Sed0003497 (gene) Chayote v1

Overview


Name	Sed0003497
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 4112178 .. 4112465 (-)
RNA-Seq Expression	Sed0003497
Synteny	Sed0003497

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGATTTTGATATTGGTGATCCAGTTGCGATTGGCACGCAAGGCAGTATGGGATCCTTGGTGATGAAGGAAATTGAGTACTTCACAAGGCTTGATCTTGAACGCCATGGTTCAACAACAAGTAATAATTCCAAGACAGGTTTTTGGGTTTTGTTCTTCACTAATTGGAGCTGCAAGAAGAGATCAAGAACCAACAATATTTGCTCTGTTGCTGTTGAATTCTCAAAAAGTAATCGCTTCAATTACAGGATTCTCAAACAAGATGTCAATCACTTTCGCATTTGA

mRNA sequence

ATGGGCGATTTTGATATTGGTGATCCAGTTGCGATTGGCACGCAAGGCAGTATGGGATCCTTGGTGATGAAGGAAATTGAGTACTTCACAAGGCTTGATCTTGAACGCCATGGTTCAACAACAAGTAATAATTCCAAGACAGGTTTTTGGGTTTTGTTCTTCACTAATTGGAGCTGCAAGAAGAGATCAAGAACCAACAATATTTGCTCTGTTGCTGTTGAATTCTCAAAAAGTAATCGCTTCAATTACAGGATTCTCAAACAAGATGTCAATCACTTTCGCATTTGA

Coding sequence (CDS)

ATGGGCGATTTTGATATTGGTGATCCAGTTGCGATTGGCACGCAAGGCAGTATGGGATCCTTGGTGATGAAGGAAATTGAGTACTTCACAAGGCTTGATCTTGAACGCCATGGTTCAACAACAAGTAATAATTCCAAGACAGGTTTTTGGGTTTTGTTCTTCACTAATTGGAGCTGCAAGAAGAGATCAAGAACCAACAATATTTGCTCTGTTGCTGTTGAATTCTCAAAAAGTAATCGCTTCAATTACAGGATTCTCAAACAAGATGTCAATCACTTTCGCATTTGA

Protein sequence

MGDFDIGDPVAIGTQGSMGSLVMKEIEYFTRLDLERHGSTTSNNSKTGFWVLFFTNWSCKKRSRTNNICSVAVEFSKSNRFNYRILKQDVNHFRI

Homology

[Close]

BLAST of Sed0003497 vs. NCBI nr
Match: KAG6594656.1 (hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-18
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFTNWSCK 68
           P+AIGT+G+MGSLVMKEIEYFT+L+LERHG        ++  ++SKT FW+L   +W  K
Sbjct: 20  PLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSL-SWKWK 79

Query: 69  KRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           KR   N    NICS AVE SKSNRFN      YRILK DV HF I
Sbjct: 80  KRRTNNGILPNICS-AVELSKSNRFNGIPGFGYRILKNDVTHFPI 122

[Close]

BLAST of Sed0003497 vs. NCBI nr
Match: XP_022926407.1 (uncharacterized protein LOC111433571 [Cucurbita moschata] >KAG7026623.1 hypothetical protein SDJN02_10625, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-18
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFTNWSCK 68
           P+AIGT+G+MGSLVMKEIEYFT+L+LERHG        ++  ++SKT FW+L   +W  K
Sbjct: 20  PLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSL-SWKWK 79

Query: 69  KRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           KR   N    NICS AVE SKSNRFN      YRILK DV HF I
Sbjct: 80  KRRTNNGILPNICS-AVELSKSNRFNGIPGFGYRILKDDVTHFPI 122

[Close]

BLAST of Sed0003497 vs. NCBI nr
Match: XP_023518155.1 (uncharacterized protein LOC111781699 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.5 bits (249), Expect = 8.1e-18
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFTNWSCK 68
           P+AIGT+G+MGSLVMKEIEYFT+L+LERHG        ++  ++SKT FW+L   +W  K
Sbjct: 20  PLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSL-SWKWK 79

Query: 69  KRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           KR   N    NICS AVE SKSNRFN      YRILK DV HF I
Sbjct: 80  KRRTNNGILPNICS-AVELSKSNRFNGIPGFGYRILKDDVTHFPI 122

[Close]

BLAST of Sed0003497 vs. NCBI nr
Match: XP_023003961.1 (uncharacterized protein LOC111497407 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFTNWSCK 68
           P+AIGT+G+MGSLVMKEIEYFT+L+LERHG        ++  ++S+T FW+L   +W  K
Sbjct: 20  PLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSRTSFWLLSL-SWKWK 79

Query: 69  KRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           KR   N    NICS AVE SKSNRFN      YRILK D+ HF I
Sbjct: 80  KRRTNNGILPNICS-AVELSKSNRFNGIPGFGYRILKDDITHFPI 122

[Close]

BLAST of Sed0003497 vs. NCBI nr
Match: XP_022142335.1 (uncharacterized protein LOC111012477 [Momordica charantia])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFT-NWSC 68
           P+AIGT+G++GSLVMKEIEYFT+L+LERHG        ++   +SK  FW+L  T  W  
Sbjct: 20  PLAIGTRGTVGSLVMKEIEYFTKLELERHGGSQRITAEASRRGDSKPSFWLLSSTWKWKK 79

Query: 69  KKRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           ++   TN    NICS AVE SKSNRFN      YRILK+DVN+F I
Sbjct: 80  RRSGSTNGILPNICS-AVELSKSNRFNGIPGFGYRILKEDVNYFTI 124

[Close]

BLAST of Sed0003497 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 60/105 (57.14%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFTNWSCK 68
           P+AIGT+G+MGSLVMKEIEYFT+L+LERHG        ++  ++SKT FW+L   +W  K
Sbjct: 20  PLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSKTSFWLLSL-SWKWK 79

Query: 69  KRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           KR   N    NICS AVE SKSNRFN      YRILK DV HF I
Sbjct: 80  KRRTNNGILPNICS-AVELSKSNRFNGIPGFGYRILKDDVTHFPI 122

[Close]

BLAST of Sed0003497 vs. ExPASy TrEMBL
Match: A0A6J1KQQ8 (uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFTNWSCK 68
           P+AIGT+G+MGSLVMKEIEYFT+L+LERHG        ++  ++S+T FW+L   +W  K
Sbjct: 20  PLAIGTRGTMGSLVMKEIEYFTKLELERHGGSQRLSGDASRRSDSRTSFWLLSL-SWKWK 79

Query: 69  KRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           KR   N    NICS AVE SKSNRFN      YRILK D+ HF I
Sbjct: 80  KRRTNNGILPNICS-AVELSKSNRFNGIPGFGYRILKDDITHFPI 122

[Close]

BLAST of Sed0003497 vs. ExPASy TrEMBL
Match: A0A6J1CKN5 (uncharacterized protein LOC111012477 OS=Momordica charantia OX=3673 GN=LOC111012477 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHG--------STTSNNSKTGFWVLFFT-NWSC 68
           P+AIGT+G++GSLVMKEIEYFT+L+LERHG        ++   +SK  FW+L  T  W  
Sbjct: 20  PLAIGTRGTVGSLVMKEIEYFTKLELERHGGSQRITAEASRRGDSKPSFWLLSSTWKWKK 79

Query: 69  KKRSRTN----NICSVAVEFSKSNRFN------YRILKQDVNHFRI 96
           ++   TN    NICS AVE SKSNRFN      YRILK+DVN+F I
Sbjct: 80  RRSGSTNGILPNICS-AVELSKSNRFNGIPGFGYRILKEDVNYFTI 124

[Close]

BLAST of Sed0003497 vs. ExPASy TrEMBL
Match: A0A5D3CRM5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006580 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 55/98 (56.12%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHGSTTS--------NNSKTGFWVLFFTNWSCK 68
           P+AIGT+G++GSLVMKEIEYFT L+LERHGS+ +        ++SK  FW+L  T W  K
Sbjct: 21  PLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNALRRSDSKGSFWLLSLT-WKWK 80

Query: 69  KRSRTNNI---CSVAVEFSKSNRFN------YRILKQD 90
           KR   N I    S AVEFSKSNRFN      YRILK D
Sbjct: 81  KRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDD 117

[Close]

BLAST of Sed0003497 vs. ExPASy TrEMBL
Match: A0A1S3B3D8 (uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 55/98 (56.12%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDLERHGSTTS--------NNSKTGFWVLFFTNWSCK 68
           P+AIGT+G++GSLVMKEIEYFT L+LERHGS+ +        ++SK  FW+L  T W  K
Sbjct: 21  PLAIGTRGTVGSLVMKEIEYFTNLELERHGSSHTIRGNALRRSDSKGSFWLLSLT-WKWK 80

Query: 69  KRSRTNNI---CSVAVEFSKSNRFN------YRILKQD 90
           KR   N I    S AVEFSKSNRFN      YRILK D
Sbjct: 81  KRKNNNGILPNISSAVEFSKSNRFNGIPGFGYRILKDD 117

[Close]

BLAST of Sed0003497 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-08
Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 0


Query: 9   PVAIGTQGSMGSLVMKEIEYFTRLDL------ERHGSTTSN----------NSKTGFWVL 68
           P+AIGT+G++GSLV KEI+YF            R G++  N          +S+ G W  
Sbjct: 4   PIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSW-F 63

Query: 69  FFTNWSCKKRSRTN-------NICSVAVEFSKSNR---FNYRILKQD 90
             T W  KKR           ++CS AVE S  NR   FNYRILK D
Sbjct: 64  SKTKWRKKKRQTRGGGGKFFPSMCS-AVEVSGENRVPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Sed0003497 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594656.1	8.1e-18	57.14	hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022926407.1	8.1e-18	57.14	uncharacterized protein LOC111433571 [Cucurbita moschata] >KAG7026623.1 hypothet...	[more]
XP_023518155.1	8.1e-18	57.14	uncharacterized protein LOC111781699 [Cucurbita pepo subsp. pepo]	[more]
XP_023003961.1	2.4e-17	55.24	uncharacterized protein LOC111497407 [Cucurbita maxima]	[more]
XP_022142335.1	2.6e-16	53.77	uncharacterized protein LOC111012477 [Momordica charantia]	[more]

BLAST of Sed0003497 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003497 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEE9	3.9e-18	57.14	uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC1114335...	[more]
A0A6J1KQQ8	1.1e-17	55.24	uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407...	[more]
A0A6J1CKN5	1.3e-16	53.77	uncharacterized protein LOC111012477 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A5D3CRM5	1.1e-15	56.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B3D8	1.1e-15	56.12	uncharacterized protein LOC103485325 OS=Cucumis melo OX=3656 GN=LOC103485325 PE=...	[more]

BLAST of Sed0003497 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	6.2e-08	39.25	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 9..93
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 9..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003497.1	Sed0003497.1	mRNA