Sed0003406 (gene) Chayote v1

Overview


Name	Sed0003406
Type	gene
Organism	Sechium edule (Chayote v1)
Description	zinc finger CCCH domain-containing protein 20-like
Location	LG11: 181821 .. 183289 (-)
RNA-Seq Expression	Sed0003406
Synteny	Sed0003406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTCCCTGAAGGAGAAACAGAAGCAAAAGAAAAACCAAAACGAAGCAAAAATGGCAGAAATGGTGATCGGCGATAAACCAAACCGCCCTAACCAGACGCTTCTCATTCCTCCATGGACGTTTATGGATGATCCGCCGTCGGATGTGTGCAGTTATTCTCCGGGAAGCGGCGGAGGTGGATTCTCTCCCTACGCCATTCCGGACAAAAACGCCTTGTTGCAGCAGTATTTTCTCTGGAAAGAAGCGGAGATGGAGTCGGAATTTGATGTTTCAGGGCGGGAGTTGGATGCCTACTCCACCGATAAGTTCCGAATGTATGAGTTCAAGATCAAGAAGTGCACGAGAGGAAGATCGCACGATTGGACGGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCGCGGCGGCGAGATCCGAAGAGGTATTACTATTCCGGTACGGCGTGTGCGGAGTTTCGGAAGGGAAGCTGTAAGAAAGGAGATGCGTGTGAGTTTTCGCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTACCGGACTCAGCCGTGCAAGGACGGGACTAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGGCGGAGCAGCTTCGGGTTTTGCCTCAGCAGAGTCCAAAGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGCCAAGCGTTTGAGGCCTGTGCGAAACAAATCTCGTATTTATCTTCGCCGGGAACATCGCCGCCGTTTTCGCCTCCAATCGAGTCTCCGCCTCAATCGCCGATGATCAGATCGTTGAATCGGCCGATTTTACAGATCGGTAAGGTAGTACAATCGCCTTCTTCTTCTCCGTGGAATGTTTCTGTATTCGGATGTCCAGATGAATCCACCACCGGATCCGGTTTCTGCAGCCTTCCAGATACTCCGACTCGTCCAACCAGCCGATTTCTCGACTTGTGGGAGCTAGGTTCCGGCGAGGGACCGGCAATGGAGCGAGTCGAGTCCGGGAGAGATCTACGAGCGAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGATAAATACGATTGGGTCTCGGAGCTGCTTGGCGGTGGTAATTAATTTCACACCAAAAAATCAAAAAAATTCAAAGCTTCGTCTCTGATTCTAATTTGTCTCAATTACAACCGGGATTTCTTCAGGTTTTTATTGATTATTATTATTATAACAACATTATCAGAATAATCTGATAGGGATGAATTGGAATCTTTCGCAAGTATTTTTGTTTATTTTGAAGATTCTGTGTAAATATAAAGTCTTAAGTCGATTCCGTTTCGAGTTTGGGGAATTTTCCAGATGAGGGGAGGGGGTTCATAAAAGAGAAGGGTATCATTTTTGTATTATGTTTTAAGCGATTCATATATTCTTGCAATCGCTTTATTGTGTTTTGTGGGATTGTAAACTCTGTGATTGTA

mRNA sequence

TTCTTCTCCCTGAAGGAGAAACAGAAGCAAAAGAAAAACCAAAACGAAGCAAAAATGGCAGAAATGGTGATCGGCGATAAACCAAACCGCCCTAACCAGACGCTTCTCATTCCTCCATGGACGTTTATGGATGATCCGCCGTCGGATGTGTGCAGTTATTCTCCGGGAAGCGGCGGAGGTGGATTCTCTCCCTACGCCATTCCGGACAAAAACGCCTTGTTGCAGCAGTATTTTCTCTGGAAAGAAGCGGAGATGGAGTCGGAATTTGATGTTTCAGGGCGGGAGTTGGATGCCTACTCCACCGATAAGTTCCGAATGTATGAGTTCAAGATCAAGAAGTGCACGAGAGGAAGATCGCACGATTGGACGGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCGCGGCGGCGAGATCCGAAGAGGTATTACTATTCCGGTACGGCGTGTGCGGAGTTTCGGAAGGGAAGCTGTAAGAAAGGAGATGCGTGTGAGTTTTCGCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTACCGGACTCAGCCGTGCAAGGACGGGACTAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGGCGGAGCAGCTTCGGGTTTTGCCTCAGCAGAGTCCAAAGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGCCAAGCGTTTGAGGCCTGTGCGAAACAAATCTCGTATTTATCTTCGCCGGGAACATCGCCGCCGTTTTCGCCTCCAATCGAGTCTCCGCCTCAATCGCCGATGATCAGATCGTTGAATCGGCCGATTTTACAGATCGGTAAGGTAGTACAATCGCCTTCTTCTTCTCCGTGGAATGTTTCTGTATTCGGATGTCCAGATGAATCCACCACCGGATCCGGTTTCTGCAGCCTTCCAGATACTCCGACTCGTCCAACCAGCCGATTTCTCGACTTGTGGGAGCTAGGTTCCGGCGAGGGACCGGCAATGGAGCGAGTCGAGTCCGGGAGAGATCTACGAGCGAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGATAAATACGATTGGGTCTCGGAGCTGCTTGGCGGTGGTAATTAATTTCACACCAAAAAATCAAAAAAATTCAAAGCTTCGTCTCTGATTCTAATTTGTCTCAATTACAACCGGGATTTCTTCAGGTTTTTATTGATTATTATTATTATAACAACATTATCAGAATAATCTGATAGGGATGAATTGGAATCTTTCGCAAGTATTTTTGTTTATTTTGAAGATTCTGTGTAAATATAAAGTCTTAAGTCGATTCCGTTTCGAGTTTGGGGAATTTTCCAGATGAGGGGAGGGGGTTCATAAAAGAGAAGGGTATCATTTTTGTATTATGTTTTAAGCGATTCATATATTCTTGCAATCGCTTTATTGTGTTTTGTGGGATTGTAAACTCTGTGATTGTA

