Sed0003372 (gene) Chayote v1

Overview


Name	Sed0003372
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 4807628 .. 4809920 (+)
RNA-Seq Expression	Sed0003372
Synteny	Sed0003372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCCGACCCGCAAATCGAACCGGGTCCTTGCAGAGCAAGAAAGCCTTCAAAACCCCGCACCAATAAAAAAAACAGATCGACGAAGAACACAGAGTGTGGAAGTGATAAACCCTAATTAGCAATAGGAGAGATCAAGGGTACAATTCTTTCAAACTGGGTGGATCTGATTCATTTTGTGCCCTAAAATCCCCAATTCCGATTCGTTTTCCAGTTGCCGATGGGGTTTTTCAGAAGTAGCTTCTCCTTAATTGCGGGAACTGTGTGTGGGATTTATATCGCTCAAAATTACAACGTTCCCAACATCAAGAAGCTCGCGAATTCTGGGATTTTGATGGCCAAACACATCGAAGAGAATTACAGGAAACCGAAGAAGAGGGGAGATGACGATTGATTCCAAGATTTACGACCCCCCAGGTTCCCCTTTTCACATATTCTTCAACAACTGCTTGTTTCTTCTTCATTTTTAGGCGTTGAGTATTTACTGTGTGTTCAATTTTTGTGGTTTTATGTTTAGGGAACTGAATTTTATTTTAGTGATTAATGAGTTTTGATCAAGTTATTGGAGTATGGAATTTGTGCTTCCAAGTAGTTGTTGGTTTTTGGTGGTACTGTGGTGATTAAATTGGGAATACGTAATGCAATGCTCTAGGTATGCGTTTGATTCTTTGTAAATATTTATCAATGTTGAGATATGACTTGAACTGTTTGATGTCCCACAATTAGTTGGTCGGGATCACAGGGCCCCTAGATGATATATGATCATTTTTGTAATTTCGGCTTATTTGTAATAGAGTTTTATGAGAGTGCAAACCCTATAGCTCTTTATTGACATTCTGTCTTCGGTAGTTAACCGGCTGTTAATGAACCACGTAATTTTGTGTGTTCTTCTTTCATTTTTGTACTGTTTTTGTGTGATTGTTGCTGCCGTTTTTGTAACGGTTTGAATTTGAAAACTAGGGATGCTAATTCTGTATTGCTTAAGGGAAATTGGACTGGTAACGGTATCTGTGCCTTTTTCATAGTTCCAATGAAATATCTCTGGAATTGGCATCATTAAGTGTTGACTTGTATCCTCGTTTTCATTCATTGACTTAATCAGGATTTTGTTTAAAATGGCTTACTTAATCATGGTGTTGTAGTTTTTATCTTGTGAAAATTTAAAGATGTTGTTTCAAATCCTGTGCAAAGGAATCGAGTATCTAGAGAAGTTGTGGATTTTGTTTTGACATTTGCACATGGTATGTTTGACTTATTGAGCTTGTCAACTAGAGTATTTCCATCTTAGTTGGATTTTACTCTATGTGGTTCTTTGTATTGTACAAAAATCATTAGGAAATCAAGGCATCATTCAAGCCAATGACAACAACAAAAACGCTCCTCAATCAAACATCAAAGACTTCGAATAGTTACAGAAAACTTTTGCTGGAGGGAATTCTAATTGAAGGCAACAATAATGAACTTTGGCAATCCAAAAGTCTTCAGTTTCTTTCAATCCAAAATAAAGAGCACTTCGAGCATTTCTCATTGGGTTGAAGCTTTGGCAACAAGCTATCACCAGCCTCAATCTCGATAAGAAAATCTTAGTATTATATATAGAGATAGGCACACACCATTTCAAGCTTAAGGAATCAAGAGGGACATAAAGAGAACTTAGGTGGTGGTTGGAGCAAAAAAAAAAACAAAAGACAGAGCTTAAGATAGTTTTTTTTTTTCTTTACTGATCAACTTTTAGAACTCTTACGGTTGTTTGGTTTATAGGTTCTGTCCAGGCTAGGATTTATGATTAGGTGTATTCAAGGTTTCACTTCTTTCTAATTGCTACTGTGAAGGAATATTTCTAAAATGTGATAGGCGGCGTTGATATTTTTAAATGGAGAACTAAGGCATTGGTGGACTCTTAATGGATAACATTAACAATTGCTAAAAAACACTCTCTATTCATTAGTCCATGACATCCAAGAAAGTAGTTTCCCACCTCATGTCGCGTGACGTTTTCTTAGAGAAGTCTCTAGAAGGTCTGAACTCTGATTTATATTGAGCAATGACATGAGAACACTCTATGCTCATATTGTTTAATTCAACTAAATATAAAGGGTGTTTCAGATTTCTATTTTGTGATAATGAAGGCTTGAGTTATATTAAGATTAGAGGTGATCAATCTAAGTTGAACTCAGATAGGGACTGTAATACTTTGATTTAGTTTGCAGGTCGTAGCCCCCCTGTATTAATGCATCAAGGAAGATCATTTGCACGAAACTTTCCTTAACGGAACTAGAAGCTAGAGGTTTTCTC

