Sed0003617 (gene) Chayote v1

Overview


Name	Sed0003617
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG08: 4379086 .. 4379406 (+)
RNA-Seq Expression	Sed0003617
Synteny	Sed0003617

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTAGCACTTGTAATCCTCCTAGTCTGCATAGCTATTTTAGCACCATCGACGATGGCCGGTGCGATAGCTGTTGCGGATGCACCCGATCCAATGGTGATAGAAGATTTCTCACTGTTAGGATGCACGTCTTTTGTTTCGGATGCGACGAAATGCGTGATCGATGTGTTTAAGAATAAAATTGCTCCTCATCCTTCATGTTGCAAAGCCTTTTCTAACCTTAAAGATTGTTCATCTGACTTTCTTAAAGACATACCATCCGGTGATATGGTTTTAATTAAGAGTATTTGTACATTGTGGGGGGTTTCAATTTCTTAA

mRNA sequence

ATGAAGTTAGCACTTGTAATCCTCCTAGTCTGCATAGCTATTTTAGCACCATCGACGATGGCCGGTGCGATAGCTGTTGCGGATGCACCCGATCCAATGGTGATAGAAGATTTCTCACTGTTAGGATGCACGTCTTTTGTTTCGGATGCGACGAAATGCGTGATCGATGTGTTTAAGAATAAAATTGCTCCTCATCCTTCATGTTGCAAAGCCTTTTCTAACCTTAAAGATTGTTCATCTGACTTTCTTAAAGACATACCATCCGGTGATATGGTTTTAATTAAGAGTATTTGTACATTGTGGGGGGTTTCAATTTCTTAA

Coding sequence (CDS)

ATGAAGTTAGCACTTGTAATCCTCCTAGTCTGCATAGCTATTTTAGCACCATCGACGATGGCCGGTGCGATAGCTGTTGCGGATGCACCCGATCCAATGGTGATAGAAGATTTCTCACTGTTAGGATGCACGTCTTTTGTTTCGGATGCGACGAAATGCGTGATCGATGTGTTTAAGAATAAAATTGCTCCTCATCCTTCATGTTGCAAAGCCTTTTCTAACCTTAAAGATTGTTCATCTGACTTTCTTAAAGACATACCATCCGGTGATATGGTTTTAATTAAGAGTATTTGTACATTGTGGGGGGTTTCAATTTCTTAA

Protein sequence

MKLALVILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKNKIAPHPSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGVSIS

Homology

[Close]

BLAST of Sed0003617 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MKLALVILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKN 60
           MKL LV  LVCIAILA S MA   A+A A DP   E+FSLLGCTSF+S+AT C++DV KN
Sbjct: 4   MKLPLV-FLVCIAILAVSGMAHTGALAPA-DPFTAEEFSLLGCTSFISEATNCMVDVMKN 63

Query: 61  KIAPHPSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGV 104
            +APHPSCCKAFS L DCSS+FLK IPS DM+LIK IC LWGV
Sbjct: 64  AVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Sed0003617 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 4.1e-26
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MKLALVILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKN 60
           +KL LV   VC+AILA S +A   A A + DP   E+ SLLGCTSF+S+ATKCVIDV KN
Sbjct: 4   IKLPLV-FFVCMAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVMKN 63

Query: 61  KIAPHPSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGV 104
            +APHPSCCKAFS L DCS +FLK IPS DM+LIK IC LWGV
Sbjct: 64  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Sed0003617 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 9.0e-26
Identity = 68/103 (66.02%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MKLALVILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKN 60
           +KL LV   VC+AILA S +A   A A + DP   E  SLLGCTSF+S+ATKCVIDV KN
Sbjct: 4   IKLPLV-FFVCMAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVMKN 63

Query: 61  KIAPHPSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGV 104
            +APHPSCCKAFS L DCS +FLK IPS DM+LIK IC LWGV
Sbjct: 64  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Sed0003617 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 67/101 (66.34%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 6   VILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKNKIAPH 65
           ++LLVCIAILA S  A    VA A      EDFSL  C SFV  ATKCVIDV KN +APH
Sbjct: 11  LVLLVCIAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNAVAPH 70

Query: 66  PSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGVSIS 107
           PSCC+A S L DCSS FLKDIPS DM+L+KSIC  WGVSIS
Sbjct: 71  PSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Sed0003617 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 66/101 (65.35%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 6   VILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKNKIAPH 65
           ++L VCIAILA S  A    VA A      EDFSL  C SFV  ATKCVIDV KN +APH
Sbjct: 11  LVLRVCIAILASSVTACPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNVVAPH 70

Query: 66  PSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGVSIS 107
           PSCC+A + L DCSS FLKDIPSGDM+L+KSIC  WGVSIS
Sbjct: 71  PSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of Sed0003617 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.0e-26
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MKLALVILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKN 60
           +KL LV   VC+AILA S +A   A A + DP   E+ SLLGCTSF+S+ATKCVIDV KN
Sbjct: 4   IKLPLV-FFVCMAILAVSGIAHTGAAAPS-DPFTAEELSLLGCTSFISEATKCVIDVMKN 63

Query: 61  KIAPHPSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGV 104
            +APHPSCCKAFS L DCS +FLK IPS DM+LIK IC LWGV
Sbjct: 64  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Sed0003617 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.4e-26
Identity = 68/103 (66.02%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MKLALVILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKN 60
           +KL LV   VC+AILA S +A   A A + DP   E  SLLGCTSF+S+ATKCVIDV KN
Sbjct: 4   IKLPLV-FFVCMAILAVSGIAHTGAAAPS-DPFTAEKLSLLGCTSFISEATKCVIDVMKN 63

Query: 61  KIAPHPSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGV 104
            +APHPSCCKAFS L DCS +FLK IPS DM+LIK IC LWGV
Sbjct: 64  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Sed0003617 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.7e-25
Identity = 67/101 (66.34%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 6   VILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKNKIAPH 65
           ++LLVCIAILA S  A    VA A      EDFSL  C SFV  ATKCVIDV KN +APH
Sbjct: 11  LVLLVCIAILASSVTARPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNAVAPH 70

Query: 66  PSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGVSIS 107
           PSCC+A S L DCSS FLKDIPS DM+L+KSIC  WGVSIS
Sbjct: 71  PSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of Sed0003617 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 66/101 (65.35%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 6   VILLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKNKIAPH 65
           ++L VCIAILA S  A    VA A      EDFSL  C SFV  ATKCVIDV KN +APH
Sbjct: 11  LVLRVCIAILASSVTACPTIVAAATP--TSEDFSLFPCISFVPKATKCVIDVLKNVVAPH 70

Query: 66  PSCCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGVSIS 107
           PSCC+A + L DCSS FLKDIPSGDM+L+KSIC  WGVSIS
Sbjct: 71  PSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of Sed0003617 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 65/99 (65.66%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 8   LLVCIAILAPSTMAGAIAVADAPDPMVIEDFSLLGCTSFVSDATKCVIDVFKNKIAPHPS 67
           LL CI ILA S MA  + VA A     I D SL  C SFV  AT+CVIDV KN +APHPS
Sbjct: 12  LLFCIFILASSVMARPVTVAAAAP---IGDISLFPCKSFVPKATECVIDVLKNAVAPHPS 71

Query: 68  CCKAFSNLKDCSSDFLKDIPSGDMVLIKSICTLWGVSIS 107
           CC+A S L DCSS FLKDIPS DM+L+KSIC LWGVSIS
Sbjct: 72  CCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

The following BLAST results are available for this feature:

BLAST of Sed0003617 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653021.1	1.5e-28	69.90	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	4.1e-26	66.02	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	9.0e-26	66.02	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
TYK10345.1	3.4e-25	66.34	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	1.3e-24	65.35	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0003617 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG41	2.0e-26	66.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U483	4.4e-26	66.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CFS6	1.7e-25	66.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	6.3e-25	65.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	1.8e-24	65.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0003617 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003617.1	Sed0003617.1	mRNA