Coding sequence (CDS)

ATGGCAGAAATGGTGATCGGCGATAAACCAAACCGCCCTAACCAGACGCTTCTCATTCCTCCATGGACGTTTATGGATGATCCGCCGTCGGATGTGTGCAGTTATTCTCCGGGAAGCGGCGGAGGTGGATTCTCTCCCTACGCCATTCCGGACAAAAACGCCTTGTTGCAGCAGTATTTTCTCTGGAAAGAAGCGGAGATGGAGTCGGAATTTGATGTTTCAGGGCGGGAGTTGGATGCCTACTCCACCGATAAGTTCCGAATGTATGAGTTCAAGATCAAGAAGTGCACGAGAGGAAGATCGCACGATTGGACGGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCGCGGCGGCGAGATCCGAAGAGGTATTACTATTCCGGTACGGCGTGTGCGGAGTTTCGGAAGGGAAGCTGTAAGAAAGGAGATGCGTGTGAGTTTTCGCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGTTACCGGACTCAGCCGTGCAAGGACGGGACTAGTTGCCGGAGGAGAGTTTGCTTCTTCGCTCATACGGCGGAGCAGCTTCGGGTTTTGCCTCAGCAGAGTCCAAAGAGTACGAGCTCCATCCCTTCGTACGACGGATCGCCTCTCCGCCAAGCGTTTGAGGCCTGTGCGAAACAAATCTCGTATTTATCTTCGCCGGGAACATCGCCGCCGTTTTCGCCTCCAATCGAGTCTCCGCCTCAATCGCCGATGATCAGATCGTTGAATCGGCCGATTTTACAGATCGGTAAGGTAGTACAATCGCCTTCTTCTTCTCCGTGGAATGTTTCTGTATTCGGATGTCCAGATGAATCCACCACCGGATCCGGTTTCTGCAGCCTTCCAGATACTCCGACTCGTCCAACCAGCCGATTTCTCGACTTGTGGGAGCTAGGTTCCGGCGAGGGACCGGCAATGGAGCGAGTCGAGTCCGGGAGAGATCTACGAGCGAAAATGCTGGAGAAATTAAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAGGATAAATACGATTGGGTCTCGGAGCTGCTTGGCGGTGGTAATTAA

Protein sequence

MAEMVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLWKEAEMESEFDVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPFSPPIESPPQSPMIRSLNRPILQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSVGCGDQDKYDWVSELLGGGN

Homology

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BLAST of Sed0003406 vs. NCBI nr
Match: XP_038890937.1 (zinc finger CCCH domain-containing protein 20-like [Benincasa hispida])

HSP 1 Score: 543.5 bits (1399), Expect = 1.3e-150
Identity = 278/393 (70.74%), Postives = 308/393 (78.37%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGG------------GGFSPYAIPD 63
           M++G++P RPN T+ IPPWTF++D   DV S+SPGSGG            GG+SPY + +
Sbjct: 1   MIVGEQPKRPNPTVQIPPWTFLEDSAMDVYSHSPGSGGSSGSVKCDGCSSGGYSPYYLQE 60

Query: 64  KNALLQQYFLWKEAEMESEFDVSGREL----DAYSTDKFRMYEFKIKKCTRGRSHDWTEC 123
             A+L++Y    EAEM+S+FDVSGREL    DAYS+D+FRMYEFKIKKCTRGRSHDWTEC
Sbjct: 61  ALAMLKRYLPSNEAEMDSDFDVSGRELDSLVDAYSSDQFRMYEFKIKKCTRGRSHDWTEC 120

Query: 124 PFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCK 183
           PFAHPGEKARRRDP+RYYYSGTACA+FRKGSC KGDACEF+HGVFECWLHPARYRTQPCK
Sbjct: 121 PFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCK 180

Query: 184 DGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGT 243
           DGTSCRRRVCFFAHT EQLRVLPQQSP+ST+SIPSYDGSPLRQA EACAKQ+ YLSSPGT
Sbjct: 181 DGTSCRRRVCFFAHTPEQLRVLPQQSPRSTNSIPSYDGSPLRQAIEACAKQMPYLSSPGT 240

Query: 244 SPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSPSSSPWNVS- 303
           SPP SP IESPPQSPMI+SLNRP               LQ+ K    VQSPSSS WNV  
Sbjct: 241 SPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKEFCKVQSPSSS-WNVQV 300

Query: 304 ---VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLE 350
              VFG P EST  SG  SLPDTPTRP+ R+LD W+LG GE PAMERVESGRDLRAKMLE
Sbjct: 301 GSPVFGSPKESTR-SGLSSLPDTPTRPSIRYLDFWDLGCGEEPAMERVESGRDLRAKMLE 360

[Close]

BLAST of Sed0003406 vs. NCBI nr
Match: XP_011648617.1 (zinc finger CCCH domain-containing protein 20 [Cucumis sativus] >KGN60578.2 hypothetical protein Csa_019260 [Cucumis sativus])

HSP 1 Score: 526.9 bits (1356), Expect = 1.3e-145
Identity = 266/395 (67.34%), Postives = 301/395 (76.20%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSG-------------GGGFSPYAIP 63
           M++G++P R N T+ IP W+F++D   DV S+SPGSG             GGG+SPY + 
Sbjct: 1   MIVGEQPKRTNPTVQIPQWSFLEDSGMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQ 60