mRNA sequence

GGCCCGACCCGCAAATCGAACCGGGTCCTTGCAGAGCAAGAAAGCCTTCAAAACCCCGCACCAATAAAAAAAACAGATCGACGAAGAACACAGAGTGTGGAAGTGATAAACCCTAATTAGCAATAGGAGAGATCAAGGGTACAATTCTTTCAAACTGGGTGGATCTGATTCATTTTGTGCCCTAAAATCCCCAATTCCGATTCGTTTTCCAGTTGCCGATGGGGTTTTTCAGAAGTAGCTTCTCCTTAATTGCGGGAACTGTGTGTGGGATTTATATCGCTCAAAATTACAACGTTCCCAACATCAAGAAGCTCGCGAATTCTGGGATTTTGATGGCCAAACACATCGAAGAGAATTACAGGAAACCGAAGAAGAGGGGAGATGACGATTGATTCCAAGATTTACGACCCCCCAGGTCGTAGCCCCCCTGTATTAATGCATCAAGGAAGATCATTTGCACGAAACTTTCCTTAACGGAACTAGAAGCTAGAGGTTTTCTC

Coding sequence (CDS)

ATGGGGTTTTTCAGAAGTAGCTTCTCCTTAATTGCGGGAACTGTGTGTGGGATTTATATCGCTCAAAATTACAACGTTCCCAACATCAAGAAGCTCGCGAATTCTGGGATTTTGATGGCCAAACACATCGAAGAGAATTACAGGAAACCGAAGAAGAGGGGAGATGACGATTGA

Protein sequence

MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD

Homology

[Close]

BLAST of Sed0003372 vs. NCBI nr
Match: KAF8412996.1 (hypothetical protein HHK36_000968 [Tetracentron sinense])

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1    MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
            MG  RSSFS + GTVCG+YIAQNYNVPNIKKLAN+G+LMAKHIEENYRKPKKRGDDD
Sbjct: 986  MGIIRSSFSFLMGTVCGVYIAQNYNVPNIKKLANTGLLMAKHIEENYRKPKKRGDDD 1042

[Close]

BLAST of Sed0003372 vs. NCBI nr
Match: XP_038882745.1 (uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882747.1 uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882749.1 uncharacterized protein LOC120073906 [Benincasa hispida])

HSP 1 Score: 103.2 bits (256), Expect = 7.5e-19
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MGF RSSFS IAGTV GIY+AQNYNVPNI+KLAN+G++MAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGTVIGIYVAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Sed0003372 vs. NCBI nr
Match: XP_022132505.1 (uncharacterized protein LOC111005345 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MGF RSSFS IAGTV GIY+AQNYNVPNI+KLAN+G+++AKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Sed0003372 vs. NCBI nr
Match: KAF8379244.1 (hypothetical protein HHK36_028676 [Tetracentron sinense])

HSP 1 Score: 102.1 bits (253), Expect = 1.7e-18
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MG  RSSFS + GT+CG+YIAQNYNVPNIKKLAN+G+LMAKHIEE YRKPKKRG+DD
Sbjct: 36 MGIIRSSFSFMMGTLCGVYIAQNYNVPNIKKLANTGLLMAKHIEETYRKPKKRGEDD 92

[Close]

BLAST of Sed0003372 vs. NCBI nr
Match: KAG7034311.1 (hypothetical protein SDJN02_04038, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-18
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1   MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
           MG  RS FSLIAGTV GIYIAQNYNVPNI+KLAN+G++MAKHIEENYRKPKKR DDD
Sbjct: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 124

[Close]

BLAST of Sed0003372 vs. ExPASy TrEMBL
Match: A0A6J1BSM8 (uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005345 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 8.1e-19
Identity = 47/57 (82.46%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MGF RSSFS IAGTV GIY+AQNYNVPNI+KLAN+G+++AKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]

BLAST of Sed0003372 vs. ExPASy TrEMBL
Match: A0A6J1IPG1 (uncharacterized protein LOC111478763 OS=Cucurbita maxima OX=3661 GN=LOC111478763 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MG  RS FSLIAGTV GIYIAQNYNVPNI+KLAN+G++MAKHIEENYRKPKKR DDD
Sbjct: 1  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Sed0003372 vs. ExPASy TrEMBL
Match: A0A6J1KVJ8 (uncharacterized protein LOC111496825 OS=Cucurbita maxima OX=3661 GN=LOC111496825 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MGF RSSFS I GTV GIY+AQNY+VPNI+KLAN+GILMAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Sed0003372 vs. ExPASy TrEMBL
Match: A0A6J1GCJ7 (uncharacterized protein LOC111452953 OS=Cucurbita moschata OX=3662 GN=LOC111452953 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MG  RS FSLIAGTV GIYIAQNYNVPNI+KLAN+G++MAKHIEENYRKPKKR DDD
Sbjct: 1  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Sed0003372 vs. ExPASy TrEMBL
Match: A0A6J1HHR2 (uncharacterized protein LOC111463630 OS=Cucurbita moschata OX=3662 GN=LOC111463630 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGDDD 58
          MGF RSSFS I GTV GIY+AQNY+VPNI+KLAN+GILMAKHIEENYRKPKKR DDD
Sbjct: 1  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]

BLAST of Sed0003372 vs. TAIR 10
Match: AT2G35736.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-18
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKK 53
          MG FRS FS I G+V G+Y+AQNYNVPNI+KL N+G+++AKH+EENYRKPKK
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of Sed0003372 vs. TAIR 10
Match: AT2G35736.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25225.1). )

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-18
Identity = 37/52 (71.15%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKK 53
          MG FRS FS I G+V G+Y+AQNYNVPNI+KL N+G+++AKH+EENYRKPKK
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]

BLAST of Sed0003372 vs. TAIR 10
Match: AT4G25225.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.2 bits (204), Expect = 7.5e-17
Identity = 39/55 (70.91%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MGFFRSSFSLIAGTVCGIYIAQNYNVPNIKKLANSGILMAKHIEENYRKPKKRGD 56
          MG  RSSFS I GTVCGIYIAQ YNVPNIKKL +  + MAK +EE YRKPK R D
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

The following BLAST results are available for this feature:

BLAST of Sed0003372 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8412996.1	4.0e-20	85.96	hypothetical protein HHK36_000968 [Tetracentron sinense]	[more]
XP_038882745.1	7.5e-19	84.21	uncharacterized protein LOC120073906 [Benincasa hispida] >XP_038882746.1 unchara...	[more]
XP_022132505.1	1.7e-18	82.46	uncharacterized protein LOC111005345 [Momordica charantia]	[more]
KAF8379244.1	1.7e-18	80.70	hypothetical protein HHK36_028676 [Tetracentron sinense]	[more]
KAG7034311.1	2.9e-18	84.21	hypothetical protein SDJN02_04038, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Sed0003372 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0003372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSM8	8.1e-19	82.46	uncharacterized protein LOC111005345 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1IPG1	1.4e-18	84.21	uncharacterized protein LOC111478763 OS=Cucurbita maxima OX=3661 GN=LOC111478763...	[more]
A0A6J1KVJ8	1.4e-18	84.21	uncharacterized protein LOC111496825 OS=Cucurbita maxima OX=3661 GN=LOC111496825...	[more]
A0A6J1GCJ7	1.4e-18	84.21	uncharacterized protein LOC111452953 OS=Cucurbita moschata OX=3662 GN=LOC1114529...	[more]
A0A6J1HHR2	1.4e-18	84.21	uncharacterized protein LOC111463630 OS=Cucurbita moschata OX=3662 GN=LOC1114636...	[more]

BLAST of Sed0003372 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35736.1	8.8e-18	71.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35736.2	8.8e-18	71.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G25225.1	7.5e-17	70.91	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027854	Short transmembrane mitochondrial protein 1	PFAM	PF15054	DUF4535	coord: 6..50 e-value: 8.1E-24 score: 83.1
None	No IPR available	PANTHER	PTHR33528:SF14	OS07G0239500 PROTEIN	coord: 1..57
None	No IPR available	PANTHER	PTHR33528	OS07G0239500 PROTEIN	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0003372.1	Sed0003372.1	mRNA