Sed0003492 (gene) Chayote v1

Overview


Name	Sed0003492
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nucleolar protein 10
Location	LG01: 71142664 .. 71145697 (+)
RNA-Seq Expression	Sed0003492
Synteny	Sed0003492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCGTCAGAGTTCTTCCGTCTGGTATTGATTTCCAAAACCCTGGAAATCATCACTGCACTTTGGATTTTTTGTATATTTGATTTGCATTCGAGACTGCATTTTTTTTCTTCCAATTATCCATGGATGTTATGCAAGTCTTCCATGTGTAGGGTTTTTTGCATTATGTTCTGTGTAACGACTTGATTTTTCTCCGAAATTGTTCAGATTGAGAGTTCAGCAACGATGTATCTTCAGTTTTACATCAACGACAATGGCGACAAAGTCTACACCACAAAGGTTTCTCTTCCTTGTTTACCTTTTCGCTTTTCGTTTAAAAGTTAATCGATGCGTACCTCTATTCTTTGTTGGCCTGATTTTGGAGATGGGAACATTGAATTGATTCTATTTATGTAGGCATTCTTTAAACGTTTACAGCATTACCTCTCTTGAGATTGAAGTAGGCTATAACACCATTTAGTGCTAGTGTTTTGTGCACTTTACATTTTTCATTGTATATTGTGGACCCGTTAAATGATTTTATTTTATCTGTAGTGGCATATTAGCTGCTGCTTTGTATTTCTTGACTTACCAGGAAGTTTGTCGTGATGTTTTGAGCTTTTTTTCTAAGAACTTCTAATCCCTCCATCTCTACTTTACCGTATCATGGTGGTAGATTAGAATTTCCTTCTCCCTTCCCTGACCTCGAAGGAGGAGAAGGTCTAGACTTTAGATGCCATACTTTCTCCACTATTTGAATTTTGATTGGTAAGTTGAGCAAGGGGCCTTGTTTGGGCTGGTAGGGGTGTTGATGGTGTTAGCCATCTTTTTAATTTGTAATGTGTTTCTATTTAATAAGAAGCTGTGGTGGGAATGGACCATGGTGTGTGTCAGAGGGCTCCAAATTCTTCAGGGCAGACAATTCGTTGTGGCATGGCAATATCACAACAGATATGGTATCTAGATAGGGGAAGCAGAGGGGTTTACCTAGGAAGGAAAAACGGTAGAGAAAATGGTTTACCTAGGAAGGAAAGCTAATACATATACTTTCCACTTGCAAATTCCAACCAGATAACATATTTTGAAATTTTTGGGCGTGGTTACCAGTTACCACCTTGGGTATAGTGGAGCGAAGCTCCAATTTCTTGGTTTAAAAAAATGTATTTTGAAATTTTGGGGTTGGGGGAGCCGAGGAGGGGGTGATGGAAGCTAGGTTGTATTCAATGAGGTTGAAACCTTCAAATTGAAGGATTTTTCAGAGGTTGGAAGATCATGGTATGGGCAACCCACTCTAGGGCCAAGATTCAATGTGTGACATGTATATGGCAGCATGTATTTTTGGGATTTGAGGATAGTGGTGGTTGACTGGTTTCTATGGCGGTGCTATTTGGTTACCCTAATAAATCTTGAGATCAGTGCCTTTCTTTTTTACTATGGTTTTCAAGATCTTGTGGAGTCTCAAAATTCCCACAGCAATTCTAAAGTTTTGGCTGGGCCTTTGCTCTTTTTGAGGATTGAACACTTCTAGTGCTATCCTTATCTCAACTTTTTTTTTTCTTCTCTTTACTAGTGCATTCTGAGGAACACAATGGAAGATAGTATGTGTTGTTTCCTGTAGGCTGTGTAGTGTGAGGCTGTGGATGACTTTTTGAACACGTTTAGCCTCTAATGACACTCTCCAAATCCGTTCCTGAAGTTTGGATAAACTTTATGCACGCCTCATTTATCTAAAAATTCTTTTGGTCAATACAGTGATGGAGATCTAATGGAAGTTGGGATTGGAGGTGTCAAAGGCCCTTTGAAATTTATTTGTCCTTGGAATTTTTGAGACATGGCAAGGCCTGTATTATTTGCACTGATTTTAATTTTACCAATTTATTTGTTTGAATACACATATAAGATACCTATTTAAGAGGTCTTGTTATAAATGAATAATTTGTTGTCCATATATGTAACAAGAAAATGTCTGATGCGTTTCCACTTTGTTAAGATTACTACCAAGGCTGATAAAGTCATAAAACTCTAATATTGTGACTATAAAGGTATTAGCTAATGCAGTGCTGTAAGAATTAGTTTCTAGTTAGATTTCATGCCTCCCTCTAGGCTTCAGTCTCTAAGGCATTTTGTACCCTATTCATCTTATTTTACTTGACTGGAACTTCTTTTAGTTTTAGTTCAACTCTTTGGTTGAATTACGGACTACCAGTTACCAATTGGTTTTGAAATGGATGTCCACACTATCTAATATGGAATTAGAACTCGTTTTATTATTAGGTGGTAATCGAGTTCAACACGAAAGTTACGGGTTTGATCCTGAAAAAATCTTATACTCTTTATTTAGTGTTTGTGGTCCCGAACTTGTACTAAAAATTACGGACTGCCAGTTTTGAGGCAGAGAACTTATTGTTCAGGGTGCAATGGTTCTGGGTTTTATTCAGCATCAACTAAATTTAATGGGTTTATGCTGAGTTCTTACAGTTGGTAGAACTTTTTTTTTTCCATCTTTGGTAGAATTGTGCATTTAAAATGCGAACCATTTTGCCAATAAAATACAAATGAATTAATCCCTGCCCAACTACATTGATTAACCATTGCTAAATTTTCCTGCACTGTTTGTACTTTTCTTTTATGCTGATACGTAATTCATGCTAAATTATTTAGTTTGCATTTTTCTTTCTATGTACAGAAAGAATCACCTCTTGGTTTGGTCACACAATCTGCTCATCCAGGTAAAATTTTTTGCATTATCAGGCTAGTGTTGTGCCATCTCATTTCTTCATCTCGCACACTTCATAGCGATATCAATGCTTTTGATAGGGAGAAAGGGCATGCTACAATATCTCTGTGTTGTGTTTCTGGTTTAGTTCAGATATTGTCTGCTGGGCTTCCCCTTAATCGAGATCATGATTTTAGCAGTTTTGAGCCTGATTAACCTGTTGTAAATTTTCTGACTGCAGCCCGTTTTTCCCCCGATGACAAATTCTCGAGACAGAGAGTGCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGAAGCCAGCTCCAAAGTACTGA