Query: 64  DKNALLQQYFLWKEAEMESEFDVSGRE----LDAYSTDKFRMYEFKIKKCTRGRSHDWTE 123
           +  A+L++Y    EAEM+S+ DVSG+E    LDAYS+D+FRMYEFKIKKCTRGRSHDWTE
Sbjct: 61  EALAMLKRYLPSNEAEMDSDIDVSGKEIDSPLDAYSSDQFRMYEFKIKKCTRGRSHDWTE 120

Query: 124 CPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPC 183
           CPFAHPGEKARRRDP+RYYYSGTACA+FRKGSC KGDACEF+HGVFECWLHPARYRTQPC
Sbjct: 121 CPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQPC 180

Query: 184 KDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPG 243
           KDGTSCRRRVCFFAHT EQLRVLPQQSP+STSSIPSYDGSPLRQA EACAKQ+ YLSSPG
Sbjct: 181 KDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPG 240

Query: 244 TSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGKVV-----QSPSSSPWN 303
           TSPP SP IESPPQSP+I+SLNRP               LQ+ K +      S SSS WN
Sbjct: 241 TSPPVSPRIESPPQSPIIKSLNRPHAPSSIKEMVASLRNLQLNKELCKLPSPSSSSSSWN 300

Query: 304 VS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAK 350
           V     VFG P ESTT  G  +LP+T T P  R+LD W+LG+GE PAMERVESGRDLRAK
Sbjct: 301 VQVGSPVFGSPKESTTRPGLSTLPETSTPPGIRYLDFWDLGTGEEPAMERVESGRDLRAK 360

[Close]

BLAST of Sed0003406 vs. NCBI nr
Match: KAA0061507.1 (zinc finger CCCH domain-containing protein 20-like [Cucumis melo var. makuwa])

HSP 1 Score: 526.2 bits (1354), Expect = 2.2e-145
Identity = 270/395 (68.35%), Postives = 303/395 (76.71%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSY-SPGSG-------------GGGFSPYAI 63
           M++G++P R N T+ IPPWTF++D   DV S+ SPGSG             GGG+SPY +
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDAGMDVYSHSSPGSGGSSGSVKCDGCSSGGGYSPYYL 60

Query: 64  PDKNALLQQYFLWKEAEMESEFDVSGREL----DAYSTDKFRMYEFKIKKCTRGRSHDWT 123
            +  A+L++Y    EAEM+S+ DVSG+E+    DAYS+D+FRMYEFKIKKCTRGRSHDWT
Sbjct: 61  QEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWT 120

Query: 124 ECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQP 183
           ECPFAHPGEKARRRDP+RYYYSGTACA+FRKGSC KGDACEF+HGVFECWLHPARYRTQP
Sbjct: 121 ECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQP 180

Query: 184 CKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSP 243
           CKDGTSCRRRVCFFAHT EQLRVLPQQSP+ST+SIPSYDGSPLRQA EACAKQ+ YLSSP
Sbjct: 181 CKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPYLSSP 240

Query: 244 GTSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSP-SSSPWN 303
           GTSPP SP IESPPQSP+I+SLNRP               LQ+ K    VQSP SSS WN
Sbjct: 241 GTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSSSSWN 300

Query: 304 VS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAK 350
           V     VFG P +STT SG  SLP+T T P  R+LD WELG GE PAMERVESGRDLRAK
Sbjct: 301 VQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRDLRAK 360

[Close]

BLAST of Sed0003406 vs. NCBI nr
Match: XP_008459142.1 (PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis melo])

HSP 1 Score: 526.2 bits (1354), Expect = 2.2e-145
Identity = 270/395 (68.35%), Postives = 303/395 (76.71%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSY-SPGSG-------------GGGFSPYAI 63
           M++G++P R N T+ IPPWTF++D   DV S+ SPGSG             GGG+SPY +
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDTGMDVYSHSSPGSGGSSGSVKCDGCSSGGGYSPYYL 60

Query: 64  PDKNALLQQYFLWKEAEMESEFDVSGREL----DAYSTDKFRMYEFKIKKCTRGRSHDWT 123
            +  A+L++Y    EAEM+S+ DVSG+E+    DAYS+D+FRMYEFKIKKCTRGRSHDWT
Sbjct: 61  QEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWT 120

Query: 124 ECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQP 183
           ECPFAHPGEKARRRDP+RYYYSGTACA+FRKGSC KGDACEF+HGVFECWLHPARYRTQP
Sbjct: 121 ECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQP 180

Query: 184 CKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSP 243
           CKDGTSCRRRVCFFAHT EQLRVLPQQSP+ST+SIPSYDGSPLRQA EACAKQ+ YLSSP
Sbjct: 181 CKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPYLSSP 240

Query: 244 GTSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSP-SSSPWN 303
           GTSPP SP IESPPQSP+I+SLNRP               LQ+ K    VQSP SSS WN
Sbjct: 241 GTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSSSSWN 300

Query: 304 VS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAK 350
           V     VFG P +STT SG  SLP+T T P  R+LD WELG GE PAMERVESGRDLRAK
Sbjct: 301 VQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRDLRAK 360

[Close]

BLAST of Sed0003406 vs. NCBI nr
Match: XP_022965788.1 (zinc finger CCCH domain-containing protein 20-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 524.2 bits (1349), Expect = 8.4e-145
Identity = 267/386 (69.17%), Postives = 297/386 (76.94%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSG--------GGGFSPYAIPDKNAL 63
           M+I ++PNRPNQ L +PPW FM+DP SD  S+SPGSG        G G+SP+ + +  A+
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSPGSGVKCDGCSSGDGYSPFYLQEALAM 60

Query: 64  LQQYFLWKEAEMESEFDVSGRE----LDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAH 123
           LQQY   KEAE+ES+ DVSGRE    +D YS+D+FRMYEFKIKKC RGRSHDWTECPFAH
Sbjct: 61  LQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAH 120

Query: 124 PGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTS 183
           PGEKARRRDP++YYYSGTACA+FRKG+C KGDACEF+HGVFECWLHPARYRTQPCKDGTS
Sbjct: 121 PGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTS 180

Query: 184 CRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPF 243
           CRRRVCFFAHT EQLR+LPQQSP+STSSIPSYDGSPLRQA EACAKQ+ YLSS GTS P 
Sbjct: 181 CRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPV 240

Query: 244 SPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSPSSSPWNVS----V 303
           SP IESPPQSPM RSLNRP               LQ+ K    VQSPSS  WNV     V
Sbjct: 241 SPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSL-WNVQVGSPV 300

Query: 304 FGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRK 350
           FG P ES+  SGF SLPDTPT P  R+LD W+LG GE  AM RVESGRDLRAKMLEKLRK
Sbjct: 301 FGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRAKMLEKLRK 360

[Close]

BLAST of Sed0003406 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 6.2e-90
Identity = 191/376 (50.80%), Postives = 239/376 (63.56%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDD-PPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLW 63
           M+IG+     N T+ IPPW   +D   SD+     GS  GG S   + +  A LQ+Y   
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSEDLTVSDIY----GSPDGGSS---MMEALAELQRYLPS 60

Query: 64  KEAEMESEFDVSGRE--LDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRD 123
            E + +S+ D+SG +  +DAY+ D FRMYEFK+++C RGRSHDWTECP+AHPGEKARRRD
Sbjct: 61  NEPDPDSDPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRD 120

Query: 124 PKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFA 183
           P++++YSGTAC EFRKG CK+GDACEFSHGVFECWLHPARYRTQPCKDG +CRRRVCFFA
Sbjct: 121 PRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFA 180

Query: 184 HTAEQLRVLPQQSPKSTSSIPSYD--GSPLRQAFEACAKQISYLSSPGTSPPFSPPIESP 243
           H+ +Q+RVLP QSP     + S+D     +R+AF+        +S    SPP SP  +S 
Sbjct: 181 HSPDQIRVLPNQSP---DRVDSFDVLSPTIRRAFQFS------ISPSSNSPPVSPRGDSD 240

Query: 244 PQSPMI-RSLNRPI----------LQIGKVVQSPSSSPWNV-----SVFGCPDESTTGSG 303
               ++ RSL   +          LQ+ KV  S SSS  N      S FG P  S  G G
Sbjct: 241 SSCSLLSRSLGSNLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPG 300

Query: 304 FCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSV-------- 350
           F SLP TPTRP   F+++WE G  E PAMERVESGR+LRA++ EKL KEN +        
Sbjct: 301 FRSLPTTPTRP--GFMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPD 358

[Close]

BLAST of Sed0003406 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.1e-85
Identity = 187/382 (48.95%), Postives = 236/382 (61.78%), Query Frame = 0


Query: 19  IPPWTFMDDPPSDVCSYSPGSGGGG--FSPYAIPDKNALLQQYFLWKEAEMESEFDVSGR 78
           +PPW+ +     DV     G GGGG   +PY I      L    +   A+ E E      
Sbjct: 11  VPPWSHLPVSGVDVLG---GGGGGGDEMTPYVIAALRDYLPANDVGVGADEEEEAAAMAA 70

Query: 79  ELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYYYSGTACAEFRK 138
            +DAY+ D+FRMYEFK+++C RGRSHDWTECPFAHPGEKARRRDP++Y+YSGTAC +FRK
Sbjct: 71  AVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRK 130

Query: 139 GSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLP--QQSP 198
           G CK+GDACE++HGVFECWLHPARYRTQPCKDGT+CRRRVCFFAHT +QLRVLP  Q SP
Sbjct: 131 GGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSSP 190

Query: 199 KSTSSIP---SYDGSPL-RQAFEACAKQISYLSSPGT---SPPFSPPIESPPQSP----M 258
           +S +S P   SYDGSPL RQAFE+   +    SSP +   SPP SPP ESPP SP     
Sbjct: 191 RSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGAAA 250

Query: 259 IR-----SLNRPI---------LQIGKVVQSPS---SSPWNVSVFGCPDESTTGSGFCSL 318
           IR      +  P+         L++ KV  SPS   S P + +V+G P  +T   G  SL
Sbjct: 251 IRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAAT---GLYSL 310

Query: 319 PDTPTRPTSRF---------LDLWELG-SGEGPAMERVESGRDLRAKMLEKLRKENSVGC 350
           P TP   T+           L+  +LG  G+   ++RVESGR LR K+ E+L ++ ++  
Sbjct: 311 PTTPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRVESGRALREKVFERLSRDGAIS- 370

[Close]

BLAST of Sed0003406 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.8e-82
Identity = 182/373 (48.79%), Postives = 232/373 (62.20%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLWK 63
           M+IG+   R   T+ IPPW  +++  +    +SP       S   + +  A LQ+Y    
Sbjct: 1   MMIGE-TRRTYPTVEIPPWPVLEELTTSE-FFSPVMNSPDCS---MLEALAGLQRYLPSN 60

Query: 64  EAEMESEFDVSGRE--LDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDP 123
           E + ES  D+ G +  +DAYS D FRMY+FK+++C RGRSHDWTECP+AHPGEKARRRDP
Sbjct: 61  EPDPESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDP 120

Query: 124 KRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAH 183
           ++Y+YSGTAC +FRKG CKKGD+CEF+HGVFECWLHPARYRTQPCKDG +C R++CFFAH
Sbjct: 121 RKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAH 180

Query: 184 TAEQLRVLPQQSPKSTSSIPSYD-GSPLRQAFEACAKQISYLSSPGTSPPFSPPIESPPQ 243
           + +QLR L  +SP     + S+D  SP+R    A A Q+S +S    SPP SP  +S   
Sbjct: 181 SPDQLRFLHTRSP---DRVDSFDVSSPIR----ARAFQLS-ISPVSGSPPMSPRADS-ES 240

Query: 244 SPMIRSLNRPI--------------LQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSL 303
           SPM +SL+R +              LQ   V   P ++P  +  FG P  S  G GF SL
Sbjct: 241 SPMTQSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNP--LFGFGSPRGSILGPGFQSL 300

Query: 304 PDTPTRPTSRFLDLWELGSGEGPAMER-VESGRDLRAKMLEKLRKENSV---------GC 350
           P TPTRP +  LD+WE G  E P MER VESGR+LR KM EKL KEN +           
Sbjct: 301 PTTPTRPGN--LDIWEYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNL 355

[Close]

BLAST of Sed0003406 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 8.7e-76
Identity = 185/402 (46.02%), Postives = 221/402 (54.98%), Query Frame = 0


Query: 20  PPW-TFMDDPPSDVCSYSPGSGGGG------FSPYAIPDKNALLQQYFLWKE---AEMES 79
           PPW   +  P S V       GGGG       +PY + D    L+ Y    E   AE E 
Sbjct: 11  PPWQQHVASPVSGV------EGGGGRESEVVAAPYHLLD---TLRHYLPSNEAAAAEDEE 70

Query: 80  EFDVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYYYSGT 139
           E       +DAY+ D+FRMYEFK+++C RGRSHDWTECPFAHPGEKARRRDP+RY YSGT
Sbjct: 71  EAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGT 130

Query: 140 ACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVL 199
           AC +FRKG CK+GDACEF+HGVFECWLHPARYRTQPCKDGT+CRRRVCFFAHT +QLRVL
Sbjct: 131 ACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVL 190

Query: 200 PQQSPKSTSS----------------IPSYDGSPL-RQAFEACAKQISYLSSPGT---SP 259
           P    + ++S                  SYDGSPL RQAFE+   +    SSP +   SP
Sbjct: 191 PPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSP 250

Query: 260 PFSPPIESPPQSPMIRSLNR---------PILQIGKVVQ-----SPSSSPWNVSV----- 319
           P SPP ESPP SP      R         P+  +   ++     SP S+P   S      
Sbjct: 251 PRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGY 310

Query: 320 -FGCPDE--STTGSGFCSLPDTPTR-------------PTSRFLDLWELGSGEGPAMERV 350
            +G P    +   +   SLP TPTR              T   LDL  +   E   MERV
Sbjct: 311 QYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEPLDLGLI--EEEQPMERV 370

[Close]

BLAST of Sed0003406 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 8.1e-74
Identity = 162/344 (47.09%), Postives = 203/344 (59.01%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGG-------GFSPYAIPDKNALL 63
           M+IG+  NRP+ T+ IP W  ++DP + +   SP S            SP    D  A L
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATIS--SPFSSVNLNSVNDYPHSPSPYLDSFASL 60

Query: 64  QQYFLWKEAEMESEF---DVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPG 123
            +Y    E   +S+    D S    D++S+D+FR+YEFKI++C RGRSHDWTECPFAHPG
Sbjct: 61  FRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPG 120

Query: 124 EKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCR 183
           EKARRRDP++++YSGTAC EFRKGSC++GD+CEFSHGVFECWLHP+RYRTQPCKDGTSCR
Sbjct: 121 EKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCR 180

Query: 184 RRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPFSP 243
           RR+CFFAHT EQLRVLP               SP               +S   SP FSP
Sbjct: 181 RRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP---------------TSILVSPSFSP 240

Query: 244 PIESPPQSPMIRSLNRPILQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSLPDTPTRP 303
           P ESPP SP   S    I  + K+  +     W+      P  S     F S      RP
Sbjct: 241 PSESPPLSP---STGELIASMRKMQLNGGGCSWS-----SPMRSAVRLPFSS----SLRP 300

Query: 304 --TSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSVG 336
              + +  + E    E PAME VESG++LRA+M  +L +ENS+G
Sbjct: 301 IQAATWPRIREFEIEEAPAMEFVESGKELRAEMYARLSRENSLG 315

[Close]

BLAST of Sed0003406 vs. ExPASy TrEMBL
Match: A0A5A7V3Q9 (Zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00680 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.1e-145
Identity = 270/395 (68.35%), Postives = 303/395 (76.71%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSY-SPGSG-------------GGGFSPYAI 63
           M++G++P R N T+ IPPWTF++D   DV S+ SPGSG             GGG+SPY +
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDAGMDVYSHSSPGSGGSSGSVKCDGCSSGGGYSPYYL 60

Query: 64  PDKNALLQQYFLWKEAEMESEFDVSGREL----DAYSTDKFRMYEFKIKKCTRGRSHDWT 123
            +  A+L++Y    EAEM+S+ DVSG+E+    DAYS+D+FRMYEFKIKKCTRGRSHDWT
Sbjct: 61  QEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWT 120

Query: 124 ECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQP 183
           ECPFAHPGEKARRRDP+RYYYSGTACA+FRKGSC KGDACEF+HGVFECWLHPARYRTQP
Sbjct: 121 ECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQP 180

Query: 184 CKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSP 243
           CKDGTSCRRRVCFFAHT EQLRVLPQQSP+ST+SIPSYDGSPLRQA EACAKQ+ YLSSP
Sbjct: 181 CKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPYLSSP 240

Query: 244 GTSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSP-SSSPWN 303
           GTSPP SP IESPPQSP+I+SLNRP               LQ+ K    VQSP SSS WN
Sbjct: 241 GTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSSSSWN 300

Query: 304 VS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAK 350
           V     VFG P +STT SG  SLP+T T P  R+LD WELG GE PAMERVESGRDLRAK
Sbjct: 301 VQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRDLRAK 360

[Close]

BLAST of Sed0003406 vs. ExPASy TrEMBL
Match: A0A1S3C9K7 (zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103498342 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 1.1e-145
Identity = 270/395 (68.35%), Postives = 303/395 (76.71%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSY-SPGSG-------------GGGFSPYAI 63
           M++G++P R N T+ IPPWTF++D   DV S+ SPGSG             GGG+SPY +
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDTGMDVYSHSSPGSGGSSGSVKCDGCSSGGGYSPYYL 60

Query: 64  PDKNALLQQYFLWKEAEMESEFDVSGREL----DAYSTDKFRMYEFKIKKCTRGRSHDWT 123
            +  A+L++Y    EAEM+S+ DVSG+E+    DAYS+D+FRMYEFKIKKCTRGRSHDWT
Sbjct: 61  QEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWT 120

Query: 124 ECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQP 183
           ECPFAHPGEKARRRDP+RYYYSGTACA+FRKGSC KGDACEF+HGVFECWLHPARYRTQP
Sbjct: 121 ECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARYRTQP 180

Query: 184 CKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSP 243
           CKDGTSCRRRVCFFAHT EQLRVLPQQSP+ST+SIPSYDGSPLRQA EACAKQ+ YLSSP
Sbjct: 181 CKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPYLSSP 240

Query: 244 GTSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSP-SSSPWN 303
           GTSPP SP IESPPQSP+I+SLNRP               LQ+ K    VQSP SSS WN
Sbjct: 241 GTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSSSSWN 300

Query: 304 VS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAK 350
           V     VFG P +STT SG  SLP+T T P  R+LD WELG GE PAMERVESGRDLRAK
Sbjct: 301 VQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRDLRAK 360

[Close]

BLAST of Sed0003406 vs. ExPASy TrEMBL
Match: A0A6J1HQ03 (zinc finger CCCH domain-containing protein 20-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465573 PE=4 SV=1)

HSP 1 Score: 524.2 bits (1349), Expect = 4.1e-145
Identity = 267/386 (69.17%), Postives = 297/386 (76.94%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSG--------GGGFSPYAIPDKNAL 63
           M+I ++PNRPNQ L +PPW FM+DP SD  S+SPGSG        G G+SP+ + +  A+
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSPGSGVKCDGCSSGDGYSPFYLQEALAM 60

Query: 64  LQQYFLWKEAEMESEFDVSGRE----LDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAH 123
           LQQY   KEAE+ES+ DVSGRE    +D YS+D+FRMYEFKIKKC RGRSHDWTECPFAH
Sbjct: 61  LQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAH 120

Query: 124 PGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTS 183
           PGEKARRRDP++YYYSGTACA+FRKG+C KGDACEF+HGVFECWLHPARYRTQPCKDGTS
Sbjct: 121 PGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTS 180

Query: 184 CRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPF 243
           CRRRVCFFAHT EQLR+LPQQSP+STSSIPSYDGSPLRQA EACAKQ+ YLSS GTS P 
Sbjct: 181 CRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPV 240

Query: 244 SPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSPSSSPWNVS----V 303
           SP IESPPQSPM RSLNRP               LQ+ K    VQSPSS  WNV     V
Sbjct: 241 SPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSL-WNVQVGSPV 300

Query: 304 FGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRK 350
           FG P ES+  SGF SLPDTPT P  R+LD W+LG GE  AM RVESGRDLRAKMLEKLRK
Sbjct: 301 FGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRAKMLEKLRK 360

[Close]

BLAST of Sed0003406 vs. ExPASy TrEMBL
Match: A0A6J1FG51 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111443876 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 2.0e-144
Identity = 267/395 (67.59%), Postives = 297/395 (75.19%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGG-----------------GFSP 63
           M+I ++PNRPNQ L +PPWTFM+DP SD  S+SPGSGG                  G+SP
Sbjct: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP 60

Query: 64  YAIPDKNALLQQYFLWKEAEMESEFDVSGRE----LDAYSTDKFRMYEFKIKKCTRGRSH 123
           + + +  A+LQQY   KEAE+ES+ D SGRE    +D YS+D+FRMYEFKIKKC RGRSH
Sbjct: 61  FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH 120

Query: 124 DWTECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYR 183
           DWTECPFAHPGEKARRRDP++YYYSGTACA+FRKG+C KGDACEF+HGVFECWLHPARYR
Sbjct: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR 180

Query: 184 TQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYL 243
           TQPCKDGTSCRRRVCFFAHT EQLR+LPQQSP+STSSIPSYDGSPLRQA EACAKQ+ YL
Sbjct: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL 240

Query: 244 SSPGTSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSPSSSP 303
           SS GTS P SP IESPPQSPM RSLNRP               LQ+ K    VQSPSS  
Sbjct: 241 SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSL- 300

Query: 304 WNVS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLR 350
           WNV     VFG P ES+  SGF SLPDTPT P  R+LD W+LG GE  AM RVESGRDLR
Sbjct: 301 WNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLR 360

[Close]

BLAST of Sed0003406 vs. ExPASy TrEMBL
Match: A0A6J1HL92 (zinc finger CCCH domain-containing protein 20-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465573 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 5.9e-144
Identity = 267/397 (67.25%), Postives = 297/397 (74.81%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGG-------------------GF 63
           M+I ++PNRPNQ L +PPW FM+DP SD  S+SPGSGG                    G+
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSPGSGGSGSGSGSGSGVKCDGCSSGDGY 60

Query: 64  SPYAIPDKNALLQQYFLWKEAEMESEFDVSGRE----LDAYSTDKFRMYEFKIKKCTRGR 123
           SP+ + +  A+LQQY   KEAE+ES+ DVSGRE    +D YS+D+FRMYEFKIKKC RGR
Sbjct: 61  SPFYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGR 120

Query: 124 SHDWTECPFAHPGEKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPAR 183
           SHDWTECPFAHPGEKARRRDP++YYYSGTACA+FRKG+C KGDACEF+HGVFECWLHPAR
Sbjct: 121 SHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPAR 180

Query: 184 YRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQIS 243
           YRTQPCKDGTSCRRRVCFFAHT EQLR+LPQQSP+STSSIPSYDGSPLRQA EACAKQ+ 
Sbjct: 181 YRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMP 240

Query: 244 YLSSPGTSPPFSPPIESPPQSPMIRSLNRP--------------ILQIGK---VVQSPSS 303
           YLSS GTS P SP IESPPQSPM RSLNRP               LQ+ K    VQSPSS
Sbjct: 241 YLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSS 300

Query: 304 SPWNVS----VFGCPDESTTGSGFCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRD 350
             WNV     VFG P ES+  SGF SLPDTPT P  R+LD W+LG GE  AM RVESGRD
Sbjct: 301 L-WNVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRD 360

[Close]

BLAST of Sed0003406 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 332.4 bits (851), Expect = 4.4e-91
Identity = 191/376 (50.80%), Postives = 239/376 (63.56%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDD-PPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLW 63
           M+IG+     N T+ IPPW   +D   SD+     GS  GG S   + +  A LQ+Y   
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSEDLTVSDIY----GSPDGGSS---MMEALAELQRYLPS 60

Query: 64  KEAEMESEFDVSGRE--LDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRD 123
            E + +S+ D+SG +  +DAY+ D FRMYEFK+++C RGRSHDWTECP+AHPGEKARRRD
Sbjct: 61  NEPDPDSDPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRD 120

Query: 124 PKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFA 183
           P++++YSGTAC EFRKG CK+GDACEFSHGVFECWLHPARYRTQPCKDG +CRRRVCFFA
Sbjct: 121 PRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFA 180

Query: 184 HTAEQLRVLPQQSPKSTSSIPSYD--GSPLRQAFEACAKQISYLSSPGTSPPFSPPIESP 243
           H+ +Q+RVLP QSP     + S+D     +R+AF+        +S    SPP SP  +S 
Sbjct: 181 HSPDQIRVLPNQSP---DRVDSFDVLSPTIRRAFQFS------ISPSSNSPPVSPRGDSD 240

Query: 244 PQSPMI-RSLNRPI----------LQIGKVVQSPSSSPWNV-----SVFGCPDESTTGSG 303
               ++ RSL   +          LQ+ KV  S SSS  N      S FG P  S  G G
Sbjct: 241 SSCSLLSRSLGSNLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPG 300

Query: 304 FCSLPDTPTRPTSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSV-------- 350
           F SLP TPTRP   F+++WE G  E PAMERVESGR+LRA++ EKL KEN +        
Sbjct: 301 FRSLPTTPTRP--GFMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPD 358

[Close]

BLAST of Sed0003406 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-83
Identity = 182/373 (48.79%), Postives = 232/373 (62.20%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGGGFSPYAIPDKNALLQQYFLWK 63
           M+IG+   R   T+ IPPW  +++  +    +SP       S   + +  A LQ+Y    
Sbjct: 1   MMIGE-TRRTYPTVEIPPWPVLEELTTSE-FFSPVMNSPDCS---MLEALAGLQRYLPSN 60

Query: 64  EAEMESEFDVSGRE--LDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDP 123
           E + ES  D+ G +  +DAYS D FRMY+FK+++C RGRSHDWTECP+AHPGEKARRRDP
Sbjct: 61  EPDPESYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDP 120

Query: 124 KRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAH 183
           ++Y+YSGTAC +FRKG CKKGD+CEF+HGVFECWLHPARYRTQPCKDG +C R++CFFAH
Sbjct: 121 RKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAH 180

Query: 184 TAEQLRVLPQQSPKSTSSIPSYD-GSPLRQAFEACAKQISYLSSPGTSPPFSPPIESPPQ 243
           + +QLR L  +SP     + S+D  SP+R    A A Q+S +S    SPP SP  +S   
Sbjct: 181 SPDQLRFLHTRSP---DRVDSFDVSSPIR----ARAFQLS-ISPVSGSPPMSPRADS-ES 240

Query: 244 SPMIRSLNRPI--------------LQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSL 303
           SPM +SL+R +              LQ   V   P ++P  +  FG P  S  G GF SL
Sbjct: 241 SPMTQSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNP--LFGFGSPRGSILGPGFQSL 300

Query: 304 PDTPTRPTSRFLDLWELGSGEGPAMER-VESGRDLRAKMLEKLRKENSV---------GC 350
           P TPTRP +  LD+WE G  E P MER VESGR+LR KM EKL KEN +           
Sbjct: 301 PTTPTRPGN--LDIWEYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNL 355

[Close]

BLAST of Sed0003406 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 278.9 bits (712), Expect = 5.8e-75
Identity = 162/344 (47.09%), Postives = 203/344 (59.01%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGG-------GFSPYAIPDKNALL 63
           M+IG+  NRP+ T+ IP W  ++DP + +   SP S            SP    D  A L
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATIS--SPFSSVNLNSVNDYPHSPSPYLDSFASL 60

Query: 64  QQYFLWKEAEMESEF---DVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPG 123
            +Y    E   +S+    D S    D++S+D+FR+YEFKI++C RGRSHDWTECPFAHPG
Sbjct: 61  FRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPG 120

Query: 124 EKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCR 183
           EKARRRDP++++YSGTAC EFRKGSC++GD+CEFSHGVFECWLHP+RYRTQPCKDGTSCR
Sbjct: 121 EKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCR 180

Query: 184 RRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPFSP 243
           RR+CFFAHT EQLRVLP               SP               +S   SP FSP
Sbjct: 181 RRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP---------------TSILVSPSFSP 240

Query: 244 PIESPPQSPMIRSLNRPILQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSLPDTPTRP 303
           P ESPP SP   S    I  + K+  +     W+      P  S     F S      RP
Sbjct: 241 PSESPPLSP---STGELIASMRKMQLNGGGCSWS-----SPMRSAVRLPFSS----SLRP 300

Query: 304 --TSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSVG 336
              + +  + E    E PAME VESG++LRA+M  +L +ENS+G
Sbjct: 301 IQAATWPRIREFEIEEAPAMEFVESGKELRAEMYARLSRENSLG 315

[Close]

BLAST of Sed0003406 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 278.9 bits (712), Expect = 5.8e-75
Identity = 162/344 (47.09%), Postives = 203/344 (59.01%), Query Frame = 0


Query: 4   MVIGDKPNRPNQTLLIPPWTFMDDPPSDVCSYSPGSGGG-------GFSPYAIPDKNALL 63
           M+IG+  NRP+ T+ IP W  ++DP + +   SP S            SP    D  A L
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATIS--SPFSSVNLNSVNDYPHSPSPYLDSFASL 60

Query: 64  QQYFLWKEAEMESEF---DVSGRELDAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPG 123
            +Y    E   +S+    D S    D++S+D+FR+YEFKI++C RGRSHDWTECPFAHPG
Sbjct: 61  FRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPG 120

Query: 124 EKARRRDPKRYYYSGTACAEFRKGSCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCR 183
           EKARRRDP++++YSGTAC EFRKGSC++GD+CEFSHGVFECWLHP+RYRTQPCKDGTSCR
Sbjct: 121 EKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCR 180

Query: 184 RRVCFFAHTAEQLRVLPQQSPKSTSSIPSYDGSPLRQAFEACAKQISYLSSPGTSPPFSP 243
           RR+CFFAHT EQLRVLP               SP               +S   SP FSP
Sbjct: 181 RRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP---------------TSILVSPSFSP 240

Query: 244 PIESPPQSPMIRSLNRPILQIGKVVQSPSSSPWNVSVFGCPDESTTGSGFCSLPDTPTRP 303
           P ESPP SP   S    I  + K+  +     W+      P  S     F S      RP
Sbjct: 241 PSESPPLSP---STGELIASMRKMQLNGGGCSWS-----SPMRSAVRLPFSS----SLRP 300

Query: 304 --TSRFLDLWELGSGEGPAMERVESGRDLRAKMLEKLRKENSVG 336
              + +  + E    E PAME VESG++LRA+M  +L +ENS+G
Sbjct: 301 IQAATWPRIREFEIEEAPAMEFVESGKELRAEMYARLSRENSLG 315

[Close]

BLAST of Sed0003406 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.4e-52
Identity = 96/167 (57.49%), Postives = 116/167 (69.46%), Query Frame = 0


Query: 79  DAYSTDKFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPKRYYYSGTACAEFRK-G 138
           D Y++D FRM+EFKI++CTR RSHDWT+CPFAHPGEKARRRDP+R+ YSG  C EFR+ G
Sbjct: 76  DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query: 139 SCKKGDACEFSHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTAEQLRVLPQQSPKST 198
            C +GD CEF+HGVFECWLHP RYRT+ CKDG  C+R+VCFFAH+  QLRVLP ++    
Sbjct: 136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGV 195

Query: 199 SSIPS----------YDGSPLRQAFEACAKQISYLS-SPGTSPPFSP 234
           S+ PS             SP           +S+LS SP  SPP SP
Sbjct: 196 SASPSPAAKNPCCLFCSSSPT----STLLGNLSHLSRSPSLSPPMSP 238

The following BLAST results are available for this feature:

BLAST of Sed0003406 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890937.1	1.3e-150	70.74	zinc finger CCCH domain-containing protein 20-like [Benincasa hispida]	[more]
XP_011648617.1	1.3e-145	67.34	zinc finger CCCH domain-containing protein 20 [Cucumis sativus] >KGN60578.2 hypo...	[more]
KAA0061507.1	2.2e-145	68.35	zinc finger CCCH domain-containing protein 20-like [Cucumis melo var. makuwa]	[more]
XP_008459142.1	2.2e-145	68.35	PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis melo]	[more]
XP_022965788.1	8.4e-145	69.17	zinc finger CCCH domain-containing protein 20-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0003406 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	6.2e-90	50.80	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	2.1e-85	48.95	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q9M0G2	2.8e-82	48.79	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	8.7e-76	46.02	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]
O82307	8.1e-74	47.09	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Sed0003406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3Q9	1.1e-145	68.35	Zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C9K7	1.1e-145	68.35	zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1HQ03	4.1e-145	69.17	zinc finger CCCH domain-containing protein 20-like isoform X2 OS=Cucurbita maxim...	[more]
A0A6J1FG51	2.0e-144	67.59	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HL92	5.9e-144	67.25	zinc finger CCCH domain-containing protein 20-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of Sed0003406 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	4.4e-91	50.80	CCCH-type zinc finger family protein	[more]
AT4G29190.1	2.0e-83	48.79	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	5.8e-75	47.09	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	5.8e-75	47.09	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	1.4e-52	57.49	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 125..151 e-value: 0.0028 score: 26.9 coord: 160..183 e-value: 22.0 score: 5.5
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 130..150 e-value: 6.7E-5 score: 22.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 125..152 score: 12.333148
None	No IPR available	GENE3D	4.10.1000.10		coord: 122..196 e-value: 3.1E-8 score: 35.3
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 12..349
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 12..349

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003406.1	Sed0003406.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding