Sed0003475 (gene) Chayote v1

Overview
NameSed0003475
Typegene
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
LocationLG02: 51459673 .. 51461531 (-)
RNA-Seq ExpressionSed0003475
SyntenySed0003475
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACCTCCGCCTGTAGCATTCTCCATCGATTTCATTCCAAACAACCACCCATCAATGGAACTTCAACAAGAAAAGCTTCAATTGACCGAACACTAAGAGTTGTAAGCTCTCGCCGAAGGTGTTTGGCTGTTGTTGCCGCCATTGTTGATCAGGTTCCAGAGTTAGTGAGTGAAAGCGAAAAACCTAGGTTTCGGTGGGCGGAGGTGGGGTCGGATATTGCTGAATTTCAGAAGCAGGCCATTTCTCGGCTTCCTCCTAAGATGAGCAAAAGATGTAAGGCTCTGATGAAGCAGATTATCTGTTTTTCGCCTCGAAAGGGCGATTTAGCAGATTTGTTGGCGGCTTGGGTGAGGATTATGAAACCTAAAAGAGCTGATTGGCTTTTGGTTCTTAAGCATTTGAAGCTTTTGGACCATCCACTTTACATCCAGGTTTGTTTAATCTTATATAGTATTCTAAATGTTTTGTTTCATGGCTAGCCTAGTGGTTAAAAACTTAAAATCACTTTAAAGGTTATGGCTGAACTCTTGGACAGTCACCTATATATAAATTAGTTATCTATTGGTTATTCTAAATGTATAGCTTCATGTTCATCGAGGGTTAGTGGCGGAGTTGGTTATCTTGTTTGGTATTAATCTATTTCAACTTTACGGTCACGAGTTCGAGCCCGGAAATCAGAGCAGCTGCGCAGCTATGTAGGGTTTGTTGATCCCCATATCCTAATTTGTACTAAAAAAAAAATGTATAGTTCAATTCACCATCTATCCTCTTTAACCATTTAGTTTATTGTATTATGTTTTTGAAATTTTGGCTTATAAATACTACTATAATGGTTCCATCAATGTGTTTCGTTGCGTTGTTATCTAATTTTTTTAAAATGCTTTCAAAATCTAAGCCAGATTTTAAAACTACAAAAGAGTAGATTTTGAACGCTTTTTTTTGTTTTTTTTAATTTGGTTAAAAGTTCAAATGTTGCAAGGATGGTGAAAGATATCAATAGGCATCGTTTAAATTACTAAATTAAGAATGTGGTTATTTTATACTGCTTAAGCAAGTGGTAGTGTGTTGATTCTTTTAGGTGGCAGAGGCTGCTCTTCTAGAGAAAACATTTGAAGCCAGTACCCGAGACTACACGAAGATTATTTATCACTACGGGAAGCAAAACCAACTCGAGGATGCTGAAAAAGTTCTCTTTAGCATGAAAGAAAGGGGTTTTGCTTATGATCAAATAATATTAACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAATCTGGCTGAACAAACTTTCGAAGAGCTCAAAATGCTTGAGCAACCGTTGGATAAAAAATCGTACGGTGCGATGATTATGGCATATATCAGGGCTGGGATACCTGAGAAAGGAGAAAACATTCTCAAAGAAATGGATGCAAAAGAAATTTATGCAGGAAGTGAAGTTTACAAGGCCATGTTAAGAGCATACTCCATGGCTGGAAATGCTGAAGGAGCCCAAAGGCTGTTTGATGCAATTCAACTGGCGGCTATTCCTCCTGATGAAAAGTTGTGTGGTCTTCTGATTAATGCATATTTGATGGCGGGTGAAAGCCGAAAGGCACGAATTTCATTTGATAATATGAGGAGGGCAGGTCTTGAACCTAGTGACAAATGCATAGCTTTGATATTAGGTGCGTATGAAAAGGAAAACAGACTAAACACAGCACTGGAACTTCTAATAGACTTGGAGAAGGAGAATCTCATAGTTGGGAAGGAAGCATCGGCAATTTTGGCAGCTTGGTTTAAAAGACTAGGAGTGGTAGAAGAGGTAGAACTTGTATTGAGAGAGTATGCTTCGAAAGAAGCGAGCAGATAA

mRNA sequence

ATGGAAACCTCCGCCTGTAGCATTCTCCATCGATTTCATTCCAAACAACCACCCATCAATGGAACTTCAACAAGAAAAGCTTCAATTGACCGAACACTAAGAGTTGTAAGCTCTCGCCGAAGGTGTTTGGCTGTTGTTGCCGCCATTGTTGATCAGGTTCCAGAGTTAGTGAGTGAAAGCGAAAAACCTAGGTTTCGGTGGGCGGAGGTGGGGTCGGATATTGCTGAATTTCAGAAGCAGGCCATTTCTCGGCTTCCTCCTAAGATGAGCAAAAGATGTAAGGCTCTGATGAAGCAGATTATCTGTTTTTCGCCTCGAAAGGGCGATTTAGCAGATTTGTTGGCGGCTTGGGTGAGGATTATGAAACCTAAAAGAGCTGATTGGCTTTTGGTTCTTAAGCATTTGAAGCTTTTGGACCATCCACTTTACATCCAGGTGGCAGAGGCTGCTCTTCTAGAGAAAACATTTGAAGCCAGTACCCGAGACTACACGAAGATTATTTATCACTACGGGAAGCAAAACCAACTCGAGGATGCTGAAAAAGTTCTCTTTAGCATGAAAGAAAGGGGTTTTGCTTATGATCAAATAATATTAACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAATCTGGCTGAACAAACTTTCGAAGAGCTCAAAATGCTTGAGCAACCGTTGGATAAAAAATCGTACGGTGCGATGATTATGGCATATATCAGGGCTGGGATACCTGAGAAAGGAGAAAACATTCTCAAAGAAATGGATGCAAAAGAAATTTATGCAGGAAGTGAAGTTTACAAGGCCATGTTAAGAGCATACTCCATGGCTGGAAATGCTGAAGGAGCCCAAAGGCTGTTTGATGCAATTCAACTGGCGGCTATTCCTCCTGATGAAAAGTTGTGTGGTCTTCTGATTAATGCATATTTGATGGCGGGTGAAAGCCGAAAGGCACGAATTTCATTTGATAATATGAGGAGGGCAGGTCTTGAACCTAGTGACAAATGCATAGCTTTGATATTAGGTGCGTATGAAAAGGAAAACAGACTAAACACAGCACTGGAACTTCTAATAGACTTGGAGAAGGAGAATCTCATAGTTGGGAAGGAAGCATCGGCAATTTTGGCAGCTTGGTTTAAAAGACTAGGAGTGGTAGAAGAGGTAGAACTTGTATTGAGAGAGTATGCTTCGAAAGAAGCGAGCAGATAA