mRNA sequence

CAAGCGTCAGAGTTCTTCCGTCTGGTATTGATTTCCAAAACCCTGGAAATCATCACTGCACTTTGGATTTTTTGTATATTTGATTTGCATTCGAGACTGCATTTTTTTTCTTCCAATTATCCATGGATGTTATGCAAGTCTTCCATGTGTAGGGTTTTTTGCATTATGTTCTGTGTAACGACTTGATTTTTCTCCGAAATTGTTCAGATTGAGAGTTCAGCAACGATGTATCTTCAGTTTTACATCAACGACAATGGCGACAAAGTCTACACCACAAAGAAAGAATCACCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTTTCCCCCGATGACAAATTCTCGAGACAGAGAGTGCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGAAGCCAGCTCCAAAGTACTGA

Coding sequence (CDS)

ATGTATCTTCAGTTTTACATCAACGACAATGGCGACAAAGTCTACACCACAAAGAAAGAATCACCTCTTGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTTTCCCCCGATGACAAATTCTCGAGACAGAGAGTGCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGAAGCCAGCTCCAAAGTACTGA

Protein sequence

MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKPAPKY

Homology

[Close]

BLAST of Sed0003492 vs. NCBI nr
Match: XP_020250406.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Asparagus officinalis])

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYINDNGDKVYTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQKP
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]

BLAST of Sed0003492 vs. NCBI nr
Match: PIA30884.1 (hypothetical protein AQUCO_05300011v1 [Aquilegia coerulea])

HSP 1 Score: 131.0 bits (328), Expect = 3.8e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQKP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]

BLAST of Sed0003492 vs. NCBI nr
Match: XP_021987349.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Helianthus annuus] >KAF5784913.1 putative H/ACA ribonucleoprotein complex, subunit Nop10 [Helianthus annuus])

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 GPKY 64

[Close]

BLAST of Sed0003492 vs. NCBI nr
Match: KAG5514599.1 (hypothetical protein RHGRI_035862 [Rhododendron griersonianum])

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYIN+ GDKVYTTKKESPLGL TQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP
Sbjct: 1  MYLQFYINEKGDKVYTTKKESPLGLATQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]

BLAST of Sed0003492 vs. NCBI nr
Match: KAG6606368.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 8.4e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQ P
Sbjct: 26 MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 85

Query: 61 APKY 65
           PKY
Sbjct: 86 PPKY 89

[Close]

BLAST of Sed0003492 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 1.5e-23
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDK+S+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 APKY 65
            +Y
Sbjct: 61 PLQY 64

[Close]

BLAST of Sed0003492 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-20
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          M+LQFY+N+NG++VYT KK  P G  T SAHPARFSPDDKFSR RV +KKRFGLL TQ+P
Sbjct: 1  MFLQFYLNENGERVYTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQP 60

Query: 61 AP 63
           P
Sbjct: 61 RP 62

[Close]

BLAST of Sed0003492 vs. ExPASy Swiss-Prot
Match: Q9V5P6 (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYL + IN+NGD+VYT KK +  G  T SAHPARFSP+DK+SRQR+ +KKRFGLL TQKP
Sbjct: 1  MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60

Query: 61 APKY 65
           P Y
Sbjct: 61 EPIY 64

[Close]

BLAST of Sed0003492 vs. ExPASy Swiss-Prot
Match: Q9NPE3 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-17
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDK+SR R+ +KKRF +L TQ+P
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 AP 63
           P
Sbjct: 61 RP 62

[Close]

BLAST of Sed0003492 vs. ExPASy Swiss-Prot
Match: Q9CQS2 (H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-17
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          M+LQ+Y+N+ GD+VYT KK  P+G  T SAHPARFSPDDK+SR R+ +KKRF +L TQ+P
Sbjct: 1  MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 61 AP 63
           P
Sbjct: 61 RP 62

[Close]

BLAST of Sed0003492 vs. ExPASy TrEMBL
Match: A0A2G5CHY0 (Nucleolar protein 10 OS=Aquilegia coerulea OX=218851 GN=AQUCO_05300011v1 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-27
Identity = 61/64 (95.31%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYIN+NGDKVYTTKKESPLGL TQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQKP
Sbjct: 1  MYLQFYINENGDKVYTTKKESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQKP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]

BLAST of Sed0003492 vs. ExPASy TrEMBL
Match: A0A6J1KA21 (Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111491467 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQ P
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]

BLAST of Sed0003492 vs. ExPASy TrEMBL
Match: A0A2Z6MYL0 (Nucleolar protein 10 OS=Trifolium subterraneum OX=3900 GN=TSUD_110770 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDKFSRQR+LLKKRFGLLPTQ P
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRILLKKRFGLLPTQHP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]

BLAST of Sed0003492 vs. ExPASy TrEMBL
Match: A0A6J1EYV1 (Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111437463 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDK+SRQRVLLKKRFGLLPTQ P
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 60

Query: 61 APKY 65
           PKY
Sbjct: 61 PPKY 64

[Close]

BLAST of Sed0003492 vs. ExPASy TrEMBL
Match: A0A2K3MZS9 (Nucleolar protein 10 OS=Trifolium pratense OX=57577 GN=L195_g019506 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.1e-27
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQFYINDNGDKVYTTKKESP+GL TQSAHPARFSPDDKFSRQR+LLKKRFGLLPTQ P
Sbjct: 1  MYLQFYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKFSRQRILLKKRFGLLPTQHP 60

Query: 61 APKY 65
          APKY
Sbjct: 61 APKY 64

[Close]

BLAST of Sed0003492 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-24
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQ YIN+ G+KVYTTKKESPLGL T+SAHPARFSPDDK+S+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 APKY 65
            +Y
Sbjct: 61 PLQY 64

[Close]

BLAST of Sed0003492 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 102.8 bits (255), Expect = 1.0e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1  MYLQFYINDNGDKVYTTKKESPLGLVTQSAHPARFSPDDKFSRQRVLLKKRFGLLPTQKP 60
          MYLQ YIN+ G+KVYTT KESPLGL T+SAHPARFSPDDK+S+QRVLLKKRFGLLPTQ  
Sbjct: 1  MYLQCYINEKGEKVYTT-KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNA 60

Query: 61 APKY 65
            +Y
Sbjct: 61 PLQY 63

The following BLAST results are available for this feature:

BLAST of Sed0003492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020250406.1	1.3e-27	96.88	H/ACA ribonucleoprotein complex subunit 3-like protein [Asparagus officinalis]	[more]
PIA30884.1	3.8e-27	95.31	hypothetical protein AQUCO_05300011v1 [Aquilegia coerulea]	[more]
XP_021987349.1	4.9e-27	95.31	H/ACA ribonucleoprotein complex subunit 3-like protein [Helianthus annuus] >KAF5...	[more]
KAG5514599.1	8.4e-27	95.31	hypothetical protein RHGRI_035862 [Rhododendron griersonianum]	[more]
KAG6606368.1	8.4e-27	95.31	H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr...	[more]

BLAST of Sed0003492 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XX8	1.5e-23	79.69	H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O...	[more]
Q6DRH5	7.9e-20	70.97	H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S...	[more]
Q9V5P6	3.3e-18	67.19	H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=...	[more]
Q9NPE3	1.3e-17	62.90	H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ...	[more]
Q9CQS2	1.3e-17	62.90	H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus OX=10090 GN=Nop10 PE=3...	[more]

BLAST of Sed0003492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G5CHY0	1.8e-27	95.31	Nucleolar protein 10 OS=Aquilegia coerulea OX=218851 GN=AQUCO_05300011v1 PE=3 SV...	[more]
A0A6J1KA21	4.1e-27	95.31	Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111491467 PE=3 SV=1	[more]
A0A2Z6MYL0	4.1e-27	93.75	Nucleolar protein 10 OS=Trifolium subterraneum OX=3900 GN=TSUD_110770 PE=3 SV=1	[more]
A0A6J1EYV1	4.1e-27	95.31	Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111437463 PE=3 SV=1	[more]
A0A2K3MZS9	4.1e-27	93.75	Nucleolar protein 10 OS=Trifolium pratense OX=57577 GN=L195_g019506 PE=3 SV=1	[more]

BLAST of Sed0003492 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20490.1	1.1e-24	79.69	nucleolar RNA-binding Nop10p family protein	[more]
AT2G20490.2	1.0e-22	78.13	nucleolar RNA-binding Nop10p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.28.40	H/ACA ribonucleoprotein complex, subunit Nop10	coord: 10..54 e-value: 2.4E-13 score: 51.8
None	No IPR available	PANTHER	PTHR13305:SF5	NUCLEOLAR RNA-BINDING NOP10P-LIKE PROTEIN	coord: 1..64
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PFAM	PF04135	Nop10p	coord: 3..52 e-value: 3.4E-18 score: 65.4
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PANTHER	PTHR13305	RIBOSOME BIOGENESIS PROTEIN NOP10	coord: 1..64
IPR036756	H/ACA ribonucleoprotein complex, subunit Nop10 superfamily	SUPERFAMILY	144210	Nop10-like SnoRNP	coord: 3..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003492.1	Sed0003492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0090661	box H/ACA telomerase RNP complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0070034	telomerase RNA binding
molecular_function	GO:0030515	snoRNA binding