Sed0003416 (gene) Chayote v1

Overview
NameSed0003416
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG06: 9774698 .. 9775405 (-)
RNA-Seq ExpressionSed0003416
SyntenySed0003416
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCATCTTTATCTTTCTTCTCTTCTAATTTATAAACTGAAAGCTTAGCTCCAATTATTGTTCATCCATTGTTTCTTTTTTTTTTCCTCCCTCCATTCTCAATCCAGTTCTATGAGATTTTCTCGAACCGCCCGTGCTGCAATGGCTCTGGCAATGGCAGTGCTGATTTTAGCCATTAGTGCTCGAGGCTGCAATGCTGCTTCTCAAAGTCCTTTGAGTTTCGGCAACGAGACCACTGCCACTATTTCAACGACGCGATGCGATGGACGAATCGATGAGTGCCTCGGAGGTGAAGATGATGTCGACTACTTGTTTCCAAGCCTTGTGAACATTATTAATCCTGCTACTGCCATCACCCCGAACAAAGATAAGCCTGCATGTGAACGGCCGGATTCGAAGTATGACTGTCTCGGCCGTAGACGCCAAATCTCTGAGCAAGAAACTTGTGACACATATAAGCGCAACTGTCCTCCCTAGTAGATCTAGAATGTGATAAGTCGATATGTACGTTATAATATCTTTAAGTTTATCTACTAATTCTACTTCCACTTGCCTATGCCAGGTTTCCAACTCCACTTCCCTTGGAACTTCACCTTTATTCTTCATATTATAATTGTATACTCTGCTTGTTCGGCGAATGTAATAACAAAAGTGTTAAAATATGGTGAAATCCCTACCTAAAGGGAAGTTTATTTAAAATTTTAATGCC

mRNA sequence

GGCATCTTTATCTTTCTTCTCTTCTAATTTATAAACTGAAAGCTTAGCTCCAATTATTGTTCATCCATTGTTTCTTTTTTTTTTCCTCCCTCCATTCTCAATCCAGTTCTATGAGATTTTCTCGAACCGCCCGTGCTGCAATGGCTCTGGCAATGGCAGTGCTGATTTTAGCCATTAGTGCTCGAGGCTGCAATGCTGCTTCTCAAAGTCCTTTGAGTTTCGGCAACGAGACCACTGCCACTATTTCAACGACGCGATGCGATGGACGAATCGATGAGTGCCTCGGAGGTGAAGATGATGTCGACTACTTGTTTCCAAGCCTTGTGAACATTATTAATCCTGCTACTGCCATCACCCCGAACAAAGATAAGCCTGCATGTGAACGGCCGGATTCGAAGTATGACTGTCTCGGCCGTAGACGCCAAATCTCTGAGCAAGAAACTTGTGACACATATAAGCGCAACTGTCCTCCCTAGTAGATCTAGAATGTGATAAGTCGATATGTACGTTATAATATCTTTAAGTTTATCTACTAATTCTACTTCCACTTGCCTATGCCAGGTTTCCAACTCCACTTCCCTTGGAACTTCACCTTTATTCTTCATATTATAATTGTATACTCTGCTTGTTCGGCGAATGTAATAACAAAAGTGTTAAAATATGGTGAAATCCCTACCTAAAGGGAAGTTTATTTAAAATTTTAATGCC

Coding sequence (CDS)

ATGAGATTTTCTCGAACCGCCCGTGCTGCAATGGCTCTGGCAATGGCAGTGCTGATTTTAGCCATTAGTGCTCGAGGCTGCAATGCTGCTTCTCAAAGTCCTTTGAGTTTCGGCAACGAGACCACTGCCACTATTTCAACGACGCGATGCGATGGACGAATCGATGAGTGCCTCGGAGGTGAAGATGATGTCGACTACTTGTTTCCAAGCCTTGTGAACATTATTAATCCTGCTACTGCCATCACCCCGAACAAAGATAAGCCTGCATGTGAACGGCCGGATTCGAAGTATGACTGTCTCGGCCGTAGACGCCAAATCTCTGAGCAAGAAACTTGTGACACATATAAGCGCAACTGTCCTCCCTAG

Protein sequence

MRFSRTARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLFPSLVNIINPATAITPNKDKPACERPDSKYDCLGRRRQISEQETCDTYKRNCPP
Homology
[Close]
BLAST of Sed0003416 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 47/112 (41.96%), Postives = 64/112 (57.14%), Query Frame = 0 

Query: 9   AAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDVDYLF 68
           AA A AM V IL +S   C+ AS +P S+GN T A  ++  CDGR++EC+  EDD +  F
Sbjct: 13  AAAAAAMGVFILMLSGSHCSVASPTPSSYGNITVAAAASMWCDGRVEECVTREDDGESAF 72

Query: 69  PSLVNIINPATAI-TPNKDKPACERPDSKYDCLGRRRQISEQETCDTYKRNC 120
           PSL+       +  T N++KP CERP     C   RR  ++ + C TY R C
Sbjct: 73  PSLLASTPKFISFPTRNRNKPVCERPGDYKSCFNARRTNTKNDNCGTYGRAC 124

[Close]
BLAST of Sed0003416 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-11
Identity = 46/120 (38.33%), Postives = 59/120 (49.17%), Query Frame = 0 

Query: 4   SRTARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDD 63
           S +     A AM V IL +S   CN AS +P S+GN T A  ++  CDGR++EC+  E D
Sbjct: 5   SNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVTREGD 64

Query: 64  VDYLFPSLV----NIINPATAITPNKDKPACERPDSKYDCLGRRRQISEQETCDTYKRNC 120
               FPSL       I+P++    N +K  CERPD    C   RR       C  Y R C
Sbjct: 65  SASAFPSLQTSTRKYISPSSV---NSNKAVCERPDEYRSCFNPRRSNPNPNNCGRYTRVC 121

[Close]
BLAST of Sed0003416 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 7  ARAAMALAMAVLILAISARGCNAASQSPLSFGNETTATISTTRCDGRIDECLGGEDDV-- 66
          A A MA   A+++L ++A   NAAS S  +FGNET A   +T CD R +ECL G+DDV  
Sbjct: 3  AAAMMAAVAAIVVLTLAASNGNAASLSRSNFGNETDAGAPSTWCDRRTEECLVGDDDVDG 62

Query: 67 -DYLFPSLVNIINPATAITPNKDKP 89
           D+L  + V+ ++  +  T N+++P
Sbjct: 63 SDFLSLAFVD-VSRISGRTGNENRP 86

The following BLAST results are available for this feature:
BLAST of Sed0003416 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607070.11.2e-1341.96hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607071.15.5e-1138.33hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607014.13.8e-0441.18Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Sed0003416 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0003416 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0003416 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003416.1Sed0003416.1mRNA