Coding sequence (CDS)

ATGGAAACCTCCGCCTGTAGCATTCTCCATCGATTTCATTCCAAACAACCACCCATCAATGGAACTTCAACAAGAAAAGCTTCAATTGACCGAACACTAAGAGTTGTAAGCTCTCGCCGAAGGTGTTTGGCTGTTGTTGCCGCCATTGTTGATCAGGTTCCAGAGTTAGTGAGTGAAAGCGAAAAACCTAGGTTTCGGTGGGCGGAGGTGGGGTCGGATATTGCTGAATTTCAGAAGCAGGCCATTTCTCGGCTTCCTCCTAAGATGAGCAAAAGATGTAAGGCTCTGATGAAGCAGATTATCTGTTTTTCGCCTCGAAAGGGCGATTTAGCAGATTTGTTGGCGGCTTGGGTGAGGATTATGAAACCTAAAAGAGCTGATTGGCTTTTGGTTCTTAAGCATTTGAAGCTTTTGGACCATCCACTTTACATCCAGGTGGCAGAGGCTGCTCTTCTAGAGAAAACATTTGAAGCCAGTACCCGAGACTACACGAAGATTATTTATCACTACGGGAAGCAAAACCAACTCGAGGATGCTGAAAAAGTTCTCTTTAGCATGAAAGAAAGGGGTTTTGCTTATGATCAAATAATATTAACCACAATGATCCACATATATAGCAAGGCTGACAAACTTAATCTGGCTGAACAAACTTTCGAAGAGCTCAAAATGCTTGAGCAACCGTTGGATAAAAAATCGTACGGTGCGATGATTATGGCATATATCAGGGCTGGGATACCTGAGAAAGGAGAAAACATTCTCAAAGAAATGGATGCAAAAGAAATTTATGCAGGAAGTGAAGTTTACAAGGCCATGTTAAGAGCATACTCCATGGCTGGAAATGCTGAAGGAGCCCAAAGGCTGTTTGATGCAATTCAACTGGCGGCTATTCCTCCTGATGAAAAGTTGTGTGGTCTTCTGATTAATGCATATTTGATGGCGGGTGAAAGCCGAAAGGCACGAATTTCATTTGATAATATGAGGAGGGCAGGTCTTGAACCTAGTGACAAATGCATAGCTTTGATATTAGGTGCGTATGAAAAGGAAAACAGACTAAACACAGCACTGGAACTTCTAATAGACTTGGAGAAGGAGAATCTCATAGTTGGGAAGGAAGCATCGGCAATTTTGGCAGCTTGGTTTAAAAGACTAGGAGTGGTAGAAGAGGTAGAACTTGTATTGAGAGAGTATGCTTCGAAAGAAGCGAGCAGATAA

Protein sequence

METSACSILHRFHSKQPPINGTSTRKASIDRTLRVVSSRRRCLAVVAAIVDQVPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLADLLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGKQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKSYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLNTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEASR
Homology
BLAST of Sed0003475 vs. NCBI nr
Match: KAG6582566.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018949.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 627.5 bits (1617), Expect = 8.1e-176
Identity = 319/410 (77.80%), Postives = 367/410 (89.51%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRKAS------IDRTLRVVSSRRRC--LAVVAAIVDQ 60
           METS C+IL++ H KQP +NGT+    S        R LRV+S RRRC  LA+VAAIV++
Sbjct: 1   METSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRRCYQLAIVAAIVEE 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V  L S  EKPRFRW EVGSDI E QKQAIS+LPPKM+KRCKA+MKQIICFSP+ G+L+D
Sbjct: 61  VHTLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFSPQNGNLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           +LAAWVRIMKPKRADWL VLKHL++LDHPLYI+VAEAAL+E+TFEASTRDYTKII++YGK
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIEVAEAALVERTFEASTRDYTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           +NQLEDAE++L  MKERGFA DQI LTTMIHIYSKAD+LNLA+QTFE++K+LE+PLD++S
Sbjct: 181 RNQLEDAERILLCMKERGFACDQITLTTMIHIYSKADELNLAKQTFEDIKLLEEPLDRRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           Y AMIMA+IRAG+PE+GENILKEMD K+IYAGSEVYKA+LRAYSMA NAEGAQR+FDAIQ
Sbjct: 241 YDAMIMAFIRAGMPEEGENILKEMDEKDIYAGSEVYKALLRAYSMASNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPD+KLCGLLINAYLMAG+S+KA+I+FDNMRRAGLEPSDKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDDKLCGLLINAYLMAGQSQKAQIAFDNMRRAGLEPSDKCIALVLSAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKE L+VGKEAS +LAAW KRLGVVEEVELVLREYA KEAS
Sbjct: 361 AALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

BLAST of Sed0003475 vs. NCBI nr
Match: XP_022147089.1 (pentatricopeptide repeat-containing protein At1g01970 [Momordica charantia])

HSP 1 Score: 624.8 bits (1610), Expect = 5.2e-175
Identity = 320/410 (78.05%), Postives = 364/410 (88.78%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRK------ASIDRTLRVVSSRRRC--LAVVAAIVDQ 60
           M T  C+I+++ H +QP +NG +          S+++  RV SSRR C  LAV AAIV++
Sbjct: 1   MGTFPCNIIYQLHPRQPLVNGIAEGSCYCYLGGSVEQRRRVFSSRRSCSQLAVAAAIVER 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V E  SE EK RFRW EVGSDI E QKQAISRLPPKM+KRCKALM+QIICFSP+KG+L+D
Sbjct: 61  VRETGSEIEKLRFRWVEVGSDITETQKQAISRLPPKMAKRCKALMRQIICFSPQKGNLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           LL AWVRIMKPKRADWLLVLKHL+L +HP YI+VAEAALLEKTFEASTRD+TKII++YGK
Sbjct: 121 LLTAWVRIMKPKRADWLLVLKHLRLFNHPFYIEVAEAALLEKTFEASTRDFTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           QN+LEDAEK+L SMKE+GFA DQI LTTM+HIYSKADKLNLA+QTFEELK+LEQPLDK+S
Sbjct: 181 QNRLEDAEKILLSMKEKGFACDQITLTTMVHIYSKADKLNLAKQTFEELKLLEQPLDKRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           YGAMIMAYIRAG+P++GE+IL+EMDAKEIYAGSEVYKA+LRAYSM GNAEGAQR+FDAIQ
Sbjct: 241 YGAMIMAYIRAGMPQEGESILREMDAKEIYAGSEVYKALLRAYSMTGNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPDEKLCGLLINAYLMAG+++K RISFDNMR+AGLEP DKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDEKLCGLLINAYLMAGQTQKVRISFDNMRKAGLEPVDKCIALVLAAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKENL+VGKEAS ILAAWFKRLGV+EEVELVLREYA K AS
Sbjct: 361 AALELLIDLEKENLMVGKEASEILAAWFKRLGVIEEVELVLREYAMKGAS 410

BLAST of Sed0003475 vs. NCBI nr
Match: XP_022924339.1 (pentatricopeptide repeat-containing protein At1g01970 [Cucurbita moschata] >XP_022924340.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita moschata] >XP_022924341.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita moschata])

HSP 1 Score: 624.0 bits (1608), Expect = 8.9e-175
Identity = 318/410 (77.56%), Postives = 366/410 (89.27%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRKAS------IDRTLRVVSSRRRC--LAVVAAIVDQ 60
           METS C+IL++ H KQP +NGT+    S        R LRV+S RRRC  L  VAAIV++
Sbjct: 1   METSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRRCYQLCAVAAIVEE 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V +L S  EKPRFRW EVGSDI E QKQAIS+LPPKM+KRCKA+MKQIICFSP+ G+L+D
Sbjct: 61  VHKLESGREKPRFRWLEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFSPQNGNLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           +LAAWVRIMKPKRADWL VLKHL++LDHPLYI+VAEAAL+E+TFEASTRDYTKII++YGK
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIEVAEAALVERTFEASTRDYTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           +NQLEDAE++L SM+ERGFA DQI LTTMIHIYSKAD+L+LA+QTFEELK+LE+PLD++S
Sbjct: 181 RNQLEDAERILLSMRERGFACDQITLTTMIHIYSKADELSLAKQTFEELKLLEEPLDRRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           Y AMIMA+IRAG+PE+GENILKEMD K+IYAGSEVYKA+LRAYSMA NAEGAQR+FDAIQ
Sbjct: 241 YDAMIMAFIRAGMPEEGENILKEMDEKDIYAGSEVYKALLRAYSMASNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPD+KLCGLLINAYLMA +S+KA+I+FDNMRRAGLEPSDKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDDKLCGLLINAYLMADQSQKAQIAFDNMRRAGLEPSDKCIALVLSAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKE L+VGKEAS +LAAW KRLGVVEEVELVLREYA KEAS
Sbjct: 361 AALELLIDLEKEKLVVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

BLAST of Sed0003475 vs. NCBI nr
Match: XP_023526280.1 (pentatricopeptide repeat-containing protein At1g01970 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526281.1 pentatricopeptide repeat-containing protein At1g01970 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 623.2 bits (1606), Expect = 1.5e-174
Identity = 318/410 (77.56%), Postives = 366/410 (89.27%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRKAS------IDRTLRVVSSRRRC--LAVVAAIVDQ 60
           M TS C+IL++ H KQP +NGT+    S        R LRV+S RRRC  LA VAAIV++
Sbjct: 1   MGTSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRRCYQLATVAAIVEE 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V  L S  EKPRFRW EVGSDI E QKQAIS+LPPKM+KRCKA+MKQIICFSP+ G+L+D
Sbjct: 61  VHTLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFSPQNGNLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           +LAAWVRIMKPKRADWL VLKHL++LDHPLYI+VAEAAL+E+TFEASTRDYTKII++YGK
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIEVAEAALVERTFEASTRDYTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           +NQLEDAE++L SM+ERGFA DQI LTTMIHIYSKAD+L+LA+QTFEELK+LE+PLD++S
Sbjct: 181 RNQLEDAERILLSMRERGFACDQITLTTMIHIYSKADELSLAKQTFEELKLLEEPLDRRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           Y AMIMA+IRAG+PE+GENILKEMD K+IYAGSEVYKA+LRAYSMA NA+GAQR+FDAIQ
Sbjct: 241 YDAMIMAFIRAGMPEEGENILKEMDEKDIYAGSEVYKALLRAYSMASNADGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPD+KLCGLLINAYLMAG+S+KA+I+FDNMRRAGLEPSDKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDDKLCGLLINAYLMAGQSQKAQIAFDNMRRAGLEPSDKCIALVLSAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKE L+VGKEAS +LAAW KRLGVVEEVELVLREYA KEAS
Sbjct: 361 AALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

BLAST of Sed0003475 vs. NCBI nr
Match: XP_022980308.1 (pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980309.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980310.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980311.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980312.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022980313.1 pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima])

HSP 1 Score: 622.9 bits (1605), Expect = 2.0e-174
Identity = 318/410 (77.56%), Postives = 364/410 (88.78%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRKAS------IDRTLRVVSSRRRC--LAVVAAIVDQ 60
           M TS C+IL++ H KQP +NGT+    S        R LRV+S RR C  LA VAAIV++
Sbjct: 1   MGTSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRTCYQLATVAAIVEE 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V +L S  EKPRFRW EVGSDI E QKQAIS+LPPKM+KRCKA+MKQIICF P+ G L+D
Sbjct: 61  VHKLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFLPQNGHLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           +LAAWVRIMKPKRADWL VLKHL++LDHPLYI+VAEAAL+E+TFEASTRDYTKII++YGK
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIEVAEAALVERTFEASTRDYTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           QNQLEDAE++L SM+ERGFA DQI LTTMIHIYSKAD+LNLA+QTFEELK+LE+PLD++S
Sbjct: 181 QNQLEDAERILLSMRERGFACDQITLTTMIHIYSKADELNLAKQTFEELKLLEEPLDRRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           Y AMIMA++RAG+PE+GENILKEMD K+IYAGSEVYKA+LRAYSMA NAEGAQR+FDAIQ
Sbjct: 241 YDAMIMAFVRAGMPEEGENILKEMDEKDIYAGSEVYKALLRAYSMASNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPD+KLCGLLINAYLMAG+S+KA+I+FDNMRRAGLEPSDKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDDKLCGLLINAYLMAGQSQKAQIAFDNMRRAGLEPSDKCIALVLSAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKE L+VGKEAS +LAAW KRLGVVEEVELVLREYA KEAS
Sbjct: 361 AALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

BLAST of Sed0003475 vs. ExPASy Swiss-Prot
Match: Q9LPC4 (Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana OX=3702 GN=At1g01970 PE=2 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 3.0e-125
Identity = 217/360 (60.28%), Postives = 289/360 (80.28%), Query Frame = 0

Query: 42  CLAVVAAIVDQVPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQII 101
           C    +  + +V E     +   F WA+VG ++ E Q +AI+R+P KMSKRC+ALM+QII
Sbjct: 47  CKCNASLAIGEVVEKEDAEQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALMRQII 106

Query: 102 CFSPRKGDLADLLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTR 161
           CFSP KG   DLL AW+R M P RADWL +LK LK LD P YI+VAE +LL+ +FEA+ R
Sbjct: 107 CFSPEKGSFCDLLGAWLRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLQDSFEANAR 166

Query: 162 DYTKIIYHYGKQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEEL 221
           DYTKII++YGK NQ+EDAE+ L SMK RGF  DQ+ LT M+ +YSKA    LAE+TF E+
Sbjct: 167 DYTKIIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEI 226

Query: 222 KMLEQPLDKKSYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNA 281
           K+L +PLD +SYG+MIMAYIRAG+PEKGE++L+EMD++EI AG EVYKA+LR YSM G+A
Sbjct: 227 KLLGEPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDA 286

Query: 282 EGAQRLFDAIQLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALI 341
           EGA+R+FDA+Q+A I PD KLCGLLINAY ++G+S+ AR++F+NMR+AG++ +DKC+AL+
Sbjct: 287 EGAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALV 346

Query: 342 LGAYEKENRLNTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEA 401
           L AYEKE +LN AL  L++LEK+++++GKEASA+LA WFK+LGVVEEVEL+LRE++S ++
Sbjct: 347 LAAYEKEEKLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQS 406

BLAST of Sed0003475 vs. ExPASy Swiss-Prot
Match: Q940Z1 (Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana OX=3702 GN=At1g19525 PE=2 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 4.8e-38
Identity = 86/209 (41.15%), Postives = 126/209 (60.29%), Query Frame = 0

Query: 186 MKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKSYGAMIMAYIRAGI 245
           M + G   D +  T ++H+YSK+     A + FE LK      D+K Y AMI+ Y+ AG 
Sbjct: 1   MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60

Query: 246 PEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQLAAIPP-DEKLCG 305
           P+ GE ++KEM AKE+ A  EVY A+LRAY+  G+A GA  +  ++Q A+  P   +   
Sbjct: 61  PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120

Query: 306 LLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLNTALELLIDLEKE 365
           L + AY  AG+  KA+ +FD MR+ G +P DKCIA ++ AY+ EN L+ AL LL+ LEK+
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180

Query: 366 NLIVGKEASAILAAWFKRLGVVEEVELVL 394
            + +G     +L  W   LG++EE E +L
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLL 209

BLAST of Sed0003475 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-14
Identity = 56/224 (25.00%), Postives = 104/224 (46.43%), Query Frame = 0

Query: 172 KQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKK 231
           ++   E+A  V   MK             MI++Y KA K  ++ + + E++  +   +  
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC 300

Query: 232 SYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAI 291
           +Y A++ A+ R G+ EK E I +++    +     VY A++ +YS AG   GA  +F  +
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360

Query: 292 QLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRL 351
           Q     PD     ++++AY  AG    A   F+ M+R G+ P+ K   L+L AY K   +
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDV 420

Query: 352 NTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLRE 396
                ++ ++ +  +         +   + RLG   ++E +L E
Sbjct: 421 TKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 464

BLAST of Sed0003475 vs. ExPASy Swiss-Prot
Match: Q5G1S8 (Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB1270 PE=2 SV=2)

HSP 1 Score: 80.1 bits (196), Expect = 6.3e-14
Identity = 54/211 (25.59%), Postives = 102/211 (48.34%), Query Frame = 0

Query: 154 KTFEASTRDYTKIIYHYGKQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNL 213
           K F      Y  ++Y + ++   E  ++V   M++ GF  D++   T+IH+Y K  +L+L
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDL 420

Query: 214 AEQTFEELKMLE-QPLDKKSYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAML 273
           A Q ++++K L  +  D  +Y  +I +  +A    +   ++ EM    I    + Y A++
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480

Query: 274 RAYSMAGNAEGAQRLFDAIQLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLE 333
             Y+ AG  E A+  F  +  +   PD     ++++  L   E+RKA   + +M   G  
Sbjct: 481 CGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540

Query: 334 PSDKCIALILGAYEKENRLNTALELLIDLEK 364
           PS     L++    KENR +   + + D+E+
Sbjct: 541 PSYTLYELMILGLMKENRSDDIQKTIRDMEE 571

BLAST of Sed0003475 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-12
Identity = 55/246 (22.36%), Postives = 102/246 (41.46%), Query Frame = 0

Query: 157 EASTRDYTKIIYHYGKQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQ 216
           E S   +  ++    K   +EDAE VL  MK+ GF  D    + +   YS  +K   A  
Sbjct: 281 EPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALG 340

Query: 217 TFEELKMLEQPLDKKSYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYS 276
            +E        ++  +   ++ A  + G  EK E IL    AK +     +Y  M+  Y 
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYC 400

Query: 277 MAGNAEGAQRLFDAIQLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDK 336
             G+  GA+   +A++   + PD      LI  +   GE   A    + M+  G+ PS +
Sbjct: 401 RKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVE 460

Query: 337 CIALILGAYEKENRLNTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREY 396
              +++G Y ++   +   ++L ++E    +    +   L     +   + E ++V R+ 
Sbjct: 461 TYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDM 520

Query: 397 ASKEAS 403
             +  S
Sbjct: 521 EDRGVS 526

BLAST of Sed0003475 vs. ExPASy TrEMBL
Match: A0A6J1D001 (pentatricopeptide repeat-containing protein At1g01970 OS=Momordica charantia OX=3673 GN=LOC111016111 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.5e-175
Identity = 320/410 (78.05%), Postives = 364/410 (88.78%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRK------ASIDRTLRVVSSRRRC--LAVVAAIVDQ 60
           M T  C+I+++ H +QP +NG +          S+++  RV SSRR C  LAV AAIV++
Sbjct: 1   MGTFPCNIIYQLHPRQPLVNGIAEGSCYCYLGGSVEQRRRVFSSRRSCSQLAVAAAIVER 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V E  SE EK RFRW EVGSDI E QKQAISRLPPKM+KRCKALM+QIICFSP+KG+L+D
Sbjct: 61  VRETGSEIEKLRFRWVEVGSDITETQKQAISRLPPKMAKRCKALMRQIICFSPQKGNLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           LL AWVRIMKPKRADWLLVLKHL+L +HP YI+VAEAALLEKTFEASTRD+TKII++YGK
Sbjct: 121 LLTAWVRIMKPKRADWLLVLKHLRLFNHPFYIEVAEAALLEKTFEASTRDFTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           QN+LEDAEK+L SMKE+GFA DQI LTTM+HIYSKADKLNLA+QTFEELK+LEQPLDK+S
Sbjct: 181 QNRLEDAEKILLSMKEKGFACDQITLTTMVHIYSKADKLNLAKQTFEELKLLEQPLDKRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           YGAMIMAYIRAG+P++GE+IL+EMDAKEIYAGSEVYKA+LRAYSM GNAEGAQR+FDAIQ
Sbjct: 241 YGAMIMAYIRAGMPQEGESILREMDAKEIYAGSEVYKALLRAYSMTGNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPDEKLCGLLINAYLMAG+++K RISFDNMR+AGLEP DKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDEKLCGLLINAYLMAGQTQKVRISFDNMRKAGLEPVDKCIALVLAAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKENL+VGKEAS ILAAWFKRLGV+EEVELVLREYA K AS
Sbjct: 361 AALELLIDLEKENLMVGKEASEILAAWFKRLGVIEEVELVLREYAMKGAS 410

BLAST of Sed0003475 vs. ExPASy TrEMBL
Match: A0A6J1EER0 (pentatricopeptide repeat-containing protein At1g01970 OS=Cucurbita moschata OX=3662 GN=LOC111431862 PE=4 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 4.3e-175
Identity = 318/410 (77.56%), Postives = 366/410 (89.27%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRKAS------IDRTLRVVSSRRRC--LAVVAAIVDQ 60
           METS C+IL++ H KQP +NGT+    S        R LRV+S RRRC  L  VAAIV++
Sbjct: 1   METSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRRCYQLCAVAAIVEE 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V +L S  EKPRFRW EVGSDI E QKQAIS+LPPKM+KRCKA+MKQIICFSP+ G+L+D
Sbjct: 61  VHKLESGREKPRFRWLEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFSPQNGNLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           +LAAWVRIMKPKRADWL VLKHL++LDHPLYI+VAEAAL+E+TFEASTRDYTKII++YGK
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIEVAEAALVERTFEASTRDYTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           +NQLEDAE++L SM+ERGFA DQI LTTMIHIYSKAD+L+LA+QTFEELK+LE+PLD++S
Sbjct: 181 RNQLEDAERILLSMRERGFACDQITLTTMIHIYSKADELSLAKQTFEELKLLEEPLDRRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           Y AMIMA+IRAG+PE+GENILKEMD K+IYAGSEVYKA+LRAYSMA NAEGAQR+FDAIQ
Sbjct: 241 YDAMIMAFIRAGMPEEGENILKEMDEKDIYAGSEVYKALLRAYSMASNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPD+KLCGLLINAYLMA +S+KA+I+FDNMRRAGLEPSDKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDDKLCGLLINAYLMADQSQKAQIAFDNMRRAGLEPSDKCIALVLSAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKE L+VGKEAS +LAAW KRLGVVEEVELVLREYA KEAS
Sbjct: 361 AALELLIDLEKEKLVVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

BLAST of Sed0003475 vs. ExPASy TrEMBL
Match: A0A6J1IR15 (pentatricopeptide repeat-containing protein At1g01970 OS=Cucurbita maxima OX=3661 GN=LOC111479721 PE=4 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.6e-175
Identity = 318/410 (77.56%), Postives = 364/410 (88.78%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTSTRKAS------IDRTLRVVSSRRRC--LAVVAAIVDQ 60
           M TS C+IL++ H KQP +NGT+    S        R LRV+S RR C  LA VAAIV++
Sbjct: 1   MGTSVCNILYQIHPKQPLVNGTARSSYSCYCRGLTGRRLRVLSPRRTCYQLATVAAIVEE 60

Query: 61  VPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLAD 120
           V +L S  EKPRFRW EVGSDI E QKQAIS+LPPKM+KRCKA+MKQIICF P+ G L+D
Sbjct: 61  VHKLESGREKPRFRWVEVGSDITEMQKQAISQLPPKMTKRCKAVMKQIICFLPQNGHLSD 120

Query: 121 LLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGK 180
           +LAAWVRIMKPKRADWL VLKHL++LDHPLYI+VAEAAL+E+TFEASTRDYTKII++YGK
Sbjct: 121 MLAAWVRIMKPKRADWLSVLKHLRILDHPLYIEVAEAALVERTFEASTRDYTKIIHYYGK 180

Query: 181 QNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKS 240
           QNQLEDAE++L SM+ERGFA DQI LTTMIHIYSKAD+LNLA+QTFEELK+LE+PLD++S
Sbjct: 181 QNQLEDAERILLSMRERGFACDQITLTTMIHIYSKADELNLAKQTFEELKLLEEPLDRRS 240

Query: 241 YGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQ 300
           Y AMIMA++RAG+PE+GENILKEMD K+IYAGSEVYKA+LRAYSMA NAEGAQR+FDAIQ
Sbjct: 241 YDAMIMAFVRAGMPEEGENILKEMDEKDIYAGSEVYKALLRAYSMASNAEGAQRVFDAIQ 300

Query: 301 LAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLN 360
           LAAIPPD+KLCGLLINAYLMAG+S+KA+I+FDNMRRAGLEPSDKCIAL+L AYEKENRLN
Sbjct: 301 LAAIPPDDKLCGLLINAYLMAGQSQKAQIAFDNMRRAGLEPSDKCIALVLSAYEKENRLN 360

Query: 361 TALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEAS 403
            ALELLIDLEKE L+VGKEAS +LAAW KRLGVVEEVELVLREYA KEAS
Sbjct: 361 AALELLIDLEKEKLMVGKEASEVLAAWLKRLGVVEEVELVLREYAVKEAS 410

BLAST of Sed0003475 vs. ExPASy TrEMBL
Match: A0A0A0L7L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126080 PE=4 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 2.2e-171
Identity = 315/406 (77.59%), Postives = 360/406 (88.67%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTS-TRKASIDRTLRVVSSRRRC--LAVVAAIVDQVPELV 60
           M+ S  +IL++ H   P +NGTS T  +   R   V+SSRRRC  +A   AIVD++ +L 
Sbjct: 1   MQISTSNILYQLH--LPLVNGTSNTSYSRYWRDSIVLSSRRRCSQMATATAIVDEIHKLE 60

Query: 61  SESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLADLLAAW 120
           SE EKPRFRW EVG DI E QKQAIS+LPPKM+KRCKA+MKQIICFSP+KG+L+D+LAAW
Sbjct: 61  SEREKPRFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGELSDMLAAW 120

Query: 121 VRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGKQNQLE 180
           VRIMKP+RADWLLVLKHL++L+HPLYIQVAEAAL E TFEA+TRDYTKII+HYGKQNQLE
Sbjct: 121 VRIMKPERADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGKQNQLE 180

Query: 181 DAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKSYGAMI 240
           DAEKVL SM+ERGF  DQI LTTMIHIYSKADKLNLA+QTFEELK+LEQPLDK+S+GAMI
Sbjct: 181 DAEKVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDKRSFGAMI 240

Query: 241 MAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQLAAIP 300
           MAY+RAG PE+GE ILKEMDAK+IYAGSEVYKA+LRAYSM GNAEGAQR+FDAIQLAAI 
Sbjct: 241 MAYVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQLAAIT 300

Query: 301 PDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLNTALEL 360
           PDEKLCGLLINAYLMAG+SR+A+I+FDNMRRAG+EPSDKCIAL L AYEKENRLN+ALEL
Sbjct: 301 PDEKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNSALEL 360

Query: 361 LIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEASR 404
           LIDLEK+N++VGKEAS ILAAW KRLGVVEEVE+VLREY  KE +R
Sbjct: 361 LIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEVNR 404

BLAST of Sed0003475 vs. ExPASy TrEMBL
Match: A0A5D3D032 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004020 PE=4 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 4.2e-170
Identity = 311/406 (76.60%), Postives = 362/406 (89.16%), Query Frame = 0

Query: 1   METSACSILHRFHSKQPPINGTS-TRKASIDRTLRVVSSRRRC--LAVVAAIVDQVPELV 60
           M  S  +IL++ H   P +NGTS T  +   +   V++SRRRC  +A V AIVD++ +L 
Sbjct: 1   MHISTSNILYQLH--LPLVNGTSNTSSSRYWKDSIVLNSRRRCSQMATVTAIVDELHKLE 60

Query: 61  SESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLADLLAAW 120
           SE EKPRFRW EVG +I E QKQAIS+LPPKM+K+CKA+MKQIICFSP+KG+L+D+LAAW
Sbjct: 61  SEREKPRFRWVEVGYNITETQKQAISQLPPKMTKKCKAVMKQIICFSPQKGELSDMLAAW 120

Query: 121 VRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGKQNQLE 180
           VRIMKP+RADWL VLKHL++L+HPLYIQVAEAAL+E TFEA+TRDYTKII+HYGKQNQLE
Sbjct: 121 VRIMKPERADWLSVLKHLRILNHPLYIQVAEAALVEITFEANTRDYTKIIHHYGKQNQLE 180

Query: 181 DAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKSYGAMI 240
           DAEKVL +M+ERGFA DQI LTTMIHIYSKADKL LA+QTFEELK+LEQ LDK+SYGAMI
Sbjct: 181 DAEKVLLTMRERGFACDQITLTTMIHIYSKADKLKLAKQTFEELKLLEQSLDKRSYGAMI 240

Query: 241 MAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQLAAIP 300
           MAY+RAG+PE+GE ILKEMDAK+IYAGSEVYKA+LRAYSMAG+AEGAQR+FDAIQLAAIP
Sbjct: 241 MAYVRAGLPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMAGDAEGAQRVFDAIQLAAIP 300

Query: 301 PDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLNTALEL 360
           PDEKLCGLL+NAYLMAG+SRKA+I+FDNMRRAG+EPSDKCIAL L AYEKENRLN ALEL
Sbjct: 301 PDEKLCGLLMNAYLMAGQSRKAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNAALEL 360

Query: 361 LIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEASR 404
           LIDLEK+N++VGKEAS ILAAW KRLGVVEE+E+VLREY +KE SR
Sbjct: 361 LIDLEKDNVMVGKEASQILAAWLKRLGVVEEIEIVLREYTAKEVSR 404

BLAST of Sed0003475 vs. TAIR 10
Match: AT1G01970.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 449.9 bits (1156), Expect = 2.2e-126
Identity = 217/360 (60.28%), Postives = 289/360 (80.28%), Query Frame = 0

Query: 42  CLAVVAAIVDQVPELVSESEKPRFRWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQII 101
           C    +  + +V E     +   F WA+VG ++ E Q +AI+R+P KMSKRC+ALM+QII
Sbjct: 47  CKCNASLAIGEVVEKEDAEQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALMRQII 106

Query: 102 CFSPRKGDLADLLAAWVRIMKPKRADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTR 161
           CFSP KG   DLL AW+R M P RADWL +LK LK LD P YI+VAE +LL+ +FEA+ R
Sbjct: 107 CFSPEKGSFCDLLGAWLRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLQDSFEANAR 166

Query: 162 DYTKIIYHYGKQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEEL 221
           DYTKII++YGK NQ+EDAE+ L SMK RGF  DQ+ LT M+ +YSKA    LAE+TF E+
Sbjct: 167 DYTKIIHYYGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEI 226

Query: 222 KMLEQPLDKKSYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNA 281
           K+L +PLD +SYG+MIMAYIRAG+PEKGE++L+EMD++EI AG EVYKA+LR YSM G+A
Sbjct: 227 KLLGEPLDYRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDA 286

Query: 282 EGAQRLFDAIQLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALI 341
           EGA+R+FDA+Q+A I PD KLCGLLINAY ++G+S+ AR++F+NMR+AG++ +DKC+AL+
Sbjct: 287 EGAKRVFDAVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALV 346

Query: 342 LGAYEKENRLNTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLREYASKEA 401
           L AYEKE +LN AL  L++LEK+++++GKEASA+LA WFK+LGVVEEVEL+LRE++S ++
Sbjct: 347 LAAYEKEEKLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQS 406

BLAST of Sed0003475 vs. TAIR 10
Match: AT1G19520.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 237.3 bits (604), Expect = 2.2e-62
Identity = 126/329 (38.30%), Postives = 198/329 (60.18%), Query Frame = 0

Query: 66  RWAEVGSDIAEFQKQAISRLPPKMSKRCKALMKQIICFSPRKGDLADLLAAWVRIMKPKR 125
           +W E+   I E +++A  R P  ++ +CK +M+++        D + LLA W  +++P R
Sbjct: 291 KWVEMADKIHEAEEEADWREPKPVTGKCKLVMEKLESLQ-EGDDPSGLLAEWAELLEPNR 350

Query: 126 ADWLLVLKHLKLLDHPLYIQVAEAALLEKTFEASTRDYTKIIYHYGKQNQLEDAEKVLFS 185
            DW+ ++  L+  +   Y++VAE  L EK+F AS  DY+K+I+ + K+N +ED E++L  
Sbjct: 351 VDWIALINQLREGNTHAYLKVAEGVLDEKSFNASISDYSKLIHIHAKENHIEDVERILKK 410

Query: 186 MKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKKSYGAMIMAYIRAGI 245
           M + G   D +  T ++H+YSK+     A + FE LK      D+K Y AMI+ Y+ AG 
Sbjct: 411 MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 470

Query: 246 PEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAIQLAAIPP-DEKLCG 305
           P+ GE ++KEM AKE+ A  EVY A+LRAY+  G+A GA  +  ++Q A+  P   +   
Sbjct: 471 PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 530

Query: 306 LLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRLNTALELLIDLEKE 365
           L + AY  AG+  KA+ +FD MR+ G +P DKCIA ++ AY+ EN L+ AL LL+ LEK+
Sbjct: 531 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 590

Query: 366 NLIVGKEASAILAAWFKRLGVVEEVELVL 394
            + +G     +L  W   LG++EE E +L
Sbjct: 591 GIEIGVITYTVLVDWMANLGLIEEAEQLL 618

BLAST of Sed0003475 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-15
Identity = 56/224 (25.00%), Postives = 104/224 (46.43%), Query Frame = 0

Query: 172 KQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKK 231
           ++   E+A  V   MK             MI++Y KA K  ++ + + E++  +   +  
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC 300

Query: 232 SYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAI 291
           +Y A++ A+ R G+ EK E I +++    +     VY A++ +YS AG   GA  +F  +
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360

Query: 292 QLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRL 351
           Q     PD     ++++AY  AG    A   F+ M+R G+ P+ K   L+L AY K   +
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDV 420

Query: 352 NTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLRE 396
                ++ ++ +  +         +   + RLG   ++E +L E
Sbjct: 421 TKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 464

BLAST of Sed0003475 vs. TAIR 10
Match: AT2G35130.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-15
Identity = 56/224 (25.00%), Postives = 104/224 (46.43%), Query Frame = 0

Query: 172 KQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNLAEQTFEELKMLEQPLDKK 231
           ++   E+A  V   MK             MI++Y KA K  ++ + + E++  +   +  
Sbjct: 263 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNIC 322

Query: 232 SYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAMLRAYSMAGNAEGAQRLFDAI 291
           +Y A++ A+ R G+ EK E I +++    +     VY A++ +YS AG   GA  +F  +
Sbjct: 323 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 382

Query: 292 QLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLEPSDKCIALILGAYEKENRL 351
           Q     PD     ++++AY  AG    A   F+ M+R G+ P+ K   L+L AY K   +
Sbjct: 383 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDV 442

Query: 352 NTALELLIDLEKENLIVGKEASAILAAWFKRLGVVEEVELVLRE 396
                ++ ++ +  +         +   + RLG   ++E +L E
Sbjct: 443 TKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE 486

BLAST of Sed0003475 vs. TAIR 10
Match: AT3G18110.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 4.5e-15
Identity = 54/211 (25.59%), Postives = 102/211 (48.34%), Query Frame = 0

Query: 154 KTFEASTRDYTKIIYHYGKQNQLEDAEKVLFSMKERGFAYDQIILTTMIHIYSKADKLNL 213
           K F      Y  ++Y + ++   E  ++V   M++ GF  D++   T+IH+Y K  +L+L
Sbjct: 361 KGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDL 420

Query: 214 AEQTFEELKMLE-QPLDKKSYGAMIMAYIRAGIPEKGENILKEMDAKEIYAGSEVYKAML 273
           A Q ++++K L  +  D  +Y  +I +  +A    +   ++ EM    I    + Y A++
Sbjct: 421 ALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALI 480

Query: 274 RAYSMAGNAEGAQRLFDAIQLAAIPPDEKLCGLLINAYLMAGESRKARISFDNMRRAGLE 333
             Y+ AG  E A+  F  +  +   PD     ++++  L   E+RKA   + +M   G  
Sbjct: 481 CGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT 540

Query: 334 PSDKCIALILGAYEKENRLNTALELLIDLEK 364
           PS     L++    KENR +   + + D+E+
Sbjct: 541 PSYTLYELMILGLMKENRSDDIQKTIRDMEE 571

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6582566.18.1e-17677.80Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022147089.15.2e-17578.05pentatricopeptide repeat-containing protein At1g01970 [Momordica charantia][more]
XP_022924339.18.9e-17577.56pentatricopeptide repeat-containing protein At1g01970 [Cucurbita moschata] >XP_0... [more]
XP_023526280.11.5e-17477.56pentatricopeptide repeat-containing protein At1g01970 isoform X1 [Cucurbita pepo... [more]
XP_022980308.12.0e-17477.56pentatricopeptide repeat-containing protein At1g01970 [Cucurbita maxima] >XP_022... [more]
Match NameE-valueIdentityDescription
Q9LPC43.0e-12560.28Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana OX... [more]
Q940Z14.8e-3841.15Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana OX... [more]
O821781.7e-1425.00Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX... [more]
Q5G1S86.3e-1425.59Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidop... [more]
Q9FMQ11.6e-1222.36Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1D0012.5e-17578.05pentatricopeptide repeat-containing protein At1g01970 OS=Momordica charantia OX=... [more]
A0A6J1EER04.3e-17577.56pentatricopeptide repeat-containing protein At1g01970 OS=Cucurbita moschata OX=3... [more]
A0A6J1IR159.6e-17577.56pentatricopeptide repeat-containing protein At1g01970 OS=Cucurbita maxima OX=366... [more]
A0A0A0L7L82.2e-17177.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G126080 PE=4 SV=1[more]
A0A5D3D0324.2e-17076.60Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT1G01970.12.2e-12660.28Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G19520.12.2e-6238.30pentatricopeptide (PPR) repeat-containing protein [more]
AT2G35130.11.2e-1525.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT2G35130.21.2e-1525.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G18110.14.5e-1525.59Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 344..364
NoneNo IPR availablePANTHERPTHR46862:SF3OS07G0661900 PROTEINcoord: 44..402
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 198..222
e-value: 0.025
score: 14.8
coord: 163..191
e-value: 0.0034
score: 17.5
coord: 267..290
e-value: 0.038
score: 14.2
coord: 305..331
e-value: 0.49
score: 10.7
coord: 232..259
e-value: 0.0015
score: 18.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 163..194
e-value: 8.7E-6
score: 23.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 264..298
score: 8.747175
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 8.823904
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 299..333
score: 9.525427
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 229..263
score: 9.196589
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 118..265
e-value: 5.3E-19
score: 70.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 266..401
e-value: 5.7E-19
score: 70.6
IPR044657Pentatricopeptide repeat-containing protein NFD5-likePANTHERPTHR46862OS07G0661900 PROTEINcoord: 44..402

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003475.1Sed0003475.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding