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEIN 138

Query: 129 PQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           PQS+YCDAT KQWPC PGKSY GRGPIQ+SW
Sbjct: 139 PQSSYCDATDKQWPCYPGKSYHGRGPIQISW 169

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BLAST of Sed0003624 vs. ExPASy Swiss-Prot
Match: Q09023 (Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.4e-45
Identity = 79/130 (60.77%), Postives = 96/130 (73.85%), Query Frame = 0


Query: 24  GRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLAT 83
           G   G    +S ++S + +  +  H++D+ CPA GFY+Y AFI A K FP FGTTG  AT
Sbjct: 62  GTPPGPTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTAT 121

Query: 84  RKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSY 143
           RK+EIAAF  Q SHETTGGWATAPDGP+SWG CFK+E NP SNYC + S +WPC+ GKSY
Sbjct: 122 RKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYC-SPSAEWPCASGKSY 181

Query: 144 KGRGPIQLSW 154
            GRGP+QLSW
Sbjct: 182 YGRGPMQLSW 190

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BLAST of Sed0003624 vs. ExPASy Swiss-Prot
Match: P19171 (Basic endochitinase B OS=Arabidopsis thaliana OX=3702 GN=CHI-B PE=1 SV=3)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-43
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 24  GRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLAT 83
           G   G    +S ++S + +  +  H++D+ CPA GFY+Y AFI A K FP FGTTG  AT
Sbjct: 77  GTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTAT 136

Query: 84  RKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSY 143
           RK+E+AAF  Q SHETTGGWATAPDGP+SWG CFK+E NP S+YC+  S  WPC+ GK Y
Sbjct: 137 RKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCE-PSATWPCASGKRY 196

Query: 144 KGRGPIQLSW 154
            GRGP+QLSW
Sbjct: 197 YGRGPMQLSW 205

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BLAST of Sed0003624 vs. ExPASy Swiss-Prot
Match: Q9FRV1 (Basic endochitinase A OS=Secale cereale OX=4550 GN=rsca PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-43
Identity = 83/137 (60.58%), Postives = 94/137 (68.61%), Query Frame = 0


Query: 16  GIGLPATEGRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKF 75
           G G P T          VSS+VS  L+  + LH++D  C A GFY+Y AF+ A   FP F
Sbjct: 63  GGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGF 122

Query: 76  GTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQW 135
           GTTG   TRKRE+AAFLAQ SHETTGGWATAPDG F+WG CFK+E    SNYC   S QW
Sbjct: 123 GTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYC-TPSAQW 182

Query: 136 PCSPGKSYKGRGPIQLS 153
           PC+PGKSY GRGPIQLS
Sbjct: 183 PCAPGKSYYGRGPIQLS 198

[Close]

BLAST of Sed0003624 vs. ExPASy Swiss-Prot
Match: Q7DNA1 (Chitinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht2 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-42
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 33  VSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLATRKREIAAFL 92
           V S+V  +L++ L LH++D  CPA GFY+Y AF+ A   FP FG TG   TRKRE+AAFL
Sbjct: 89  VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFL 148

Query: 93  AQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLS 152
            Q SHETTGGW TAPDGPFSWG CFK+E NP S+YC   S +WPC+PG+ Y GRGPIQLS
Sbjct: 149 GQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQ-PSPEWPCAPGRKYYGRGPIQLS 208

Query: 153 W 154
           +
Sbjct: 209 F 208

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BLAST of Sed0003624 vs. ExPASy TrEMBL
Match: A0A6J1JXK4 (chitinase 10-like OS=Cucurbita maxima OX=3661 GN=LOC111489215 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.3e-67
Identity = 123/154 (79.87%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPAT---EGRRR-GEIPSVSSLVSENLYKSLFLHKDDSVCPANGF 63
           S F FLSFIF+LG GLP+T    G RR  E   V+SL+SE L+K LFLHKDDS CPANGF
Sbjct: 3   STFLFLSFIFLLGTGLPSTIEAHGHRRWRERSRVASLISEELFKELFLHKDDSACPANGF 62

Query: 64  YSYGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKE 123
           YSY +FIEATK+FPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPF+WGLCFKE
Sbjct: 63  YSYQSFIEATKKFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKE 122

Query: 124 EVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           E++PQSNYCD + +QWPCSPGKSYKGRGPIQLSW
Sbjct: 123 EISPQSNYCDDSVEQWPCSPGKSYKGRGPIQLSW 156

[Close]

BLAST of Sed0003624 vs. ExPASy TrEMBL
Match: A0A0A0KPY3 (Glyco_hydro_19_cat domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G128240 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.8e-66
Identity = 122/152 (80.26%), Postives = 133/152 (87.50%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLP-ATEG-RRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYS 63
           S F FLSFI  LG  LP  TEG RRR +I  +SSL+SE L+K+LFLHKDD  CPANGFYS
Sbjct: 3   SKFLFLSFILFLGTSLPLMTEGHRRREKIYGISSLISEELFKTLFLHKDDGACPANGFYS 62

Query: 64  YGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEV 123
           Y AFIEAT RFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAP+GPF+WGLCFKEE+
Sbjct: 63  YQAFIEATWRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPNGPFAWGLCFKEEI 122

Query: 124 NPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           +PQSNYCD + K+WPCSPGKSYKGRGPIQLSW
Sbjct: 123 SPQSNYCDDSVKEWPCSPGKSYKGRGPIQLSW 154

[Close]

BLAST of Sed0003624 vs. ExPASy TrEMBL
Match: A0A6J1FEL0 (chitinase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111444802 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.4e-65
Identity = 121/154 (78.57%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPAT---EGRRR-GEIPSVSSLVSENLYKSLFLHKDDSVCPANGF 63
           S   FLSFIF+LG GLP+T    G RR  E   V+SL+SE L+K LFLHKD+S CPANGF
Sbjct: 3   STLLFLSFIFLLGPGLPSTIEAHGHRRWRERSRVASLISEELFKELFLHKDNSACPANGF 62

Query: 64  YSYGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKE 123
           YSY +FIEATK+FPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPF+WGLCFKE
Sbjct: 63  YSYQSFIEATKKFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKE 122

Query: 124 EVNPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           E++PQSNYCD +  QWPCSPGKSYKGRGPIQLSW
Sbjct: 123 EISPQSNYCDDSVTQWPCSPGKSYKGRGPIQLSW 156

[Close]

BLAST of Sed0003624 vs. ExPASy TrEMBL
Match: A0A1S3CQS5 (chitinase 10 OS=Cucumis melo OX=3656 GN=LOC103503712 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.0e-64
Identity = 121/152 (79.61%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 4   SNFFFLSFIFVLGIGLPA-TEG-RRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYS 63
           S   FLSFI +L   LP+ TE   RR +I  +SSL+SE L+K+LFLHKDDS CPANGFYS
Sbjct: 3   SKLLFLSFILLLLGSLPSMTESYGRREKICGISSLISEELFKTLFLHKDDSACPANGFYS 62

Query: 64  YGAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEV 123
           Y AFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPF+WGLCFKEE+
Sbjct: 63  YQAFIEATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEI 122

Query: 124 NPQSNYCDATSKQWPCSPGKSYKGRGPIQLSW 154
           +PQSNYCD + KQWPC PGKSYKGRGPIQLSW
Sbjct: 123 SPQSNYCDDSVKQWPCYPGKSYKGRGPIQLSW 154

[Close]

BLAST of Sed0003624 vs. ExPASy TrEMBL
Match: A0A5A7U2X7 (Chitinase 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00230 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.2e-62
Identity = 110/128 (85.94%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 26  RRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLATRK 85
           RR +I  +SSL+SE L+K+LFLHKDDS CPANGFYSY AFIEATKRFPKFGTTGCLATRK
Sbjct: 7   RREKICGISSLISEELFKTLFLHKDDSACPANGFYSYQAFIEATKRFPKFGTTGCLATRK 66

Query: 86  REIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSYKG 145
           REIAAFLAQISHETTGGWATAPDGPF+WGLCFKEE++PQSNYCD + KQWPC PGKSYKG
Sbjct: 67  REIAAFLAQISHETTGGWATAPDGPFAWGLCFKEEISPQSNYCDDSVKQWPCYPGKSYKG 126

Query: 146 RGPIQLSW 154
           RGPIQLSW
Sbjct: 127 RGPIQLSW 134

[Close]

BLAST of Sed0003624 vs. TAIR 10
Match: AT4G01700.1 (Chitinase family protein )

HSP 1 Score: 215.7 bits (548), Expect = 2.6e-56
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 9   LSFIFVLGIGLPATEGRRRGEI--PSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFI 68
           L FIF +   L  TE R+  +     + SLV   LY  +F+HKD++ CPA GFY Y AF+
Sbjct: 12  LLFIFSISSSLHETEARKHNKYKPAPIMSLVPRTLYDQIFIHKDNNACPAKGFYPYEAFV 71

Query: 69  EATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSN 128
           EAT+ FPKFG+ G   TR+RE+AAFLAQISHETTGGWATAPDGP++WGLCFKEEV+PQSN
Sbjct: 72  EATRSFPKFGSVGNFWTRRREVAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQSN 131

Query: 129 YCDATSKQWPCSPGKSYKGRGPIQLSW 154
           YCDA++K WPC  GKSYKGRGPIQLSW
Sbjct: 132 YCDASNKDWPCVSGKSYKGRGPIQLSW 158

[Close]

BLAST of Sed0003624 vs. TAIR 10
Match: AT1G02360.1 (Chitinase family protein )

HSP 1 Score: 203.0 bits (515), Expect = 1.7e-52
Identity = 87/147 (59.18%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 7   FFLSFIFVLGIGLPATEGRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFI 66
           FFLS  ++L           + E  S+  LV  +LY  +F+HKD++ CPANGFY+Y +F+
Sbjct: 12  FFLSISYLL--------SSAQTEATSIERLVPRDLYNKIFIHKDNTACPANGFYTYESFV 71

Query: 67  EATKRFPKFGTTGCLATRKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSN 126
           +AT+RFP+FG+ G   T++ E+AAFLAQISHETTGGWATAPDGP++WGLCFKEEV+PQS 
Sbjct: 72  QATRRFPRFGSVGSPVTQRLEVAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVSPQST 131

Query: 127 YCDATSKQWPCSPGKSYKGRGPIQLSW 154
           YCD++  QWPC P K+Y+GRGPIQLSW
Sbjct: 132 YCDSSDTQWPCFPNKTYQGRGPIQLSW 150

[Close]

BLAST of Sed0003624 vs. TAIR 10
Match: AT3G12500.1 (basic chitinase )

HSP 1 Score: 177.2 bits (448), Expect = 1.0e-44
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 24  GRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLAT 83
           G   G    +S ++S + +  +  H++D+ CPA GFY+Y AFI A K FP FGTTG  AT
Sbjct: 77  GTPPGPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTAT 136

Query: 84  RKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSY 143
           RK+E+AAF  Q SHETTGGWATAPDGP+SWG CFK+E NP S+YC+  S  WPC+ GK Y
Sbjct: 137 RKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCE-PSATWPCASGKRY 196

Query: 144 KGRGPIQLSW 154
            GRGP+QLSW
Sbjct: 197 YGRGPMQLSW 205

[Close]

BLAST of Sed0003624 vs. TAIR 10
Match: AT3G54420.1 (homolog of carrot EP3-3 chitinase )

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-21
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 0


Query: 32  SVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLATRKREIAAF 91
           SV+ +V++  +  + + +  S C  N FYS GAF+EA   + +FG  G     +REIAAF
Sbjct: 71  SVAEIVTQEFFNGI-ISQAASSCAGNRFYSRGAFLEALDSYSRFGRVGSTDDSRREIAAF 130

Query: 92  LAQISHETTGGWATAPDGPFSWGLCFKEEVNPQS-NYCDATSKQWPCSPGKSYKGRGPIQ 151
            A ++HET         G F    C+ EE++  S +YCD  + Q+PC+P K Y GRGPIQ
Sbjct: 131 FAHVTHET---------GHF----CYIEEIDGASKDYCDENATQYPCNPNKGYYGRGPIQ 179

Query: 152 LSW 154
           LSW
Sbjct: 191 LSW 179

[Close]

BLAST of Sed0003624 vs. TAIR 10
Match: AT2G43610.1 (Chitinase family protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-18
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 24  GRRRGEIPSVSSLVSENLYKSLFLHKDDSVCPANGFYSYGAFIEATKRFPKFGTTGCLAT 83
           G   G   +++S+++   + S+ + K  S CPA GFY+  AFI A + F  +  T     
Sbjct: 79  GLNAGPRGTIASVITPAFFNSI-MSKVGSGCPAKGFYTRQAFIAAAESFAAYKGT----V 138

Query: 84  RKREIAAFLAQISHETTGGWATAPDGPFSWGLCFKEEVNPQSNYCDATSKQWPCSPGKSY 143
            KREIAA LAQ SHE             S   C+KEE+  +  YC + S  +PC PGK+Y
Sbjct: 139 AKREIAAMLAQFSHE-------------SGSFCYKEEI-ARGRYC-SPSTTYPCQPGKNY 188

Query: 144 KGRGPIQLSW 154
            GRGPIQ++W
Sbjct: 199 YGRGPIQITW 188

The following BLAST results are available for this feature:

BLAST of Sed0003624 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875572.1	9.5e-69	83.55	chitinase 10-like [Benincasa hispida]	[more]
XP_022993095.1	8.9e-67	79.87	chitinase 10-like [Cucurbita maxima]	[more]
XP_023550747.1	7.6e-66	79.22	chitinase 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_004149478.1	9.9e-66	80.26	chitinase 10 [Cucumis sativus]	[more]
KAG6579149.1	4.9e-65	78.57	Chitinase 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016667.1 Chit...	[more]

BLAST of Sed0003624 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NB11	1.5e-56	66.89	Chitinase 10 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht10 PE=2 SV=1	[more]
Q09023	3.4e-45	60.77	Endochitinase CH25 OS=Brassica napus OX=3708 PE=2 SV=1	[more]
P19171	1.4e-43	58.46	Basic endochitinase B OS=Arabidopsis thaliana OX=3702 GN=CHI-B PE=1 SV=3	[more]
Q9FRV1	2.5e-43	60.58	Basic endochitinase A OS=Secale cereale OX=4550 GN=rsca PE=1 SV=1	[more]
Q7DNA1	1.2e-42	62.81	Chitinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht2 PE=1 SV=1	[more]

BLAST of Sed0003624 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXK4	4.3e-67	79.87	chitinase 10-like OS=Cucurbita maxima OX=3661 GN=LOC111489215 PE=4 SV=1	[more]
A0A0A0KPY3	4.8e-66	80.26	Glyco_hydro_19_cat domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5...	[more]
A0A6J1FEL0	2.4e-65	78.57	chitinase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111444802 PE=4 SV=1	[more]
A0A1S3CQS5	2.0e-64	79.61	chitinase 10 OS=Cucumis melo OX=3656 GN=LOC103503712 PE=4 SV=1	[more]
A0A5A7U2X7	3.2e-62	85.94	Chitinase 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00230 P...	[more]

BLAST of Sed0003624 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01700.1	2.6e-56	65.31	Chitinase family protein	[more]
AT1G02360.1	1.7e-52	59.18	Chitinase family protein	[more]
AT3G12500.1	1.0e-44	58.46	basic chitinase	[more]
AT3G54420.1	6.0e-21	41.46	homolog of carrot EP3-3 chitinase	[more]
AT2G43610.1	4.8e-18	39.23	Chitinase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000726	Glycoside hydrolase, family 19, catalytic	PFAM	PF00182	Glyco_hydro_19	coord: 36..153 e-value: 3.7E-49 score: 167.6
IPR000726	Glycoside hydrolase, family 19, catalytic	PROSITE	PS00773	CHITINASE_19_1	coord: 54..76
None	No IPR available	GENE3D	3.30.20.10	Endochitinase, domain 2	coord: 119..153 e-value: 3.7E-50 score: 172.6
None	No IPR available	GENE3D	1.10.530.10		coord: 36..118 e-value: 3.7E-50 score: 172.6
None	No IPR available	PANTHER	PTHR22595:SF101	OS05G0138200 PROTEIN	coord: 25..153
None	No IPR available	PANTHER	PTHR22595	CHITINASE-RELATED	coord: 25..153
None	No IPR available	CDD	cd00325	chitinase_GH19	coord: 37..153 e-value: 9.75079E-51 score: 159.903
IPR023346	Lysozyme-like domain superfamily	SUPERFAMILY	53955	Lysozyme-like	coord: 32..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003624.1	Sed0003624.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016998	cell wall macromolecule catabolic process
biological_process	GO:0006032	chitin catabolic process
biological_process	GO:0006952	defense response
biological_process	GO:0000272	polysaccharide catabolic process
molecular_function	GO:0004568	chitinase activity
molecular_function	GO:0008061	chitin binding