Sed0003380 (gene) Chayote v1

Overview


Name	Sed0003380
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Phytocyanin domain-containing protein
Location	LG06: 44551239 .. 44552797 (-)
RNA-Seq Expression	Sed0003380
Synteny	Sed0003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCATTAAACAACAAAACAAATTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTGAATCAGACAAATCCACCATAAAAAGCATAAAATTCAAACCCCATAACTATGAACTAAGCTGAATGAAGTTGCAGAAATCAGATATTTTTATTTAATTGATTAATAATGGAGCTTAGCCCCACCCAGCATTGGTGCTTCAATTATGCCCCCATTTATTGGGCCCTTCAAACCCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACCCCCCAAATTTCTAGGGCAGAACAAACATTTCCAAAGCTCCGCCACAATGCCGCCACTCGCCGCCGTCGTCCTTTTCCTCTGCGCCGCCGCCGCCTCCGTCTCCGCCACCGACCACATCGTCGGCGCTAACCGGGGCTGGAACCCCGGCATCAATTACACTCTCTGGGCTAACAACCATACCTTCTTCGTTGGCGATCTCATTTGTAAGTTCCAACTCTTCTCCCTCTTTCTCAAGTTGCAAATTTATGGGATCTGATTTGGGGTTTGATTTCTTTTGGATTTGGAGCTGATCTGAGCATGTTTAGTTCTAAATTCTCACTTATGTTGTGTTTTCTTTACTTGTCTTTGTAGTTTTAGTGTTTTGGGACCTTGTTCTTTTTGGATCTTCTTCCACATTACATTAGTATTGGAGAGTTTAACTCAACCAATATGATCTTGAGATCTATTGATTCTAACTCTCCATTTCCACTATTGGAGAGTTCTCTTCCACTTTGCTTAGTAAAATTAGTATTATCTTATAGGAATAGTTGAAGTGCGTAGAAGCTAGCTCAAACAATCACAGATAGTTGAAGTGCATGTGTATTACGATCTACTAGCATTATATCGGGATCCTGACACCTTGAAAGCGAACCAAATATTTGGCAGCATTTAGGTATCAGAAGAACCAATACAATGTGTTTGAGGTGAACCAAACAAGCTATGGCAATTGCACTACAGAAGGAGCTCTTGGTAATTGGAGCAGTGGCAAGGACTTCATCCCCCTCAACATTGCCCAAAGGTACTACTTCATTGGTGGCAATGGACAGTGTTTCAATGGCATGAAGGTCACCATTCTTGTCCATCCTCTTCCTCCTCCTCCATCTTCTCCCATTTCCACCAACCATTCCTCGCCCTCCTCCGCCACACCCCGAGAAGGGTCTCGACAATGGAAGGTTCGGGCTCTGCTCATCTCGCTGGCTTTGATTTGGTTTGGATCTGACTGGATTTAATTGAGCCATGGCTGGACTTTGTTGGTAGTTTAGTGTTGGATGTGTGTGTTTTTTGAGATCTCTAGATTTGAAAACAATTTGGTTGGCAGAAAGTGTCTCCCAATTCTTAAACTTGTGGGATGATTAGGAGGGCATATTGTTTGATTGCTTCGATTTGTGTGGACTGGTTTTGAATGTTTTGGATTGTTCTAATTGTAATGACAATTGCATTCATGTTGTTTAATTTTTTTTTAGTAGGACGTTTAAGCATTTCGAACATGAAAGAATGAGCAAATATCGGTAAGAAAGAACTCACTTTCATGTGT

mRNA sequence

AAATCATTAAACAACAAAACAAATTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATTGAATCAGACAAATCCACCATAAAAAGCATAAAATTCAAACCCCATAACTATGAACTAAGCTGAATGAAGTTGCAGAAATCAGATATTTTTATTTAATTGATTAATAATGGAGCTTAGCCCCACCCAGCATTGGTGCTTCAATTATGCCCCCATTTATTGGGCCCTTCAAACCCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACCCCCCAAATTTCTAGGGCAGAACAAACATTTCCAAAGCTCCGCCACAATGCCGCCACTCGCCGCCGTCGTCCTTTTCCTCTGCGCCGCCGCCGCCTCCGTCTCCGCCACCGACCACATCGTCGGCGCTAACCGGGGCTGGAACCCCGGCATCAATTACACTCTCTGGGCTAACAACCATACCTTCTTCGTTGGCGATCTCATTTCATTTAGGTATCAGAAGAACCAATACAATGTGTTTGAGGTGAACCAAACAAGCTATGGCAATTGCACTACAGAAGGAGCTCTTGGTAATTGGAGCAGTGGCAAGGACTTCATCCCCCTCAACATTGCCCAAAGGTACTACTTCATTGGTGGCAATGGACAGTGTTTCAATGGCATGAAGGTCACCATTCTTGTCCATCCTCTTCCTCCTCCTCCATCTTCTCCCATTTCCACCAACCATTCCTCGCCCTCCTCCGCCACACCCCGAGAAGGGTCTCGACAATGGAAGGTTCGGGCTCTGCTCATCTCGCTGGCTTTGATTTGGTTTGGATCTGACTGGATTTAATTGAGCCATGGCTGGACTTTGTTGGTAGTTTAGTGTTGGATGTGTGTGTTTTTTGAGATCTCTAGATTTGAAAACAATTTGGTTGGCAGAAAGTGTCTCCCAATTCTTAAACTTGTGGGATGATTAGGAGGGCATATTGTTTGATTGCTTCGATTTGTGTGGACTGGTTTTGAATGTTTTGGATTGTTCTAATTGTAATGACAATTGCATTCATGTTGTTTAATTTTTTTTTAGTAGGACGTTTAAGCATTTCGAACATGAAAGAATGAGCAAATATCGGTAAGAAAGAACTCACTTTCATGTGT

Coding sequence (CDS)

ATGGAGCTTAGCCCCACCCAGCATTGGTGCTTCAATTATGCCCCCATTTATTGGGCCCTTCAAACCCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACCCCCCAAATTTCTAGGGCAGAACAAACATTTCCAAAGCTCCGCCACAATGCCGCCACTCGCCGCCGTCGTCCTTTTCCTCTGCGCCGCCGCCGCCTCCGTCTCCGCCACCGACCACATCGTCGGCGCTAACCGGGGCTGGAACCCCGGCATCAATTACACTCTCTGGGCTAACAACCATACCTTCTTCGTTGGCGATCTCATTTCATTTAGGTATCAGAAGAACCAATACAATGTGTTTGAGGTGAACCAAACAAGCTATGGCAATTGCACTACAGAAGGAGCTCTTGGTAATTGGAGCAGTGGCAAGGACTTCATCCCCCTCAACATTGCCCAAAGGTACTACTTCATTGGTGGCAATGGACAGTGTTTCAATGGCATGAAGGTCACCATTCTTGTCCATCCTCTTCCTCCTCCTCCATCTTCTCCCATTTCCACCAACCATTCCTCGCCCTCCTCCGCCACACCCCGAGAAGGGTCTCGACAATGGAAGGTTCGGGCTCTGCTCATCTCGCTGGCTTTGATTTGGTTTGGATCTGACTGGATTTAA

Protein sequence

MELSPTQHWCFNYAPIYWALQTLLSLSLSLSKPPKFLGQNKHFQSSATMPPLAAVVLFLCAAAASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI

Homology

[Close]

BLAST of Sed0003380 vs. NCBI nr
Match: KAG7018121.1 (Lamin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-77
Identity = 143/167 (85.63%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 50  PPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 109
           P L A  L LC AA+   VSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN
Sbjct: 5   PQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 64

Query: 110 QYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHP 169
           QYNVFEVNQ+ Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHP
Sbjct: 65  QYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 124

Query: 170 LPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           LPPPPSSP+++  SSPSSATPR GSRQWK+RALL+SLALIWFGSDWI
Sbjct: 125 LPPPPSSPLASKDSSPSSATPRTGSRQWKIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Sed0003380 vs. NCBI nr
Match: XP_023526524.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 4.6e-77
Identity = 142/167 (85.03%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 50  PPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 109
           P L A  L LC AA+   VSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN
Sbjct: 5   PHLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 64

Query: 110 QYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHP 169
           QYNVFEVNQ+ Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHP
Sbjct: 65  QYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 124

Query: 170 LPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           LPPPPSSP+++  SSPSSATPR GSRQW++RALL+SLALIWFGSDWI
Sbjct: 125 LPPPPSSPLASKDSSPSSATPRTGSRQWQIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Sed0003380 vs. NCBI nr
Match: XP_038903873.1 (lamin-like protein [Benincasa hispida])

HSP 1 Score: 297.7 bits (761), Expect = 7.8e-77
Identity = 142/170 (83.53%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 47  ATMPPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRY 106
           A  P L A  L LCAA +   VSATDHIVGANRGWNPGINYTLWANNHTF+VGDLISFRY
Sbjct: 3   AASPHLLAFFLLLCAAVSVFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFRY 62

Query: 107 QKNQYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTIL 166
           QKNQYNVFEVNQ+ Y NCTTEGALGNWSSGKDFIPL  AQRYYFI GNGQCFNGMKVT+L
Sbjct: 63  QKNQYNVFEVNQSGYDNCTTEGALGNWSSGKDFIPLQKAQRYYFICGNGQCFNGMKVTVL 122

Query: 167 VHPLPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           VHPLPPPPSSP+ T HSSPSSAT  EGS+QW++RALLISLALIWFGSDWI
Sbjct: 123 VHPLPPPPSSPLGTEHSSPSSATAPEGSQQWRIRALLISLALIWFGSDWI 172

[Close]

BLAST of Sed0003380 vs. NCBI nr
Match: XP_022934432.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 297.4 bits (760), Expect = 1.0e-76
Identity = 141/167 (84.43%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 50  PPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 109
           P L A  L LC AA+   VSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN
Sbjct: 5   PQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 64

Query: 110 QYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHP 169
           QYNVFEVNQ+ Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHP
Sbjct: 65  QYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 124

Query: 170 LPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           LPPPPSSP+++  SSPSSATPR GSRQW++RAL +SLALIWFGSDWI
Sbjct: 125 LPPPPSSPLASKDSSPSSATPRTGSRQWQIRALFVSLALIWFGSDWI 171

[Close]

BLAST of Sed0003380 vs. NCBI nr
Match: XP_022983448.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 296.6 bits (758), Expect = 1.7e-76
Identity = 139/160 (86.88%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 57  LFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEV 116
           L LC AA+   VSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEV
Sbjct: 12  LLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEV 71

Query: 117 NQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLPPPPSS 176
           NQ+ Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHPLPPPPSS
Sbjct: 72  NQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHPLPPPPSS 131

Query: 177 PISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           P+++ +SSPSSATPR GSRQW++RALL+SLALIWFGSDWI
Sbjct: 132 PLASKNSSPSSATPRTGSRQWQIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Sed0003380 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 53  AAVVLFLCAA-AASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNV 112
           A V+ FL AA    V+A  + VG N+ WNP INYT+WA    F++GD + F + +NQ+N+
Sbjct: 10  AVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNI 69

Query: 113 FEVNQTSYGNCTTEGALGNWS--SGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLP 172
            EVN+T Y  C  +  + NW+  +G+D + LN  + YY + G G C+ GMK+++ V  LP
Sbjct: 70  LEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLP 129

Query: 173 PPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIW 209
           PPP S    N  S S  T   G  Q+ +   L +   +W
Sbjct: 130 PPPKSAPVKNIGSVSMVT---GLAQFMIPVSLFAFPAMW 165

[Close]

BLAST of Sed0003380 vs. ExPASy Swiss-Prot
Match: A0A072U307 (Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 48/151 (31.79%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 62  AAASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEVNQTSYGN 121
           ++ +++ATD+IVG ++GW    +YT WA +  F VGD + F Y  +++NVF+VN T + +
Sbjct: 18  SSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPSRHNVFKVNGTLFQS 77

Query: 122 CTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNG----MKVTILVHPLPPPPSSPIS 181
           CT        S+GKD I L    R +++ G     +     + +T+L    P P   P S
Sbjct: 78  CTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAEGAPAPSPPPSS 137

Query: 182 TNHSSPSSATPREGSRQWKVRALLISLALIW 209
             HS  SS           V A+++++A+I+
Sbjct: 138 DAHSVVSSLF-------GVVMAIMVAIAVIF 161

[Close]

BLAST of Sed0003380 vs. ExPASy Swiss-Prot
Match: G7L0H3 (Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-14
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 0


Query: 55  VVLFLCAAAASVS----ATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYN 114
           VVL L  +   +S    ATDHIVG ++GW    +YT WA +  F VGD + F Y   ++N
Sbjct: 6   VVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPARHN 65

Query: 115 VFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNG----MKVTILVH 174
           VF+VN T + +CT        S+GKD I L    R +++ G     +     + +T+L  
Sbjct: 66  VFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLAE 125

Query: 175 PLPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIW 209
             P P   P S  HS  SS           V A+++++A+I+
Sbjct: 126 GAPAPSPPPSSDAHSVVSSLF-------GVVMAIMVAIAVIF 160

[Close]

BLAST of Sed0003380 vs. ExPASy Swiss-Prot
Match: Q41001 (Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.3e-13
Identity = 52/141 (36.88%), Postives = 74/141 (52.48%), Query Frame = 0


Query: 53  AAVVLFLCA---AAASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQY 112
           A V+ FL A    A    AT + VG   GW  G +Y+ WA++ TF VGD + F Y    +
Sbjct: 6   ALVLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAH 65

Query: 113 NVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFI-GGNGQCFNGMKVTILVH-- 172
            V EV ++ Y +CT+  ++   S+G   IPL  A ++YFI G  G    GMK++I V   
Sbjct: 66  TVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKVKAS 125

Query: 173 --PLPPPPSSPISTNHSSPSS 186
                 P ++P S+   SPSS
Sbjct: 126 SGSSAAPSATPSSSGKGSPSS 146

[Close]

BLAST of Sed0003380 vs. ExPASy Swiss-Prot
Match: A0A0M4FTF3 (Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 0


Query: 61  AAAASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEVNQTSYG 120
           A A+    T++ VG ++GW   ++Y  WA   TF VGD + F+Y K  +NVF+VNQT + 
Sbjct: 108 APASPAPQTEYWVGDDKGWTIDVDYQAWAKGKTFKVGDTLVFKYTKGHHNVFKVNQTGFQ 167

Query: 121 NCTTEGALGNWSSGKDFIPLNI-AQRYYFIGGNGQCF-NGMKVTILVHPLP---PPPSSP 180
           NC         +SG D I L    +++Y  G    C  +  K+ I V   P   PP  +P
Sbjct: 168 NCIAPPPSEGLTSGHDVITLAAPGKKWYICGFPTHCSEHKQKLAITVEGAPAQTPPVWAP 227

Query: 181 ISTNHSSPSSATPRE 191
                 +P+  TP++
Sbjct: 228 ------APAPGTPKK 236

[Close]

BLAST of Sed0003380 vs. ExPASy TrEMBL
Match: A0A6J1F2R0 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441613 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.9e-77
Identity = 141/167 (84.43%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 50  PPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 109
           P L A  L LC AA+   VSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN
Sbjct: 5   PQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 64

Query: 110 QYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHP 169
           QYNVFEVNQ+ Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHP
Sbjct: 65  QYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 124

Query: 170 LPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           LPPPPSSP+++  SSPSSATPR GSRQW++RAL +SLALIWFGSDWI
Sbjct: 125 LPPPPSSPLASKDSSPSSATPRTGSRQWQIRALFVSLALIWFGSDWI 171

[Close]

BLAST of Sed0003380 vs. ExPASy TrEMBL
Match: A0A6J1J7T1 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482049 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 8.4e-77
Identity = 139/160 (86.88%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 57  LFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEV 116
           L LC AA+   VSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEV
Sbjct: 12  LLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEV 71

Query: 117 NQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLPPPPSS 176
           NQ+ Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHPLPPPPSS
Sbjct: 72  NQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHPLPPPPSS 131

Query: 177 PISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           P+++ +SSPSSATPR GSRQW++RALL+SLALIWFGSDWI
Sbjct: 132 PLASKNSSPSSATPRTGSRQWQIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Sed0003380 vs. ExPASy TrEMBL
Match: A0A1S3CN34 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103502815 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.3e-73
Identity = 138/167 (82.63%), Postives = 144/167 (86.23%), Query Frame = 0


Query: 50  PPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKN 109
           P L    L LCAA +   VSATDHIVGANRGWNPGINYTLWANNHTF+VGDLISFRYQKN
Sbjct: 5   PHLLPFFLLLCAAVSLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFRYQKN 64

Query: 110 QYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHP 169
           QYNVFEVNQT Y NCTTEGA GNWSSGKDFIPLN AQRYYFI GNGQCFNGMKVTILVHP
Sbjct: 65  QYNVFEVNQTGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 124

Query: 170 LPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           LPPPPSSP++T H SPSSATP  GS+QW  RALLISLA+I FGS WI
Sbjct: 125 LPPPPSSPLATEHHSPSSATPCVGSQQWGFRALLISLAMILFGSHWI 171

[Close]

BLAST of Sed0003380 vs. ExPASy TrEMBL
Match: A0A0A0LCI9 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G710810 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.4e-71
Identity = 136/169 (80.47%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 48  TMPPLAAVVLFLCAAAA--SVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQ 107
           T P L    L LCAA +   VSATDHIVGANRGWNPGINYTLWANNHTF+VGDLISFRYQ
Sbjct: 3   TSPRLLPFFLLLCAAVSLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFRYQ 62

Query: 108 KNQYNVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILV 167
           KNQYNVFEVNQT Y NCT EGA GNWSSGKDFIPL+ AQRYYFI GNGQCFNGMKVTILV
Sbjct: 63  KNQYNVFEVNQTGYDNCTIEGASGNWSSGKDFIPLDKAQRYYFICGNGQCFNGMKVTILV 122

Query: 168 HPLPPPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           HPLPPPPSSP++  H+SPSSATP  GSRQW  RALLISLA+I  GS WI
Sbjct: 123 HPLPPPPSSPLAMEHNSPSSATPWVGSRQWGFRALLISLAMILLGSHWI 171

[Close]

BLAST of Sed0003380 vs. ExPASy TrEMBL
Match: A0A6J1DHI7 (lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111020966 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 4.5e-70
Identity = 132/165 (80.00%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 50  PPLAAVVLFLCAAAASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQY 109
           P LA   L L AAAA VSATDHIVGANRGWNPGINYTLWANNHTFFVGD ISFRYQK QY
Sbjct: 7   PHLAFSFLILAAAAAVVSATDHIVGANRGWNPGINYTLWANNHTFFVGDFISFRYQKIQY 66

Query: 110 NVFEVNQTSYGNCTTEGALGNWSSGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLP 169
           NVFEVNQ+ YGNCTTEGA GNWSSGKDFI L  A+RYYFI GNGQC+NGMKVTILVHPLP
Sbjct: 67  NVFEVNQSGYGNCTTEGAFGNWSSGKDFILLKEAKRYYFICGNGQCYNGMKVTILVHPLP 126

Query: 170 PPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIWFGSDWI 215
           PPPSSP++  HSSPSSA  R GS   +++ALL+SLALIWFGS+WI
Sbjct: 127 PPPSSPLAAKHSSPSSAPARLGSWPTRIQALLVSLALIWFGSEWI 171

[Close]

BLAST of Sed0003380 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-28
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 52  LAAVVLFLCAAAASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNV 111
           +A  VL    AA +V+A    VG N+ WNP INYT+WA +  F++ D + F Y++NQYNV
Sbjct: 8   VAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVYERNQYNV 67

Query: 112 FEVNQTSYGNCTTEGALGNWS--SGKDFIPLNIAQRYYFIGGN-GQCFNGMKVTILVHPL 171
            EVN+T+Y +C     + NWS  +G+D + LN+ + YY I GN G C+ GMK+ +LV   
Sbjct: 68  IEVNETNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLVEKP 127

Query: 172 PPPPSSPISTN 180
           PPPP++  + N
Sbjct: 128 PPPPAAAPNKN 138

[Close]

BLAST of Sed0003380 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 122.9 bits (307), Expect = 3.2e-28
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 53  AAVVLFLCAA-AASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNV 112
           A V+ FL AA    V+A  + VG N+ WNP INYT+WA    F++GD + F + +NQ+N+
Sbjct: 10  AVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNI 69

Query: 113 FEVNQTSYGNCTTEGALGNWS--SGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLP 172
            EVN+T Y  C  +  + NW+  +G+D + LN  + YY + G G C+ GMK+++ V  LP
Sbjct: 70  LEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLP 129

Query: 173 PPPSSPISTNHSSPSSATPREGSRQWKVRALLISLALIW 209
           PPP S    N  S S  T   G  Q+ +   L +   +W
Sbjct: 130 PPPKSAPVKNIGSVSMVT---GLAQFMIPVSLFAFPAMW 165

[Close]

BLAST of Sed0003380 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-24
Identity = 54/127 (42.52%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 53  AAVVLFLCAA-AASVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNV 112
           A V+ FL AA    V+A  ++VG  + WNP INYTLWA    F+VGD + F + ++Q+N+
Sbjct: 10  AVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNI 69

Query: 113 FEVNQTSYGNCTTEGALGNWS--SGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVH-PL 172
            EVN+  Y  C +   + N++  +G+D +PL   +RYY + G G C  GMK+ +LV  P 
Sbjct: 70  LEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVETPP 129

Query: 173 PPPPSSP 176
           PPPP +P
Sbjct: 130 PPPPFTP 136

[Close]

BLAST of Sed0003380 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 85.9 bits (211), Expect = 4.3e-17
Identity = 45/134 (33.58%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 52  LAAVVLFLCAAAASVSATDHIVGANR-GWNPGINYTLWANNHTFFVGDLISFRYQKNQYN 111
           L  V + +      V ++ H VG  R  WN  +N++ WAN+  F+ GD + F + + ++N
Sbjct: 9   LVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHN 68

Query: 112 VFEVNQTSYGNCTTEGALGNWS-SGKDFIPLNIAQRYYFIGGNGQCFNGMKVTILVHPLP 171
           + +VN++SY  C     + N +  G+D   L   + YYFI G G C  GMK+ I V P P
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLPQP 128

Query: 172 PPPSSPISTNHSSP 184
           PP +    T+ ++P
Sbjct: 129 PPSAPTNFTSTTTP 142

[Close]

BLAST of Sed0003380 vs. TAIR 10
Match: AT3G17675.1 (Cupredoxin superfamily protein )

HSP 1 Score: 81.6 bits (200), Expect = 8.2e-16
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 0


Query: 69  TDHIVGANRGWNPGINYTLWANNHTFFVGDLISFRYQKNQYNVFEVNQTSYGNCTTEGAL 128
           T+HIVG + GW    NYT W     F VGD++ F Y+ +Q+NV +VN T+Y +C  +   
Sbjct: 7   TEHIVGDSNGWELFTNYTNWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGLDNYT 66

Query: 129 GNWSSGKDFIPLNIAQRYYFI-GGNGQCFNGMKVTILVHP 168
             ++ G D I L+   + +FI G +  C NG K++I V P
Sbjct: 67  TLFTKGNDSIILSEVGKLWFICGVDDHCVNGQKLSINVAP 106

The following BLAST results are available for this feature:

BLAST of Sed0003380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018121.1	1.2e-77	85.63	Lamin-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023526524.1	4.6e-77	85.03	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_038903873.1	7.8e-77	83.53	lamin-like protein [Benincasa hispida]	[more]
XP_022934432.1	1.0e-76	84.43	lamin-like protein [Cucurbita moschata]	[more]
XP_022983448.1	1.7e-76	86.88	lamin-like protein [Cucurbita maxima]	[more]

BLAST of Sed0003380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	4.5e-27	38.99	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
A0A072U307	2.6e-14	31.79	Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1	[more]
G7L0H3	5.7e-14	33.33	Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1	[more]
Q41001	8.3e-13	36.88	Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
A0A0M4FTF3	1.2e-11	33.33	Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1	[more]

BLAST of Sed0003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2R0	4.9e-77	84.43	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441613 PE=4 SV=1	[more]
A0A6J1J7T1	8.4e-77	86.88	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482049 PE=4 SV=1	[more]
A0A1S3CN34	4.3e-73	82.63	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103502815 PE=4 SV=1	[more]
A0A0A0LCI9	2.4e-71	80.47	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G710810...	[more]
A0A6J1DHI7	4.5e-70	80.00	lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111020966 PE=4 SV=1	[more]

BLAST of Sed0003380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01070.1	2.5e-28	44.27	early nodulin-like protein 16	[more]
AT5G15350.1	3.2e-28	38.99	early nodulin-like protein 17	[more]
AT4G12880.1	4.8e-24	42.52	early nodulin-like protein 19	[more]
AT2G27035.1	4.3e-17	33.58	early nodulin-like protein 20	[more]
AT3G17675.1	8.2e-16	39.00	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 67..168 e-value: 9.3E-28 score: 98.5
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 68..166
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 79..159 e-value: 4.4E-19 score: 68.3
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 69..167 score: 33.145203
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 54..188
None	No IPR available	PANTHER	PTHR33021:SF13	OS09G0557900 PROTEIN	coord: 54..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003380.1	Sed0003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0009055	electron transfer activity