Sed0003612 (gene) Chayote v1

Overview


Name	Sed0003612
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIE subunit alpha-like
Location	LG04: 3835839 .. 3836947 (-)
RNA-Seq Expression	Sed0003612
Synteny	Sed0003612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACACAGACCCGCCTGCCTAAATCTTTACCCTTAAATTATTCCTTTTCCAACCAATGCCTCAAAATTTAACAGACAATAAATAAAAACCCAAATTCCATTCTCTGTAACCATTGTCCTTATAAAAACCCCACTTCTCAAAACACCCAAATTCCCCAAACATGAAATTGATCAGTAGAGAAATGAAAGCAATCCCCTCTGCGGATTTGCTCCTCTGTTTCCCTTCTCGACCGCATTTGCCTTTGATGCCAAACCCGCTTTGTAGCCCCGCGAGGGGCCCCGATCGCGGCCGACACCACCGGCATCGGCGGAGGAAATCCGCCGAGAGCCCGGTGGTGTGGGCGAAAGGGAAGACGATGGGGGCGGAGGTATCGGAACCTTCGTCGCCGAAAGTGACATGTGCAGGGCAGGTTAAGATCAGGCCGACGAGCAGCAAGAGGTGGGAATCCGTTGGGTCGAGTTGGGTCGAGTCTTTGGGGTTCAAGAAAGATATAATGCAATTCTTGACGTGTTTGCGAAAATTCCGATTCGATTTTCGATGCTTTAGAGCTTTCCCGGGAACGGAATTGACGTCGGAGGATGATGAAGAAGAAGAAGAAAGAAATGCATTTTCTAAATGGGTTATGGTTTTGGAGGAAAATGAGGCTGGAAATGATGATGGTTCGGTCGAGCCGCCCGAAAATGCGCTTGTGCTAATGCGGTGTCGGTCGGCTCCGGCGAAGAGTTGGGTGGAATTCGAAGAGGAAGAAGAAGTGAAGGTGAAGAAAAGCTTGAAATGGCTAATGGAGGAAGAGAGCAGAGAGTCATTGGGGTCGGATTTGTTATTGAGGAGTCGAAGTTGGAAAGTTTGAGAAAGCTGCTTTGGTTTTTTCTTTTCTTTTTTTTAATGCTTTTGGATATTTTTAAAAAGTTGTTGAGTCTGAATCTCTGAGTATTATTGGTTATAGTTGTTTGTTGTGTACAGTAAATTTCATAGTTTTCCATTGGAGAGGATTTTATTGTAATTTGTGGAGGAGAAACGTTTATAGAGTCAAATAAGATTAAAATATTGGGTTGTTATTGTTGAGATATGCCTTGAACCCACCAATGTCCTCCAATTAGTATTTGGG

mRNA sequence

GAAACACAGACCCGCCTGCCTAAATCTTTACCCTTAAATTATTCCTTTTCCAACCAATGCCTCAAAATTTAACAGACAATAAATAAAAACCCAAATTCCATTCTCTGTAACCATTGTCCTTATAAAAACCCCACTTCTCAAAACACCCAAATTCCCCAAACATGAAATTGATCAGTAGAGAAATGAAAGCAATCCCCTCTGCGGATTTGCTCCTCTGTTTCCCTTCTCGACCGCATTTGCCTTTGATGCCAAACCCGCTTTGTAGCCCCGCGAGGGGCCCCGATCGCGGCCGACACCACCGGCATCGGCGGAGGAAATCCGCCGAGAGCCCGGTGGTGTGGGCGAAAGGGAAGACGATGGGGGCGGAGGTATCGGAACCTTCGTCGCCGAAAGTGACATGTGCAGGGCAGGTTAAGATCAGGCCGACGAGCAGCAAGAGGTGGGAATCCGTTGGGTCGAGTTGGGTCGAGTCTTTGGGGTTCAAGAAAGATATAATGCAATTCTTGACGTGTTTGCGAAAATTCCGATTCGATTTTCGATGCTTTAGAGCTTTCCCGGGAACGGAATTGACGTCGGAGGATGATGAAGAAGAAGAAGAAAGAAATGCATTTTCTAAATGGGTTATGGTTTTGGAGGAAAATGAGGCTGGAAATGATGATGGTTCGGTCGAGCCGCCCGAAAATGCGCTTGTGCTAATGCGGTGTCGGTCGGCTCCGGCGAAGAGTTGGGTGGAATTCGAAGAGGAAGAAGAAGTGAAGGTGAAGAAAAGCTTGAAATGGCTAATGGAGGAAGAGAGCAGAGAGTCATTGGGGTCGGATTTGTTATTGAGGAGTCGAAGTTGGAAAGTTTGAGAAAGCTGCTTTGGTTTTTTCTTTTCTTTTTTTTAATGCTTTTGGATATTTTTAAAAAGTTGTTGAGTCTGAATCTCTGAGTATTATTGGTTATAGTTGTTTGTTGTGTACAGTAAATTTCATAGTTTTCCATTGGAGAGGATTTTATTGTAATTTGTGGAGGAGAAACGTTTATAGAGTCAAATAAGATTAAAATATTGGGTTGTTATTGTTGAGATATGCCTTGAACCCACCAATGTCCTCCAATTAGTATTTGGG

Coding sequence (CDS)

ATGAAATTGATCAGTAGAGAAATGAAAGCAATCCCCTCTGCGGATTTGCTCCTCTGTTTCCCTTCTCGACCGCATTTGCCTTTGATGCCAAACCCGCTTTGTAGCCCCGCGAGGGGCCCCGATCGCGGCCGACACCACCGGCATCGGCGGAGGAAATCCGCCGAGAGCCCGGTGGTGTGGGCGAAAGGGAAGACGATGGGGGCGGAGGTATCGGAACCTTCGTCGCCGAAAGTGACATGTGCAGGGCAGGTTAAGATCAGGCCGACGAGCAGCAAGAGGTGGGAATCCGTTGGGTCGAGTTGGGTCGAGTCTTTGGGGTTCAAGAAAGATATAATGCAATTCTTGACGTGTTTGCGAAAATTCCGATTCGATTTTCGATGCTTTAGAGCTTTCCCGGGAACGGAATTGACGTCGGAGGATGATGAAGAAGAAGAAGAAAGAAATGCATTTTCTAAATGGGTTATGGTTTTGGAGGAAAATGAGGCTGGAAATGATGATGGTTCGGTCGAGCCGCCCGAAAATGCGCTTGTGCTAATGCGGTGTCGGTCGGCTCCGGCGAAGAGTTGGGTGGAATTCGAAGAGGAAGAAGAAGTGAAGGTGAAGAAAAGCTTGAAATGGCTAATGGAGGAAGAGAGCAGAGAGTCATTGGGGTCGGATTTGTTATTGAGGAGTCGAAGTTGGAAAGTTTGA

Protein sequence

MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHRHRRRKSAESPVVWAKGKTMGAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGSSWVESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEERNAFSKWVMVLEENEAGNDDGSVEPPENALVLMRCRSAPAKSWVEFEEEEEVKVKKSLKWLMEEESRESLGSDLLLRSRSWKV

Homology

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BLAST of Sed0003612 vs. NCBI nr
Match: XP_038898663.1 (transcription initiation factor IIE subunit alpha [Benincasa hispida])

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-74
Identity = 172/318 (54.09%), Postives = 193/318 (60.69%), Query Frame = 0


Query: 4   ISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGR-----HHRHRRRKSAESPV 63
           + RE K IPSADLL+CFPSR HL LMPNPLCSPARG D  +      H HRRRKSAESPV
Sbjct: 3   LGRENKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLSHRHYHRRRKSAESPV 62

Query: 64  VWAKGKTMGAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGSS----------------WV 123
           VWAK KTMG+E+SEPSSPKVTCAGQ+KIRP +SK W+SV                   WV
Sbjct: 63  VWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRFHWV 122

Query: 124 ESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEE---------------- 183
           ESLGFKKDIMQFLTCLR  RFDFRCFRAFP T+ T+E++EEEEE                
Sbjct: 123 ESLGFKKDIMQFLTCLRNIRFDFRCFRAFPATDFTTEEEEEEEEEEEEKSQGNQVGVDEN 182

Query: 184 ---RNAFSKWVMVLEENEA-----------GNDDGSVE----PPENALVLMRCRSAPAKS 230
              R AFSKW MVL+EN +            +DD S+E    PP+NAL+LMRCRSAPAK 
Sbjct: 183 ESSRTAFSKWFMVLQENGSNELKRESKILCSDDDVSIEAAMAPPKNALLLMRCRSAPAKR 242

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BLAST of Sed0003612 vs. NCBI nr
Match: XP_008444111.1 (PREDICTED: uncharacterized protein LOC103487551 [Cucumis melo] >KAA0064246.1 transcription initiation factor IIE subunit alpha-like [Cucumis melo var. makuwa] >TYK18616.1 transcription initiation factor IIE subunit alpha-like [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.9e-73
Identity = 171/302 (56.62%), Postives = 194/302 (64.24%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGR----HHR-HRRRKSAE 60
           MKL   + K IPSADLL+CFPSR HL LMPNPLCSPARG D  +    H R HRRRKSAE
Sbjct: 8   MKLNREKSKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDHRRFHRRRKSAE 67

Query: 61  SPVVWAKGKTMGAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGSS--------------- 120
           SPVVWAK KTMG+E+SEPSSPKVTCAGQ+KIRP +SK W+SV                  
Sbjct: 68  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 127

Query: 121 -WVESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEE------------- 180
            WVES GFKKDIMQFLTCLR  RFDFRCFRAFP T+ T+E++EEEEE             
Sbjct: 128 RWVESFGFKKDIMQFLTCLRTIRFDFRCFRAFPETDFTTEEEEEEEEEEEDEKNQVGIEE 187

Query: 181 ----RNAFSKWVMVLEENEA-----------GNDDGSVE----PPENALVLMRCRSAPAK 230
               R AFSKW MVL+EN +             DD S+E    PP NAL+LMRCRSAPA+
Sbjct: 188 NESSRTAFSKWFMVLQENGSNELKRDSKSLCNEDDESIEAIMAPPINALLLMRCRSAPAR 247

[Close]

BLAST of Sed0003612 vs. NCBI nr
Match: XP_023535965.1 (uncharacterized protein LOC111797241 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023535966.1 uncharacterized protein LOC111797241 isoform X4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-72
Identity = 171/272 (62.87%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHR-HRRRKSAESPVV 60
           MKLI R+ KA PS DLL+CFPSR H  LMPNPLCSPAR  D  +  R HRRR+SAESPVV
Sbjct: 1   MKLI-RDTKANPSPDLLVCFPSRSHFALMPNPLCSPARASDSNKLRRYHRRRRSAESPVV 60

Query: 61  WAKGKTM-GAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGS----------------SWV 120
           WAK KTM G+EVSEPSSPKVTCAGQ+K+RP S K WESV                  +WV
Sbjct: 61  WAKAKTMGGSEVSEPSSPKVTCAGQIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWV 120

Query: 121 ESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEE--------ERNAFSKWV 180
           ESLGFKKDIMQFLTCLR  RFDF CF AFP  E TSED+EEE+         R AFSKW 
Sbjct: 121 ESLGFKKDIMQFLTCLRSLRFDFGCFGAFPEAEFTSEDEEEEDVAVQGSDGSRTAFSKWF 180

Query: 181 MVLEEN---EAGN-----DDGSV----EPPENALVLMRCRSAPAKSWV-----EFEEEEE 230
           MVL+ +     GN     DD S+     PP NAL+LMRCRSAPAKSWV     E EEE E
Sbjct: 181 MVLQGSGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEEEETE 240

[Close]

BLAST of Sed0003612 vs. NCBI nr
Match: XP_023535963.1 (uncharacterized protein LOC111797241 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023535964.1 uncharacterized protein LOC111797241 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-72
Identity = 171/272 (62.87%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHR-HRRRKSAESPVV 60
           MKLI R+ KA PS DLL+CFPSR H  LMPNPLCSPAR  D  +  R HRRR+SAESPVV
Sbjct: 1   MKLI-RDTKANPSPDLLVCFPSRSHFALMPNPLCSPARASDSNKLRRYHRRRRSAESPVV 60

Query: 61  WAKGKTM-GAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGS----------------SWV 120
           WAK KTM G+EVSEPSSPKVTCAGQ+K+RP S K WESV                  +WV
Sbjct: 61  WAKAKTMGGSEVSEPSSPKVTCAGQIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWV 120

Query: 121 ESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEE--------ERNAFSKWV 180
           ESLGFKKDIMQFLTCLR  RFDF CF AFP  E TSED+EEE+         R AFSKW 
Sbjct: 121 ESLGFKKDIMQFLTCLRSLRFDFGCFGAFPEAEFTSEDEEEEDVAVEGSDGSRTAFSKWF 180

Query: 181 MVLEEN---EAGN-----DDGSV----EPPENALVLMRCRSAPAKSWV-----EFEEEEE 230
           MVL+ +     GN     DD S+     PP NAL+LMRCRSAPAKSWV     E EEE E
Sbjct: 181 MVLQGSGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEEEETE 240

[Close]

BLAST of Sed0003612 vs. NCBI nr
Match: XP_022977179.1 (uncharacterized protein LOC111477333 [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-72
Identity = 171/272 (62.87%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHR-HRRRKSAESPVV 60
           MKLI R++KAIPS DLL+CFPSR H  LMPNPLCSP R  D  +  R HRRRKSAESPVV
Sbjct: 1   MKLI-RDIKAIPSPDLLVCFPSRSHFALMPNPLCSPVRASDSNKLRRYHRRRKSAESPVV 60

Query: 61  WAKGKTM-GAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGS----------------SWV 120
           WAK KT+ G+EVSEPSSPKVTCAGQ+K+R  S K WESV                  +WV
Sbjct: 61  WAKAKTIGGSEVSEPSSPKVTCAGQIKMRRKSRKSWESVMEEIERIHNRRELRRRRFNWV 120

Query: 121 ESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEE--------ERNAFSKWV 180
           ESLGFKKDIMQFLTCLR  RFDF CF AFP  E TSED+EEEE         R AFSKW 
Sbjct: 121 ESLGFKKDIMQFLTCLRSIRFDFGCFGAFPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWF 180

Query: 181 MVLEEN---EAGN-----DDGSV----EPPENALVLMRCRSAPAKSWV-----EFEEEEE 230
           MVL+ +     GN     DD S+     PP NAL+LMRCRSAPAKSWV     E EE+ E
Sbjct: 181 MVLQGSGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEACSEEEEDTE 240

[Close]

BLAST of Sed0003612 vs. ExPASy TrEMBL
Match: A0A5D3D503 (Transcription initiation factor IIE subunit alpha-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001490 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 9.3e-74
Identity = 171/302 (56.62%), Postives = 194/302 (64.24%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGR----HHR-HRRRKSAE 60
           MKL   + K IPSADLL+CFPSR HL LMPNPLCSPARG D  +    H R HRRRKSAE
Sbjct: 8   MKLNREKSKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDHRRFHRRRKSAE 67

Query: 61  SPVVWAKGKTMGAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGSS--------------- 120
           SPVVWAK KTMG+E+SEPSSPKVTCAGQ+KIRP +SK W+SV                  
Sbjct: 68  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 127

Query: 121 -WVESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEE------------- 180
            WVES GFKKDIMQFLTCLR  RFDFRCFRAFP T+ T+E++EEEEE             
Sbjct: 128 RWVESFGFKKDIMQFLTCLRTIRFDFRCFRAFPETDFTTEEEEEEEEEEEDEKNQVGIEE 187

Query: 181 ----RNAFSKWVMVLEENEA-----------GNDDGSVE----PPENALVLMRCRSAPAK 230
               R AFSKW MVL+EN +             DD S+E    PP NAL+LMRCRSAPA+
Sbjct: 188 NESSRTAFSKWFMVLQENGSNELKRDSKSLCNEDDESIEAIMAPPINALLLMRCRSAPAR 247

[Close]

BLAST of Sed0003612 vs. ExPASy TrEMBL
Match: A0A1S3B949 (uncharacterized protein LOC103487551 OS=Cucumis melo OX=3656 GN=LOC103487551 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 9.3e-74
Identity = 171/302 (56.62%), Postives = 194/302 (64.24%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGR----HHR-HRRRKSAE 60
           MKL   + K IPSADLL+CFPSR HL LMPNPLCSPARG D  +    H R HRRRKSAE
Sbjct: 8   MKLNREKSKGIPSADLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDHRRFHRRRKSAE 67

Query: 61  SPVVWAKGKTMGAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGSS--------------- 120
           SPVVWAK KTMG+E+SEPSSPKVTCAGQ+KIRP +SK W+SV                  
Sbjct: 68  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 127

Query: 121 -WVESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEE------------- 180
            WVES GFKKDIMQFLTCLR  RFDFRCFRAFP T+ T+E++EEEEE             
Sbjct: 128 RWVESFGFKKDIMQFLTCLRTIRFDFRCFRAFPETDFTTEEEEEEEEEEEDEKNQVGIEE 187

Query: 181 ----RNAFSKWVMVLEENEA-----------GNDDGSVE----PPENALVLMRCRSAPAK 230
               R AFSKW MVL+EN +             DD S+E    PP NAL+LMRCRSAPA+
Sbjct: 188 NESSRTAFSKWFMVLQENGSNELKRDSKSLCNEDDESIEAIMAPPINALLLMRCRSAPAR 247

[Close]

BLAST of Sed0003612 vs. ExPASy TrEMBL
Match: A0A6J1IQQ3 (uncharacterized protein LOC111477333 OS=Cucurbita maxima OX=3661 GN=LOC111477333 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 6.0e-73
Identity = 171/272 (62.87%), Postives = 188/272 (69.12%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHR-HRRRKSAESPVV 60
           MKLI R++KAIPS DLL+CFPSR H  LMPNPLCSP R  D  +  R HRRRKSAESPVV
Sbjct: 1   MKLI-RDIKAIPSPDLLVCFPSRSHFALMPNPLCSPVRASDSNKLRRYHRRRKSAESPVV 60

Query: 61  WAKGKTM-GAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGS----------------SWV 120
           WAK KT+ G+EVSEPSSPKVTCAGQ+K+R  S K WESV                  +WV
Sbjct: 61  WAKAKTIGGSEVSEPSSPKVTCAGQIKMRRKSRKSWESVMEEIERIHNRRELRRRRFNWV 120

Query: 121 ESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEE--------ERNAFSKWV 180
           ESLGFKKDIMQFLTCLR  RFDF CF AFP  E TSED+EEEE         R AFSKW 
Sbjct: 121 ESLGFKKDIMQFLTCLRSIRFDFGCFGAFPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWF 180

Query: 181 MVLEEN---EAGN-----DDGSV----EPPENALVLMRCRSAPAKSWV-----EFEEEEE 230
           MVL+ +     GN     DD S+     PP NAL+LMRCRSAPAKSWV     E EE+ E
Sbjct: 181 MVLQGSGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEACSEEEEDTE 240

[Close]

BLAST of Sed0003612 vs. ExPASy TrEMBL
Match: A0A6J1FBW7 (uncharacterized protein LOC111442647 OS=Cucurbita moschata OX=3662 GN=LOC111442647 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.3e-72
Identity = 168/267 (62.92%), Postives = 183/267 (68.54%), Query Frame = 0


Query: 6   REMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHR-HRRRKSAESPVVWAKGK 65
           R+ KA PS DLL+CFPSR H  LMPNPLCSPAR  D  +  R HRRRKSAESPVVWAK K
Sbjct: 5   RDTKANPSPDLLVCFPSRSHFALMPNPLCSPARASDSNKLRRYHRRRKSAESPVVWAKAK 64

Query: 66  TM-GAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGS----------------SWVESLGF 125
           TM G+EVSEPSSPKVTCAGQ+K+RP S K WESV                  +WVESLGF
Sbjct: 65  TMGGSEVSEPSSPKVTCAGQIKMRPKSRKSWESVMEEIERIHNRRELRRRRFNWVESLGF 124

Query: 126 KKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEE--------ERNAFSKWVMVLEE 185
           KKDIMQFLTCLR  RFDF CF AFP  E TSED+EEEE         R AFSKW MVL+ 
Sbjct: 125 KKDIMQFLTCLRSLRFDFGCFGAFPEAEFTSEDEEEEEVGVEGSDGSRTAFSKWFMVLQG 184

Query: 186 N---EAGN-----DDGSV----EPPENALVLMRCRSAPAKSWV-----EFEEEEEVKVKK 230
           +     GN     DD S+     PP NAL+LMRCRSAPAKSWV     E  EE EVKVKK
Sbjct: 185 SGVRRDGNGLCTVDDASIGPPMAPPRNALLLMRCRSAPAKSWVEEGCSEEGEETEVKVKK 244

[Close]

BLAST of Sed0003612 vs. ExPASy TrEMBL
Match: A0A0A0L1Z4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377750 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 3.0e-72
Identity = 166/310 (53.55%), Postives = 192/310 (61.94%), Query Frame = 0


Query: 1   MKLISREMKAIPSADLLLCFPSRPHLPLMPNPLCSPARGPDRGR-----HHRHRRRKSAE 60
           MKL   + K IPS+DLL+CFPSR HL LMPNPLCSPARG D  +        HRRRKSAE
Sbjct: 1   MKLNREKSKGIPSSDLLVCFPSRSHLALMPNPLCSPARGSDSSKFRLDYRRYHRRRKSAE 60

Query: 61  SPVVWAKGKTMGAEVSEPSSPKVTCAGQVKIRPTSSKRWESVGS---------------- 120
           SPVVWAK KTMG+E+SEPSSPKVTCAGQ+KIRP +SK W+SV                  
Sbjct: 61  SPVVWAKAKTMGSEISEPSSPKVTCAGQIKIRPKNSKSWQSVMEEIERIHNRRKLRRRRF 120

Query: 121 SWVESLGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEE------------- 180
           +W+ES GFKKDIMQFLTCLR  RFDFRCFRAFP T+ T+E++EEEEE             
Sbjct: 121 NWIESFGFKKDIMQFLTCLRTMRFDFRCFRAFPETDFTTEEEEEEEEEEEEEEEKNQVGI 180

Query: 181 ------RNAFSKWVMVLEENEAG-----------NDDGSVE----PPENALVLMRCRSAP 230
                 R AFSKW MVL+EN +             DD S+E    PP NAL+LMRC+SAP
Sbjct: 181 EENESSRTAFSKWFMVLQENGSNELKRDSNSRCYEDDESIEATMAPPRNALLLMRCKSAP 240

[Close]

BLAST of Sed0003612 vs. TAIR 10
Match: AT1G78110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22230.1); Has 5452 Blast hits to 3541 proteins in 289 species: Archae - 4; Bacteria - 165; Metazoa - 1756; Fungi - 532; Plants - 205; Viruses - 141; Other Eukaryotes - 2649 (source: NCBI BLink). )

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-44
Identity = 129/325 (39.69%), Postives = 161/325 (49.54%), Query Frame = 0


Query: 13  SADLLLCFPSRPHLPLMPNPLCSPARGPDRGRHHR-HRRRKSAE----------SPVVWA 72
           SADLL+CFPSR HL L P P+CSP+R  D   + R H RR+ ++          SPV+WA
Sbjct: 17  SADLLVCFPSRTHLALTPKPICSPSRPSDSSTNRRPHHRRQLSKLSGGGGGGHGSPVLWA 76

Query: 73  K---GKTMGA-EVSEPSSPKVTCAGQVKIRPTS----SKRWESV---------GSSWVES 132
           K    K MG  E++EP+SPKVTCAGQ+K+RP+      K W+SV           S  + 
Sbjct: 77  KQASSKNMGGDEIAEPTSPKVTCAGQIKVRPSKCGGRGKNWQSVMEEIERIHDNRSQSKF 136

Query: 133 LGFKKDIMQFLTCLRKFRFDFRCFRAFPGTELTSEDDEEEEE-----------------R 192
            G KKD+M FLTCLR  +FDFRCF  F   ++TS+DDEEE++                 +
Sbjct: 137 FGLKKDVMGFLTCLRNIKFDFRCFGDFRHADVTSDDDEEEDDDDDEEEEVVEGEEEENSK 196

Query: 193 NAFSKWVMVLEENEAGNDDGS------------------VEPPENALVLMRCRSAPAKSW 229
             FSKW MVL+E +   DD                      PP NAL+LMRCRSAPAKSW
Sbjct: 197 TVFSKWFMVLQEEQNNKDDDKNNNKCDEKRDLEDTETEPAVPPPNALLLMRCRSAPAKSW 256

[Close]

BLAST of Sed0003612 vs. TAIR 10
Match: AT1G22230.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78110.1); Has 2358 Blast hits to 1759 proteins in 159 species: Archae - 2; Bacteria - 36; Metazoa - 1046; Fungi - 203; Plants - 157; Viruses - 72; Other Eukaryotes - 842 (source: NCBI BLink). )

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-34
Identity = 114/303 (37.62%), Postives = 146/303 (48.18%), Query Frame = 0


Query: 13  SADLLLCFPSRPHLPLMPNPLCSPARGPDRGR---HHRHRRRKSAESPVVWAKGKTMGAE 72
           SADL++CFPSR HL L    + SP+   +R +   HHR    K + S     + +  G E
Sbjct: 13  SADLMVCFPSRAHLSLPSKSISSPSSSFNRRQNAPHHRRSISKLSSSGGGVRQNRGGGRE 72

Query: 73  -VSEPSSPKVTCAGQVKIRPT----SSKRWESV---------GSSWVESLGFKKDIMQFL 132
            V EP+SPKVTCAGQ+K+R +      K W+S+           S  +  G K+D+M FL
Sbjct: 73  VVEEPTSPKVTCAGQIKVRSSKRDGGGKNWQSLMAEIEKIHRSKSESKFFGIKRDVMGFL 132

Query: 133 TCLRKFRFDFRCFRAFPGTELTSEDDEEEEER--------------NAFSKWVMVLEENE 192
           TCLR   FDFRCF AFP  ++ S+D+EE+EE                 FSKW+MVL E +
Sbjct: 133 TCLRD--FDFRCFGAFPPVDIISDDEEEDEEEEEEDEEEDEDESSGTVFSKWLMVLHEKQ 192

Query: 193 AGND--DG---------SVEPPENALVLMRCRSAPAKSWVE----------------FEE 229
              +  DG         +  PP NAL+LMRCRSAP K+W E                 EE
Sbjct: 193 NNEECVDGKENVFSDVETAVPPPNALLLMRCRSAPVKNWSEEKKEETEEGDNRVKQSGEE 252

[Close]

BLAST of Sed0003612 vs. TAIR 10
Match: AT5G03110.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: protamine P1 family protein (TAIR:AT2G37100.1); Has 81 Blast hits to 73 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 5.7e-07
Identity = 49/175 (28.00%), Postives = 74/175 (42.29%), Query Frame = 0


Query: 33  LCSPARGPDRGRHHRHRRRKSAESPVVWAKGKTMGAEVSEPSSPKVTCAGQV-------K 92
           L S + G    R     R +S  SP+   + K+  A   EPSSPKVTC GQV       K
Sbjct: 25  LRSKSNGGSTSRSRSRSRGRSRASPLFVRRNKSAAAVAQEPSSPKVTCMGQVRVNRSKPK 84

Query: 93  IRPTSSKRWESVGSSWVESLGFKKDI---MQFLTCLRKFRFDFRCFRAFPGTELTSEDDE 152
           I+P S          W+ +  F       ++ +T   K+R    C  +     L  +D  
Sbjct: 85  IKPESRDNPTRRRCEWLRNASFYNKFAGKIKTMTFWPKWRL---CSFSCACRNLKEKDSP 144

Query: 153 EEEERNAFSKWVMVLEENEAGNDDGSV---------EPPENALVLMRCRSAPAKS 189
             +  +  ++ V  ++E   G ++  +          PP NAL+L R RSAP +S
Sbjct: 145 RSQLDHPTTESVREIKEEIEGEENFEIPKLFVSPATTPPINALLLTRSRSAPYRS 196

[Close]

BLAST of Sed0003612 vs. TAIR 10
Match: AT2G37100.1 (protamine P1 family protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.6e-04
Identity = 56/190 (29.47%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 47  RHRRRKSAESPVVW-AKGKTMGAEVSEPSSPKVTCAGQVKIRPT--------------SS 106
           R R R  +  P+ +  K  +  AE  EP+SPKVTC GQV+I  +              + 
Sbjct: 30  RSRSRSRSRRPIFFRRKNASAAAETQEPTSPKVTCMGQVRINRSKKPKPETARVSGGATE 89

Query: 107 KRWESVGSSWVES-------LGFKKDIMQFLTCLRKFR-FDFRCF-----------RAFP 166
           +R +S    WV++        G  K    F    RK++ F    F           R+ P
Sbjct: 90  RRRQSRRCGWVKNAFPCHSFTGIIKPTC-FSPVWRKWKSFSHASFSKKSEKRSSSSRSEP 149

Query: 167 -GTELTSEDDEEEEERNAFSKWVMVLEENEAGNDDGSVEPPENALVLMRCRSAPAKSWVE 198
                T E +E EE R   ++     EE  +     +  PP NA +L RCRSAP +S   
Sbjct: 150 IFGRSTVEPEEPEETRKEENQ-----EEEASSCKSFTATPPRNAFLLTRCRSAPYRSPSS 209

The following BLAST results are available for this feature:

BLAST of Sed0003612 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898663.1	1.3e-74	54.09	transcription initiation factor IIE subunit alpha [Benincasa hispida]	[more]
XP_008444111.1	1.9e-73	56.62	PREDICTED: uncharacterized protein LOC103487551 [Cucumis melo] >KAA0064246.1 tra...	[more]
XP_023535965.1	1.2e-72	62.87	uncharacterized protein LOC111797241 isoform X3 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_023535963.1	1.2e-72	62.87	uncharacterized protein LOC111797241 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022977179.1	1.2e-72	62.87	uncharacterized protein LOC111477333 [Cucurbita maxima]	[more]

BLAST of Sed0003612 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D503	9.3e-74	56.62	Transcription initiation factor IIE subunit alpha-like OS=Cucumis melo var. maku...	[more]
A0A1S3B949	9.3e-74	56.62	uncharacterized protein LOC103487551 OS=Cucumis melo OX=3656 GN=LOC103487551 PE=...	[more]
A0A6J1IQQ3	6.0e-73	62.87	uncharacterized protein LOC111477333 OS=Cucurbita maxima OX=3661 GN=LOC111477333...	[more]
A0A6J1FBW7	2.3e-72	62.92	uncharacterized protein LOC111442647 OS=Cucurbita moschata OX=3662 GN=LOC1114426...	[more]
A0A0A0L1Z4	3.0e-72	53.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377750 PE=4 SV=1	[more]

BLAST of Sed0003612 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78110.1	2.0e-44	39.69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G22230.1	2.4e-34	37.62	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT5G03110.1	5.7e-07	28.00	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G37100.1	2.6e-04	29.47	protamine P1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..58
None	No IPR available	PANTHER	PTHR33448	CHLOROPLAST PROTEIN HCF243-RELATED	coord: 5..203
None	No IPR available	PANTHER	PTHR33448:SF3	OS09G0370000 PROTEIN	coord: 5..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003612.1	Sed0003612.1	mRNA