Sed0003541 (gene) Chayote v1

Overview


Name	Sed0003541
Type	gene
Organism	Sechium edule (Chayote v1)
Description	arabinogalactan peptide 23-like
Location	LG09: 37853381 .. 37853572 (+)
RNA-Seq Expression	Sed0003541
Synteny	Sed0003541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAACTTTGCCTGCGCCGCCCTCTTCGCTGCCGCTACCGTCACCGCAGTCGTGGCCTCCGATGAGTCCGTCTCCCCGGCTGCAGCACCGGGGCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGTTTGTTTCCTTCGTCGCCTACCTCTTGAACTGA

mRNA sequence

ATGGAAATGAAGAACTTTGCCTGCGCCGCCCTCTTCGCTGCCGCTACCGTCACCGCAGTCGTGGCCTCCGATGAGTCCGTCTCCCCGGCTGCAGCACCGGGGCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGTTTGTTTCCTTCGTCGCCTACCTCTTGAACTGA

Coding sequence (CDS)

ATGGAAATGAAGAACTTTGCCTGCGCCGCCCTCTTCGCTGCCGCTACCGTCACCGCAGTCGTGGCCTCCGATGAGTCCGTCTCCCCGGCTGCAGCACCGGGGCCGAGCAGCGCTGCCTCCGCTGCTCTTCCCGCCCTTGGATCGCTCGTCGGCGCCTCGTTTGTTTCCTTCGTCGCCTACCTCTTGAACTGA

Protein sequence

MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAYLLN

Homology

[Close]

BLAST of Sed0003541 vs. NCBI nr
Match: XP_023528634.1 (arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 4.6e-17
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMKN ACAALFAAA VTAVVASDES+SPAAAPGPSSAASAALPALGSL+GAS VSFVAY
Sbjct: 1  MEMKNIACAALFAAAAVTAVVASDESLSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0003541 vs. NCBI nr
Match: XP_023004714.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0003541 vs. NCBI nr
Match: KAG7018419.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMKN ACA LFAAA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GAS VSFVAY
Sbjct: 1  MEMKNIACAVLFAAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0003541 vs. NCBI nr
Match: KAG7025661.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 6.6e-16
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVA+
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0003541 vs. NCBI nr
Match: XP_022980143.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 1.1e-15
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMKN AC ALF AA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GAS VSFVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0003541 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  AC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGAS VS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 LLN 64
           L+
Sbjct: 61 YLH 61

[Close]

BLAST of Sed0003541 vs. ExPASy TrEMBL
Match: A0A6J1KX42 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0003541 vs. ExPASy TrEMBL
Match: A0A6J1IYE9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-16
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMKN AC ALF AA VTAVVASDES SPAAAPGPSSAASAALPALGSL+GAS VSFVAY
Sbjct: 1  MEMKNIACTALFTAAAVTAVVASDESHSPAAAPGPSSAASAALPALGSLIGASLVSFVAY 60

Query: 61 LLN 64
          +LN
Sbjct: 61 VLN 63

[Close]

BLAST of Sed0003541 vs. ExPASy TrEMBL
Match: A0A6J1H8I1 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.1e-16
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  ACAALFAAAT+TAVVASDES+SPAAAPGPSSAASAALPALGSLVGAS VSFVA+
Sbjct: 1  MEMKKIACAALFAAATLTAVVASDESLSPAAAPGPSSAASAALPALGSLVGASLVSFVAF 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0003541 vs. ExPASy TrEMBL
Match: A0A6J1F3F5 (arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  ACAALFAAATVTAVVASDES+SPAAAPGPSSAASA LPALGSLVGAS VS VAY
Sbjct: 1  MEMKKIACAALFAAATVTAVVASDESLSPAAAPGPSSAASATLPALGSLVGASLVSLVAY 60

Query: 61 LLN 64
            N
Sbjct: 61 YFN 63

[Close]

BLAST of Sed0003541 vs. ExPASy TrEMBL
Match: A0A1S3CDX5 (arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-10
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFV-A 60
          MEMK  ACAALFAAA V+A VA+DES+SPAAAPGPSSAASAALP L    GAS VSFV A
Sbjct: 1  MEMKKIACAALFAAAAVSAAVAADESISPAAAPGPSSAASAALPVL----GASVVSFVAA 60

Query: 61 YLLN 64
          Y LN
Sbjct: 61 YFLN 60

[Close]

BLAST of Sed0003541 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 66.6 bits (161), Expect = 8.0e-12
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGPSSAASAALPALGSLVGASFVSFVAY 60
          MEMK  AC  LFAAA++TAV+A++E  +P  APGP+SAASAALPALGSLVGAS VS  +Y
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAP--APGPASAASAALPALGSLVGASLVSLFSY 60

Query: 61 LLN 64
           L+
Sbjct: 61 YLH 61

[Close]

BLAST of Sed0003541 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-08
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 1  MEMKNFACAALFAAATVTAVVASDESVSPAAAPGP-SSAASAALPALGSLVGASFVSFVA 60
          MEMK  AC  +FAAA++TAV+A++     A APGP +S AS A+PALGSLVGAS VS  A
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG---APAPGPAASGASVAVPALGSLVGASLVSLFA 60

Query: 61 YLLN 64
          Y LN
Sbjct: 61 YYLN 61

The following BLAST results are available for this feature:

BLAST of Sed0003541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528634.1	4.6e-17	90.48	arabinogalactan peptide 23 [Cucurbita pepo subsp. pepo]	[more]
XP_023004714.1	2.3e-16	90.48	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7018419.1	3.9e-16	88.89	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7025661.1	6.6e-16	88.89	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022980143.1	1.1e-15	87.30	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]

BLAST of Sed0003541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	1.1e-10	66.67	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Sed0003541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KX42	1.1e-16	90.48	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111497929 PE=4...	[more]
A0A6J1IYE9	5.4e-16	87.30	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111479619 PE=4...	[more]
A0A6J1H8I1	7.1e-16	87.30	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111461032 PE...	[more]
A0A6J1F3F5	1.6e-15	87.30	arabinogalactan peptide 23-like OS=Cucurbita moschata OX=3662 GN=LOC111439670 PE...	[more]
A0A1S3CDX5	5.8e-10	76.56	arabinogalactan peptide 23-like OS=Cucumis melo OX=3656 GN=LOC103499912 PE=4 SV=...	[more]

BLAST of Sed0003541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	8.0e-12	66.67	arabinogalactan protein 23	[more]
AT2G41905.1	1.4e-08	60.94	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003541.1	Sed0003541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane